Gene: SCGN (secretagogin, EF-hand calcium binding protein) Sus scrofa
Analyze
Symbol:
SCGN
Name:
secretagogin, EF-hand calcium binding protein
RGD ID:
13855766
Description:
ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); FOUND IN cytoplasm (inferred); cytoplasmic vesicle (inferred); extracellular region (inferred); INTERACTS WITH deoxynivalenol
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
secretagogin
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SCGN (secretagogin, EF-hand calcium binding protein)
HGNC
EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):
Scgn (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Scgn (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Scgn (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SCGN (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
SCGN (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Scgn (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SCGN (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Scgn (secretagogin, EF-hand calcium binding protein)
Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 20,389,493 - 20,432,978 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 20,389,156 - 20,432,985 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 21,689,440 - 21,732,931 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
Comparative Map Data
SCGN (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 7 20,389,493 - 20,432,978 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 7 20,389,156 - 20,432,985 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 7 21,689,440 - 21,732,931 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SCGN (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 6 25,652,215 - 25,701,783 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 6 25,652,201 - 25,701,783 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 6 25,652,443 - 25,702,011 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 6 25,760,408 - 25,809,990 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 6 25,760,407 - 25,809,985 NCBI Celera 6 26,879,633 - 26,929,216 (+) NCBI Celera Cytogenetic Map 6 p22.2 NCBI HuRef 6 25,595,416 - 25,644,987 (+) NCBI HuRef CHM1_1 6 25,654,627 - 25,704,213 (+) NCBI CHM1_1 T2T-CHM13v2.0 6 25,518,025 - 25,567,550 (+) NCBI T2T-CHM13v2.0
Scgn (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 24,137,439 - 24,175,310 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 13 24,137,439 - 24,175,197 (-) Ensembl GRCm39 Ensembl GRCm38 13 23,953,456 - 23,991,327 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 13 23,953,456 - 23,991,214 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 13 24,045,325 - 24,083,083 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 13 23,960,921 - 23,998,679 (-) NCBI MGSCv36 mm8 Celera 13 24,185,142 - 24,222,913 (-) NCBI Celera Cytogenetic Map 13 A3.1 NCBI cM Map 13 10.01 NCBI
Scgn (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 41,534,558 - 41,576,525 (+) NCBI GRCr8 mRatBN7.2 17 41,106,681 - 41,148,656 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 41,106,467 - 41,148,667 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 41,174,261 - 41,215,631 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 42,778,305 - 42,819,675 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 41,062,609 - 41,103,976 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 43,357,888 - 43,399,321 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 43,357,888 - 43,399,321 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 45,214,579 - 45,256,809 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 48,225,075 - 48,266,508 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 17 48,227,915 - 48,269,349 (+) NCBI Celera 17 40,739,598 - 40,779,916 (+) NCBI Celera Cytogenetic Map 17 p11 NCBI
Scgn (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955483 1,392,770 - 1,429,594 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955483 1,392,772 - 1,429,563 (-) NCBI ChiLan1.0 ChiLan1.0
SCGN (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 5 40,299,097 - 40,367,239 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 6 36,300,454 - 36,350,030 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 6 25,486,599 - 25,571,272 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 6 25,812,650 - 25,862,236 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 6 25,812,443 - 25,862,227 (+) Ensembl panpan1.1 panPan2
SCGN (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 35 23,602,244 - 23,638,108 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 35 23,602,343 - 23,638,055 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 35 23,531,684 - 23,540,559 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 35 23,717,908 - 23,753,767 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 35 23,717,868 - 23,753,765 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 35 23,527,247 - 23,563,304 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 35 23,577,972 - 23,614,023 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 35 25,015,623 - 25,051,501 (+) NCBI UU_Cfam_GSD_1.0
Scgn (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024404946 1,929,640 - 1,965,364 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936671 1,655,978 - 1,693,175 (+) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936671 1,656,179 - 1,696,580 (+) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SCGN (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 17 46,554,759 - 46,605,282 (-) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 17 46,565,302 - 46,604,710 (-) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666044 25,585,367 - 25,635,700 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Scgn (Heterocephalus glaber - naked mole-rat)
.
Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
8
13
3
1
7
1
13
3
5
1
Too many to show, limit is 500. Download them if you would like to view them all.
Sequence
Ensembl Acc Id:
ENSSSCT00000001197 ⟹ ENSSSCP00000001171
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 7 20,389,493 - 20,432,978 (+) Ensembl
Ensembl Acc Id:
ENSSSCT00000087451 ⟹ ENSSSCP00000061584
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 7 20,389,493 - 20,432,978 (+) Ensembl
RefSeq Acc Id:
NM_001077224 ⟹ NP_001070692
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 7 20,389,726 - 20,432,535 (+) NCBI
Sequence:
ATGGACAGCGCCTGCAAACCAACTCAAAGGCGCTTGGATGCCGCTGGCTTCTGGCAGATCTGGCAGCGCTTTGACGCGGATGAAAAAGGTTACATAGAAGAGAAGGAGCTTGATGCTTTCTTTCATCA CGTGTTGACGAAATTGGGTACTGATGATGCAGTCATGGAAGAAAATGTGTGGAAGATGAAGCAACAATTTATGGCTGCCCATGACGTCTCTAAAGATGGTCACATACAGATGAAAGAGCTTGCCTGCC TATTCTTGTCTGAGGATGAAAACTTCCTTCTGCTCTTTCGCCAGGAAACCCCTTTGGACAGCAGTGTGGAGTTTATGCAGATCTGGCGCAAATATGATGCTGACAGCAGTGGCTTTATATCAGCTGCT GAACTTTGTAACTTCCTCCGAGACCTTTTCCTCCACCACAAAAAGGCCATTTCGGAGGCTAAGCTGGAAGAATATACTGGCACCATGATGAAGATCTTTGACAAAAATAAAGATGGCCGGTTGGATCT TAATGATTTGGCAAGAATTCTGGCTCTTCAGGAAAATTTCCTTCTCCAATTTAAAATGGATGCTTGTTCCACTGAAGAAAGAAAGAGGGACTTTGAGAAAATCTTTGCTCACTATGATGTTAGTAAAA CTGGAGCTCTAGAAGGCCCAGAAGTGGATGGGTTTGTCAAAGACATGATGGAGCTTGTCCAGCCCAGCATCAGTGGGGTGGACCTTGATAAGTTCCGGGAGATTCTCTTGCGTCACTGCGATGTGAAC AAGGATGGAAAAATTCAGAAGTCTGAGCTGGCTTTGTGCCTTGGCCTGAAAATCAACCCATAA
hide sequence
RefSeq Acc Id:
XM_005665639 ⟹ XP_005665696
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 7 20,389,156 - 20,432,985 (+) NCBI
Sequence:
TCTCTTACCACCGCTATCACCCTCTCCAACTCATCTACATACATCTTTAAATCAACAGGTTCCA AGGAGCCTAACACTTTAAATGAAGTAGCTCTCTCTAGAAAACCCCTTGAGACACAAGTTTGGAAGGTGCGGGCAACTTAAGAGGGATGCTTTCTTTGACAAACAAGAGAGTGAGCCATGGACACTCCC AAGACAGCTCTTTCCTCCCAGACTTCCCCACAGCGCTGAGGCAGACAAGCGCTTCCCCTTGATTCTGCCCAGGACAGTCAGCGTGTGGGGCGGGGCAGGGACGACGCGCCAGGAACAGGGCGGGTTCC AAGCCGCTGGTTTCCCTGAGATGCCACGGTGGGGGCTTGGGGACTGCAAGGCGACGCTATAGCGCCAGCGGCCGCCGCCACCGCGTGCCCGCCCCTCAGACAGGTGCTCAAAGCAAATCAGAGAGCGA AAGAAACAGGCGAGGGAATTAGAAGGAGTCCTCAAATCAGAGAGCGAAAGAAACAGGCGAGGGAGTTAGAAGTTCTCAAGGTGTTTCTTGCCGGCCGGTACCTGCGCTTCGTTGTCAATACCATGGAC AGCGCCTGCAAACCAACTCAAAGGCGCTTGGATGCCGCTGGCTTCTGGCAGATCTGGCAGCGCTTTGACGCGGATGAAAAAGGTTACATAGAAGAGAAGGAGCTTGATGCTTTCTTTCATCACGTGTT GACGAAATTGGGTACTGATGATGCAGTCATGGAAGAAAATGTGTGGAAGATGAAGCAACAATTTATGGCTGCCCATGACGTCTCTAAAGATGGTCACATACAGATGAAAGAGGAAACCCCTTTGGACA GCAGTGTGGAGTTTATGCAGATCTGGCGCAAATATGATGCTGACAGCAGTGGCTTTATATCAGCTGCTGAACTTTGTAACTTCCTCCGAGACCTTTTCCTCCACCACAAAAAGGCCATTTCGGAGGCT AAGCTGGAAGAATATACTGGCACCATGATGAAGATCTTTGACAAAAATAAAGATGGCCGGTTGGATCTTAATGATTTGGCAAGAATTCTGGCTCTTCAGGAAAATTTCCTTCTCCAATTTAAAATGGA TGCTTGTTCCACTGAAGAAAGAAAGAGGGACTTTGAGAAAATCTTTGCTCACTATGATGTTAGTAAAACTGGAGCTCTAGAAGGCCCAGAAGTGGATGGGTTTGTCAAAGACATGATGGAGCTTGTCC AGCCCAGCATCAGTGGGGTGGACCTTGATAAGTTCCGGGAGATTCTCTTGCGTCACTGCGATGTGAACAAGGATGGAAAAATTCAGAAGTCTGAGCTGGCTTTGTGCCTTGGCCTGAAAATCAACCCA TAATGAAAATCAACCCATAACCCCCAGAATTCTTTGCCTTTTGCTCTTAGTTGTTTCTGAGCCCCTCCTGGTAAAAGTTTTTCTGTGCTTTGCTCTTGGGGACACAGTGGGTCAACTTTTTAACAAAT GATGTGGTTTTCTTGGGCAAGAGGAGGGACCCGAGGGCCTTTTTTTCATGGCATGGTGTTTTCCTGCTTTTAATGGAAGCCTCCCACGCAAGGTCTGTGTTATTTGCCCCTTGACCCTGGACTTTCCT GTCCCCTCCAAAGACTCATCCGACCCCGAAGATCTCGGCTTGTCCTCCCCCAGTCACTGGGAAGGCGGGGGCAGCCAAATCCATCCATCTGTGCTTCTCTTGTGGGCTTTCTGCTGAATGCCATGTGA CACTGTGGTAGTCCCATGACTTCTACAAATAGATTGTGAAGTGGAAATAAACCTGCCGCTGGAAACAAA
hide sequence
RefSeq Acc Id:
XP_005665696 ⟸ XM_005665639
- Peptide Label:
isoform X1
- UniProtKB:
A0A8D1CB08 (UniProtKB/TrEMBL)
- Sequence:
MDSACKPTQRRLDAAGFWQIWQRFDADEKGYIEEKELDAFFHHVLTKLGTDDAVMEENVWKMKQQFMAAHDVSKDGHIQMKEETPLDSSVEFMQIWRKYDADSSGFISAAELCNFLRDLFLHHKKAIS EAKLEEYTGTMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDACSTEERKRDFEKIFAHYDVSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCLGLKI NP
hide sequence
RefSeq Acc Id:
NP_001070692 ⟸ NM_001077224
- UniProtKB:
Q06A97 (UniProtKB/Swiss-Prot), A0A8D1CB08 (UniProtKB/TrEMBL)
- Sequence:
MDSACKPTQRRLDAAGFWQIWQRFDADEKGYIEEKELDAFFHHVLTKLGTDDAVMEENVWKMKQ QFMAAHDVSKDGHIQMKELACLFLSEDENFLLLFRQETPLDSSVEFMQIWRKYDADSSGFISAAELCNFLRDLFLHHKKAISEAKLEEYTGTMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDA CSTEERKRDFEKIFAHYDVSKTGALEGPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCLGLKINP
hide sequence
Ensembl Acc Id:
ENSSSCP00000001171 ⟸ ENSSSCT00000001197
Ensembl Acc Id:
ENSSSCP00000061584 ⟸ ENSSSCT00000087451
Additional Information