CTSD (cathepsin D) - Rat Genome Database

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Gene: CTSD (cathepsin D) Homo sapiens
Analyze
Symbol: CTSD
Name: cathepsin D
RGD ID: 1351014
HGNC Page HGNC:2529
Description: Enables peptidase activity. Involved in several processes, including execution phase of apoptosis; lipoprotein catabolic process; and positive regulation of apoptotic process. Located in endosome membrane; lysosomal membrane; and membrane raft. Is active in cytosol. Implicated in Alzheimer's disease; breast cancer; and neuronal ceroid lipofuscinosis 10. Biomarker of Alzheimer's disease.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cathepsin d (lysosomal aspartyl protease); ceroid-lipofuscinosis, neuronal 10; CLN10; CPSD; epididymis secretory sperm binding protein Li 130P; HEL-S-130P; lysosomal aspartyl peptidase; lysosomal aspartyl protease; MGC2311
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,752,755 - 1,763,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,752,752 - 1,764,573 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,773,985 - 1,785,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,730,561 - 1,741,798 (-)NCBINCBI36Build 36hg18NCBI36
Build 34111,730,560 - 1,741,798NCBI
Celera111,812,103 - 1,823,339 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,564,872 - 1,576,226 (-)NCBIHuRef
CHM1_1111,772,933 - 1,784,154 (-)NCBICHM1_1
T2T-CHM13v2.0111,838,305 - 1,849,587 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
CTSDHumanAlzheimer's disease  IAGP 1358532 RGD 
CTSDHumanAlzheimer's disease  IEP 1358533protein:decreased expression:lymphocyte:RGD 
CTSDHumanatherosclerosis  ISOCtsd (Mus musculus)5687152 RGD 
CTSDHumanbreast cancer  IMP 1547890human gene in a mouse modelRGD 
CTSDHumanCOVID-19  HEP 28912744mRNA:increased expression:peripheral blood mononuclear cell (human)RGD 
CTSDHumanNeoplasm Metastasis  IEP 1547892protein:increased expression:oral cavity more ...RGD 
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CTSDHumanBeckwith-Wiedemann syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Beckwith-Wiedemann syndromeClinVarPMID:21910219 more ...
CTSDHumandelta beta-thalassemia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Thalassemia and gamma-delta-betaClinVarPMID:2798417
CTSDHumandevelopmental and epileptic encephalopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:28492532
CTSDHumanearly infantile epileptic encephalopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:28492532
CTSDHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
CTSDHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:26467025 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
CTSDHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:26467025 and PMID:28492532
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:18762956 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16670177 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10218883 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17576681 more ...
CTSDHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:24767253 and PMID:28492532
CTSDHumanimmunodeficiency 39  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency 39ClinVarPMID:28492532
CTSDHumanneuronal ceroid lipofuscinosis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:26467025 and PMID:28492532
CTSDHumanneuronal ceroid lipofuscinosis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:25741868 and PMID:28492532
CTSDHumanneuronal ceroid lipofuscinosis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:26467025 more ...
CTSDHumanneuronal ceroid lipofuscinosis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Neuronal ceroid lipofuscinosisClinVarPMID:25741868 more ...
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CTSDHumanamyotrophic lateral sclerosis type 1  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:11796754
CTSDHumanDiabetic Nephropathies  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:28468961
CTSDHumanhepatocellular carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21472284
CTSDHumankidney disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15213268
CTSDHumanNeoplasm Invasiveness  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15048980
CTSDHumanneuronal ceroid lipofuscinosis 10  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
CTSDHumanosteoarthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18784066
CTSDHumanProstatic Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:17013881
CTSDHumanrenal cell carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:15108329
CTSDHumanrheumatoid arthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12833524
CTSDHumanWeight Gain  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19030233
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CTSDHumanneuronal ceroid lipofuscinosis 10  ISSCtsd (Mus musculus)13592920OMIM:610127MouseDO 
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Original Reference(s)
CTSDHumanneuronal ceroid lipofuscinosis 10  IAGP 7240710 OMIM 

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CTSDHuman(+)-pilocarpine increases expressionISOCtsd (Rattus norvegicus)6480464Pilocarpine results in increased expression of CTSD mRNACTDPMID:17971868
CTSDHuman(-)-epigallocatechin 3-gallate multiple interactionsISOCtsd (Rattus norvegicus)6480464epigallocatechin gallate inhibits the reaction [Isoproterenol affects the activity of CTSD protein]CTDPMID:18294627
CTSDHuman(-)-epigallocatechin 3-gallate increases expressionEXP 6480464epigallocatechin gallate results in increased expression of CTSD mRNA and epigallocatechin gallate results in increased expression of CTSD proteinCTDPMID:31195006 and PMID:39313106
CTSDHuman(1->4)-beta-D-glucan multiple interactionsISOCtsd (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CTSD mRNACTDPMID:36331819
CTSDHuman(R)-linalyl acetate increases expressionEXP 6480464linalyl acetate results in increased expression of CTSD mRNACTDPMID:31393563
CTSDHuman(R)-linalyl acetate multiple interactionsEXP 6480464Fulvestrant inhibits the reaction [linalyl acetate results in increased expression of CTSD mRNA]CTDPMID:31393563
CTSDHuman(R)-lipoic acid multiple interactionsISOCtsd (Rattus norvegicus)6480464Thioctic Acid inhibits the reaction [Doxorubicin results in decreased activity of CTSD protein]CTDPMID:12841641
CTSDHuman(R,R,R)-alpha-tocopherol increases expressionISOCtsd (Rattus norvegicus)6480464alpha-Tocopherol results in increased expression of CTSD proteinCTDPMID:18942769
CTSDHuman(S)-amphetamine decreases expressionISOCtsd (Mus musculus)6480464Dextroamphetamine results in decreased expression of CTSD mRNACTDPMID:12558987
CTSDHuman(S)-naringenin multiple interactionsEXP 6480464[naringenin results in increased phosphorylation of and results in increased activity of ESR1 protein] which results in increased expression of CTSD mRNACTDPMID:24586459
CTSDHuman1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionEXP 6480464o and p'-DDT results in increased expression of CTSD mRNACTDPMID:22609851
CTSDHuman1,2,4-trimethylbenzene decreases expressionISOCtsd (Rattus norvegicus)6480464pseudocumene results in decreased expression of CTSD proteinCTDPMID:17337753
CTSDHuman1,2-dimethylhydrazine multiple interactionsISOCtsd (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of CTSD mRNA]CTDPMID:22206623
CTSDHuman1,2-dimethylhydrazine increases expressionISOCtsd (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of CTSD mRNACTDPMID:22206623
CTSDHuman1,3-dichloropropan-2-ol decreases expressionEXP 64804641 and 3-dichloro-2-propanol results in decreased expression of CTSD proteinCTDPMID:33581215
CTSDHuman1,8-cineole multiple interactionsEXP 6480464Fulvestrant inhibits the reaction [Eucalyptol results in increased expression of CTSD mRNA]CTDPMID:31393563
CTSDHuman1,8-cineole increases expressionEXP 6480464Eucalyptol results in increased expression of CTSD mRNACTDPMID:31393563
CTSDHuman17beta-estradiol multiple interactionsEXP 64804643' more ...CTDPMID:10376965 more ...
CTSDHuman17beta-estradiol increases expressionISOCtsd (Mus musculus)6480464Estradiol results in increased expression of CTSD mRNACTDPMID:39298647
CTSDHuman17beta-estradiol increases secretionEXP 6480464Estradiol results in increased secretion of CTSD protein and Estradiol results in increased secretion of CTSD protein modified formCTDPMID:2278856 more ...

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Biological Process
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Original Reference(s)
CTSDHumanantigen processing and presentation of exogenous peptide antigen via MHC class II involved_inTAS 150520179 ReactomeReactome:R-HSA-2132295
CTSDHumanautophagosome assembly acts_upstream_of_or_withinIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanepithelial tube branching involved in lung morphogenesis NOT|involved_inISOCtsd (Mus musculus)9068941 PMID:17500053UniProtPMID:17500053
CTSDHumanexecution phase of apoptosis involved_inIDA 150520179 PMID:12107093ARUK-UCLPMID:12107093
CTSDHumaninsulin catabolic process involved_inIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumaninsulin receptor recycling involved_inIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanlipoprotein catabolic process involved_inIDA 150520179 PMID:16997486ARUK-UCLPMID:16997486
CTSDHumanpositive regulation of apoptotic process involved_inIDA 150520179 PMID:12107093ARUK-UCLPMID:12107093
CTSDHumanprotein catabolic process  ISOCtsd (Rattus norvegicus)9068941 RGDPMID:12666874 and REF_RGD_ID:1299317
CTSDHumanproteolysis involved_inIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
CTSDHumanproteolysis involved_inIBAMGI:109365 more ...150520179 GO_CentralGO_REF:0000033
CTSDHumanproteolysis involved_inIDA 150520179 PMID:16997486ARUK-UCLPMID:16997486
CTSDHumanproteolysis involved_inIMP 150520179 PMID:17188016ARUK-UCLPMID:17188016
CTSDHumanproteolysis involved_inIEAInterPro:IPR001461 more ...150520179 InterProGO_REF:0000002
CTSDHumanregulation of establishment of protein localization involved_inIDA 150520179 PMID:12107093ARUK-UCLPMID:12107093
CTSDHumanresponse to nutrient levels  ISOCtsd (Rattus norvegicus)9068941 RGDPMID:17665967 and REF_RGD_ID:1643198
CTSDHumansynaptic vesicle endosomal processing involved_inISOCtsd (Rattus norvegicus)9068941PMID:31340140SynGOPMID:31340140 and REF_RGD_ID:155230699
CTSDHumanvesicle-mediated transport in synapse involved_inISOCtsd (Rattus norvegicus)9068941PMID:31340140SynGOPMID:31340140 and REF_RGD_ID:155230699
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Cellular Component
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CTSDHumancollagen-containing extracellular matrix located_inHDA 150520179 PMID:20551380 more ...BHF-UCLPMID:20551380 more ...
CTSDHumancytosol is_active_inIDA 150520179 PMID:12107093ARUK-UCLPMID:12107093
CTSDHumanendosome lumen is_active_inIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanendosome membrane located_inIDA 150520179 PMID:17188016ARUK-UCLPMID:17188016
CTSDHumanextracellular exosome located_inHDA 150520179 PMID:19056867 and PMID:23533145UniProtPMID:19056867 and PMID:23533145
CTSDHumanextracellular region located_inIEAUniProtKB-SubCell:SL-0112150520179 UniProtGO_REF:0000044
CTSDHumanextracellular region located_inHDA 150520179 PMID:27068509BHF-UCLPMID:27068509
CTSDHumanextracellular region located_inIEAUniProtKB-KW:KW-0964150520179 UniProtGO_REF:0000043
CTSDHumanextracellular region located_inTAS 150520179 ReactomeReactome:R-HSA-2471621 more ...
CTSDHumanextracellular region located_inNAS 150520179 PMID:14718574UniProtPMID:14718574
CTSDHumanextracellular space located_inHDA 150520179 PMID:16502470 and PMID:20551380UniProtPMID:16502470 and PMID:20551380
CTSDHumanextracellular space is_active_inIBAMGI:88562 and PANTHER:PTN008723784150520179 GO_CentralGO_REF:0000033
CTSDHumanextracellular space located_inISSUniProtKB:P00795150520179 PMID:22261194BHF-UCLPMID:22261194
CTSDHumanextracellular space located_inIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanficolin-1-rich granule lumen located_inTAS 150520179 ReactomeReactome:R-HSA-6800434
CTSDHumanGABA-ergic synapse is_active_inISOCtsd (Rattus norvegicus)9068941PMID:31340140SynGOPMID:31340140 and REF_RGD_ID:155230699
CTSDHumanlysosomal lumen located_inTAS 150520179 ReactomeReactome:R-HSA-2130349 more ...
CTSDHumanlysosomal membrane located_inIDA 150520179 PMID:17188016ARUK-UCLPMID:17188016
CTSDHumanlysosome located_inIEAUniProtKB-KW:KW-0458150520179 UniProtGO_REF:0000043
CTSDHumanlysosome located_inIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
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Molecular Function
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CTSDHumanaspartic-type endopeptidase activity enablesIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanaspartic-type endopeptidase activity enablesIBACGD:CAL0000197549 more ...150520179 GO_CentralGO_REF:0000033
CTSDHumanaspartic-type endopeptidase activity enablesIEAEC:3.4.23.5150520179 UniProtGO_REF:0000003
CTSDHumanaspartic-type endopeptidase activity enablesIEAInterPro:IPR001461 more ...150520179 InterProGO_REF:0000002
CTSDHumanaspartic-type endopeptidase activity enablesIEAUniProtKB-KW:KW-0064150520179 UniProtGO_REF:0000043
CTSDHumanaspartic-type endopeptidase activity enablesTAS 150520179 PMID:3927292PINCPMID:3927292
CTSDHumanaspartic-type peptidase activity enablesIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanaspartic-type peptidase activity enablesISSUniProtKB:P18242150520179 ARUK-UCLGO_REF:0000024
CTSDHumancysteine-type endopeptidase activity enablesTAS 150520179 ReactomeReactome:R-HSA-2130349 and Reactome:R-HSA-2130706
CTSDHumanendopeptidase activity  ISOCtsd (Rattus norvegicus)9068941 RGDPMID:11687729 more ...
CTSDHumanendopeptidase activity enablesIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanhydrolase activity enablesIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
CTSDHumanpeptidase activity enablesIEAUniProtKB:P18242 and ensembl:ENSMUSP00000121203150520179 EnsemblGO_REF:0000107
CTSDHumanpeptidase activity enablesIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
CTSDHumanpeptidase activity enablesIMP 150520179 PMID:17188016ARUK-UCLPMID:17188016
CTSDHumanpeptidase activity enablesIDA 150520179 PMID:16997486ARUK-UCLPMID:16997486
CTSDHumanpeptide binding  ISOCtsd (Rattus norvegicus)9068941 RGDPMID:8702598 and REF_RGD_ID:1625498
CTSDHumanprotein binding enablesIPIUniProtKB:I6L9I8 more ...150520179 PMID:32814053IntActPMID:32814053
CTSDHumanprotein binding enablesIPIUniProtKB:P28799 more ...150520179 PMID:28493053IntActPMID:28493053
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RGD Manual Annotations


  
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CTSDHumanchaperone mediated autophagy pathway   TAS 10755729 RGD 
CTSDHumanchaperone mediated autophagy pathway   TAS 10755730 RGD 

Imported Annotations - KEGG (archival)

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CTSDHumantuberculosis pathway  IEA 6907045 KEGGhsa:05152

Imported Annotations - PID (archival)

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CTSDHumanceramide signaling pathway  EXP 6484113 PIDPID:200119
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CTSDHumanApnea  IAGP 8699517 HPOMIM:610127
CTSDHumanAtaxia  IAGP 8699517 HPOMIM:610127
CTSDHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:610127
CTSDHumanCerebellar atrophy  IAGP 8699517 HPOMIM:610127
CTSDHumanCerebral atrophy  IAGP 8699517 HPOMIM:610127
CTSDHumanChildhood onset  IAGP 8699517 HPOMIM:610127
CTSDHumanCongenital onset  IAGP 8699517 HPOMIM:610127
CTSDHumanIncreased neuronal autofluorescent lipopigment  IAGP 8699517 HPOMIM:610127
CTSDHumanIntellectual disability, progressive  IAGP 8699517 HPOMIM:610127
CTSDHumanIntellectual disability, severe  IAGP 8699517 HPOMIM:610127
CTSDHumanLow-set ears  IAGP 8699517 HPOMIM:610127
CTSDHumanMental deterioration  IAGP 8699517 HPOMIM:610127
CTSDHumanMicrocephaly  IAGP 8699517 HPOMIM:610127
CTSDHumanMyoclonic seizure  IAGP 8699517 HPOMIM:610127
CTSDHumanNeonatal death  IAGP 8699517 HPOMIM:610127
CTSDHumanNeuronal loss in central nervous system  IAGP 8699517 HPOMIM:610127
CTSDHumanPremature closure of fontanelles  IAGP 8699517 HPOMIM:610127
CTSDHumanRespiratory failure  IAGP 8699517 HPOMIM:610127
CTSDHumanRespiratory insufficiency  IAGP 8699517 HPOMIM:610127
CTSDHumanRetinal atrophy  IAGP 8699517 HPOMIM:610127
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CTSDHumanExaggerated startle response  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Exaggerated startle responseClinVarPMID:25558065

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Reference Title
Reference Citation
1. Degradation of misfolded proteins in neurodegenerative diseases: therapeutic targets and strategies. Ciechanover A and Kwon YT, Exp Mol Med. 2015 Mar 13;47:e147. doi: 10.1038/emm.2014.117.
2. Predictive value of cathepsin-D for cervical lymph node metastasis in head and neck squamous cell carcinoma. Gandour-Edwards R, etal., Head Neck 1999 Dec;21(8):718-22.
3. Down-regulation of cathepsin-D expression by antisense gene transfer inhibits tumor growth and experimental lung metastasis of human breast cancer cells. Glondu M, etal., Oncogene 2002 Aug 1;21(33):5127-34.
4. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
5. Differential expression of cysteine and aspartic proteases during progression of atherosclerosis in apolipoprotein E-deficient mice. Jormsjo S, etal., Am J Pathol. 2002 Sep;161(3):939-45.
6. Non-replication of association between cathepsin D genotype and late onset Alzheimer disease. Menzer G, etal., Am J Med Genet 2001 Mar 8;105(2):179-82.
7. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
8. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. Role of chaperone-mediated autophagy in degrading Huntington's disease-associated huntingtin protein. Qi L and Zhang XD, Acta Biochim Biophys Sin (Shanghai). 2014 Feb;46(2):83-91. doi: 10.1093/abbs/gmt133. Epub 2013 Dec 8.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
14. Oxidative imbalance and cathepsin D changes as peripheral blood biomarkers of Alzheimer disease: a pilot study. Straface E, etal., FEBS Lett 2005 May 23;579(13):2759-66. Epub 2005 Apr 19.
15. Autophagy in the heart and liver during normal aging and calorie restriction. Wohlgemuth SE, etal., Rejuvenation Res. 2007 Sep;10(3):281-92.
16. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
1 to 16 of 16 rows
1 to 10 of 35 rows
PMID:938470   PMID:1522590   PMID:1692625   PMID:1734961   PMID:1837142   PMID:1883350   PMID:1939080   PMID:2013314   PMID:2069717   PMID:2180427   PMID:2350688   PMID:2736531  
PMID:3261170   PMID:3588310   PMID:3665421   PMID:3927292   PMID:3988746   PMID:6236213   PMID:7523115   PMID:7547509   PMID:7657720   PMID:7935485   PMID:8106429   PMID:8262386  
PMID:8393577   PMID:8419924   PMID:8467789   PMID:8671230   PMID:8889548   PMID:8930981   PMID:8943232   PMID:9076588   PMID:9275067   PMID:9349548   PMID:9731700   PMID:10504270  
PMID:10508159   PMID:10605825   PMID:10623764   PMID:10716266   PMID:10748089   PMID:10849758   PMID:10876156   PMID:10931940   PMID:10986284   PMID:11095076   PMID:11198280   PMID:11258665  
PMID:11264868   PMID:11341921   PMID:11436125   PMID:11581410   PMID:11687971   PMID:11779865   PMID:11780226   PMID:11786931   PMID:11840502   PMID:11906282   PMID:12011767   PMID:12083803  
PMID:12107093   PMID:12147324   PMID:12151789   PMID:12185597   PMID:12477932   PMID:12556904   PMID:12643545   PMID:12651610   PMID:12754519   PMID:12782337   PMID:12782632   PMID:12811635  
PMID:12826741   PMID:12970159   PMID:14702039   PMID:14718574   PMID:14744259   PMID:14767531   PMID:15003956   PMID:15081423   PMID:15158911   PMID:15168727   PMID:15192082   PMID:15211064  
PMID:15211070   PMID:15258139   PMID:15318816   PMID:15489334   PMID:15668295   PMID:15739123   PMID:15843343   PMID:15862967   PMID:15896324   PMID:15989967   PMID:16046058   PMID:16081416  
PMID:16127101   PMID:16263699   PMID:16263712   PMID:16331270   PMID:16335952   PMID:16341674   PMID:16354654   PMID:16396496   PMID:16417614   PMID:16502470   PMID:16543533   PMID:16608402  
PMID:16652347   PMID:16685649   PMID:16709808   PMID:16784755   PMID:16850161   PMID:16997486   PMID:17032648   PMID:17081065   PMID:17112520   PMID:17176069   PMID:17188016   PMID:17284061  
1 to 10 of 35 rows



CTSD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,752,755 - 1,763,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,752,752 - 1,764,573 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,773,985 - 1,785,157 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,730,561 - 1,741,798 (-)NCBINCBI36Build 36hg18NCBI36
Build 34111,730,560 - 1,741,798NCBI
Celera111,812,103 - 1,823,339 (-)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,564,872 - 1,576,226 (-)NCBIHuRef
CHM1_1111,772,933 - 1,784,154 (-)NCBICHM1_1
T2T-CHM13v2.0111,838,305 - 1,849,587 (-)NCBIT2T-CHM13v2.0
Ctsd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397141,929,647 - 141,941,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7141,929,648 - 141,941,775 (-)EnsemblGRCm39 Ensembl
GRCm387142,375,910 - 142,387,827 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,375,911 - 142,388,038 (-)EnsemblGRCm38mm10GRCm38
MGSCv377149,561,821 - 149,573,775 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367142,185,306 - 142,197,260 (-)NCBIMGSCv36mm8
Celera7142,131,673 - 142,143,627 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.93NCBI
Ctsd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81206,956,945 - 206,968,821 (-)NCBIGRCr8
mRatBN7.21197,527,467 - 197,539,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,527,467 - 197,539,488 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1205,900,151 - 205,912,026 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,986,334 - 212,998,210 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,660,486 - 205,672,362 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01215,541,570 - 215,553,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,541,542 - 215,553,451 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01222,436,922 - 222,448,798 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41202,619,669 - 202,631,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11202,779,384 - 202,791,261 (-)NCBI
Celera1195,146,345 - 195,158,236 (-)NCBICelera
Cytogenetic Map1q41NCBI
Ctsd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,576,202 - 13,584,298 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542213,576,315 - 13,584,267 (-)NCBIChiLan1.0ChiLan1.0
CTSD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,174,444 - 4,185,715 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,385,404 - 3,396,669 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,789,326 - 1,800,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,821,442 - 1,832,970 (-)NCBIpanpan1.1PanPan1.1panPan2
CTSD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,010,440 - 46,019,457 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,010,440 - 46,019,457 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1844,620,711 - 44,629,727 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01846,691,854 - 46,700,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1846,676,835 - 46,700,888 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,139,444 - 46,148,460 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,719,812 - 45,728,828 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,465,360 - 46,474,395 (-)NCBIUU_Cfam_GSD_1.0
Ctsd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,426,783 - 1,436,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936816680,798 - 691,039 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936816680,798 - 690,959 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTSD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,188,549 - 1,197,643 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.121,188,548 - 1,197,642 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTSD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,570,163 - 1,581,857 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11,570,069 - 1,581,833 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603898,757,257 - 98,768,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctsd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476714,660,936 - 14,671,671 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476714,661,058 - 14,671,116 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in CTSD
734 total Variants

1 to 10 of 837 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001909.5(CTSD):c.306C>T (p.Asn102=) single nucleotide variant Neuronal ceroid lipofuscinosis [RCV000549337] Chr11:1759562 [GRCh38]
Chr11:1780792 [GRCh37]
Chr11:11p15.5		 likely benign
NM_001909.5(CTSD):c.353-8C>T single nucleotide variant Neuronal ceroid lipofuscinosis [RCV000527734] Chr11:1759095 [GRCh38]
Chr11:1780325 [GRCh37]
Chr11:11p15.5		 likely benign
NM_001909.5(CTSD):c.131A>T (p.Glu44Val) single nucleotide variant not provided [RCV000520113] Chr11:1761406 [GRCh38]
Chr11:1782636 [GRCh37]
Chr11:11p15.5		 uncertain significance
NM_001909.5(CTSD):c.685T>A (p.Phe229Ile) single nucleotide variant Neuronal ceroid lipofuscinosis 10 [RCV000019134] Chr11:1757343 [GRCh38]
Chr11:1778573 [GRCh37]
Chr11:11p15.5		 pathogenic
NM_001909.5(CTSD):c.1149G>C (p.Trp383Cys) single nucleotide variant Neuronal ceroid lipofuscinosis 10 [RCV000019135] Chr11:1753593 [GRCh38]
Chr11:1774823 [GRCh37]
Chr11:11p15.5		 pathogenic
NM_001909.5(CTSD):c.764dup (p.Tyr255Ter) duplication Neuronal ceroid lipofuscinosis 10 [RCV000019136] Chr11:1754968..1754969 [GRCh38]
Chr11:1776198..1776199 [GRCh37]
Chr11:11p15.5		 pathogenic
NM_001909.4:c.486-12G>A single nucleotide variant Neuronal ceroid lipofuscinosis 10 [RCV000087099] Chr11:11p15.5 pathogenic
NM_001909.5(CTSD):c.924G>A (p.Val308=) single nucleotide variant Neuronal ceroid lipofuscinosis [RCV002060283]|not provided [RCV000521730] Chr11:1754042 [GRCh38]
Chr11:1775272 [GRCh37]
Chr11:11p15.5		 likely benign|uncertain significance
NM_001909.5(CTSD):c.199A>C (p.Ile67Leu) single nucleotide variant Neuronal ceroid lipofuscinosis [RCV000543988] Chr11:1761338 [GRCh38]
Chr11:1782568 [GRCh37]
Chr11:11p15.5		 uncertain significance
NM_001909.5(CTSD):c.566C>T (p.Thr189Ile) single nucleotide variant Neuronal ceroid lipofuscinosis 10 [RCV002476111]|Neuronal ceroid lipofuscinosis [RCV000548431] Chr11:1757462 [GRCh38]
Chr11:1778692 [GRCh37]
Chr11:11p15.5		 uncertain significance
1 to 10 of 837 rows

Predicted Target Of
Summary Value
Count of predictions:3119
Count of miRNA genes:890
Interacting mature miRNAs:1095
Transcripts:ENST00000236671, ENST00000367196, ENST00000429746, ENST00000433655, ENST00000438213, ENST00000497544
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597465084GWAS1561158_Hblood protein measurement QTL GWAS1561158 (human)8e-26blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1117625271762528Human
597494111GWAS1590185_Hcathepsin D measurement QTL GWAS1590185 (human)1e-50cathepsin D measurement1117611761761177Human
597522974GWAS1619048_Hcathepsin D measurement QTL GWAS1619048 (human)3e-105cathepsin D measurement1117625271762528Human
597166909GWAS1262983_Haspartate aminotransferase measurement QTL GWAS1262983 (human)6e-14aspartate aminotransferase measurementblood aspartate aminotransferase activity level (CMO:0000580)1117589751758976Human
597473877GWAS1569951_Hcathepsin D measurement QTL GWAS1569951 (human)7e-224cathepsin D measurement1117625271762528Human
597118973GWAS1215047_Hblood protein measurement QTL GWAS1215047 (human)7e-22blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1117558071755808Human
597103418GWAS1199492_Haspartate aminotransferase measurement QTL GWAS1199492 (human)9e-13aspartate aminotransferase measurementblood aspartate aminotransferase activity level (CMO:0000580)1117589751758976Human
596964857GWAS1084376_Hserum gamma-glutamyl transferase measurement, diet measurement QTL GWAS1084376 (human)0.00001serum gamma-glutamyl transferase measurement, diet measurement1117605601760561Human
597511664GWAS1607738_Hcathepsin D measurement QTL GWAS1607738 (human)2e-23cathepsin D measurement1117630701763071Human
597474579GWAS1570653_Hblood protein measurement QTL GWAS1570653 (human)3e-46blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1117625271762528Human

1 to 10 of 14 rows
ECD00297  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,844 - 1,781,760UniSTSGRCh37
Build 36111,737,420 - 1,738,336RGDNCBI36
Celera111,818,961 - 1,819,877RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,571,848 - 1,572,764UniSTS
ECD00346  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,977 - 1,777,889UniSTSGRCh37
Build 36111,733,553 - 1,734,465RGDNCBI36
Celera111,815,094 - 1,816,006RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,981 - 1,568,893UniSTS
ECD00599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,923 - 1,779,821UniSTSGRCh37
Build 36111,735,499 - 1,736,397RGDNCBI36
Celera111,817,040 - 1,817,938RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,927 - 1,570,825UniSTS
ECD00904  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,781,829 - 1,782,714UniSTSGRCh37
Build 36111,738,405 - 1,739,290RGDNCBI36
Celera111,819,946 - 1,820,831RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,572,833 - 1,573,718UniSTS
ECD00954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,777,996 - 1,778,879UniSTSGRCh37
Build 36111,734,572 - 1,735,455RGDNCBI36
Celera111,816,113 - 1,816,996RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,000 - 1,569,883UniSTS
ECD01139  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,774,253 - 1,775,129UniSTSGRCh37
Build 36111,730,829 - 1,731,705RGDNCBI36
Celera111,812,371 - 1,813,247RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,565,143 - 1,566,019UniSTS
ECD01325  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,028 - 1,776,897UniSTSGRCh37
Build 36111,732,604 - 1,733,473RGDNCBI36
Celera111,814,145 - 1,815,014RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,032 - 1,567,901UniSTS
ECD01352  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,779,905 - 1,780,773UniSTSGRCh37
Build 36111,736,481 - 1,737,349RGDNCBI36
Celera111,818,022 - 1,818,890RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,570,909 - 1,571,777UniSTS
ECD06238  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,986 - 1,783,700UniSTSGRCh37
Build 36111,739,562 - 1,740,276RGDNCBI36
Celera111,821,103 - 1,821,817RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,573,990 - 1,574,704UniSTS
ECD07271  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,755 - 1,784,441UniSTSGRCh37
Build 36111,740,331 - 1,741,017RGDNCBI36
Celera111,821,872 - 1,822,558RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,759 - 1,575,445UniSTS
ECD07571  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,784,472 - 1,785,150UniSTSGRCh37
Build 36111,741,048 - 1,741,726RGDNCBI36
Celera111,822,589 - 1,823,267RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,575,476 - 1,576,154UniSTS
ECD22944  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,785,364 - 1,785,567UniSTSGRCh37
Build 36111,741,940 - 1,742,143RGDNCBI36
Celera111,823,481 - 1,823,684RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,576,368 - 1,576,571UniSTS
REN61163  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,786,977 - 1,787,215UniSTSGRCh37
Build 36111,743,553 - 1,743,791RGDNCBI36
Celera111,825,094 - 1,825,332RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,577,982 - 1,578,220UniSTS
REN61164  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,786,770 - 1,787,001UniSTSGRCh37
Build 36111,743,346 - 1,743,577RGDNCBI36
Celera111,824,887 - 1,825,118RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,577,775 - 1,578,006UniSTS
REN61165  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,786,563 - 1,786,793UniSTSGRCh37
Build 36111,743,139 - 1,743,369RGDNCBI36
Celera111,824,680 - 1,824,910RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,577,568 - 1,577,798UniSTS
REN61166  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,785,566 - 1,785,793UniSTSGRCh37
Build 36111,742,142 - 1,742,369RGDNCBI36
Celera111,823,683 - 1,823,910RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,576,570 - 1,576,797UniSTS
REN61167  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,785,364 - 1,785,588UniSTSGRCh37
Build 36111,741,940 - 1,742,164RGDNCBI36
Celera111,823,481 - 1,823,705RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,576,368 - 1,576,592UniSTS
REN61168  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,784,417 - 1,784,651UniSTSGRCh37
Build 36111,740,993 - 1,741,227RGDNCBI36
Celera111,822,534 - 1,822,768RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,575,421 - 1,575,655UniSTS
REN61169  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,784,181 - 1,784,441UniSTSGRCh37
Build 36111,740,757 - 1,741,017RGDNCBI36
Celera111,822,298 - 1,822,558RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,575,185 - 1,575,445UniSTS
REN61170  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,954 - 1,784,194UniSTSGRCh37
Build 36111,740,530 - 1,740,770RGDNCBI36
Celera111,822,071 - 1,822,311RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,958 - 1,575,198UniSTS
REN61171  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,715 - 1,783,974UniSTSGRCh37
Build 36111,740,291 - 1,740,550RGDNCBI36
Celera111,821,832 - 1,822,091RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,719 - 1,574,978UniSTS
REN61172  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,482 - 1,783,734UniSTSGRCh37
Build 36111,740,058 - 1,740,310RGDNCBI36
Celera111,821,599 - 1,821,851RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,486 - 1,574,738UniSTS
REN61173  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,269 - 1,783,503UniSTSGRCh37
Build 36111,739,845 - 1,740,079RGDNCBI36
Celera111,821,386 - 1,821,620RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,273 - 1,574,507UniSTS
REN61174  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,051 - 1,783,277UniSTSGRCh37
Build 36111,739,627 - 1,739,853RGDNCBI36
Celera111,821,168 - 1,821,394RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,574,055 - 1,574,281UniSTS
REN61175  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,758 - 1,783,005UniSTSGRCh37
Build 36111,739,334 - 1,739,581RGDNCBI36
Celera111,820,875 - 1,821,122RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,573,762 - 1,574,009UniSTS
REN61176  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,539 - 1,782,777UniSTSGRCh37
Build 36111,739,115 - 1,739,353RGDNCBI36
Celera111,820,656 - 1,820,894RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,573,543 - 1,573,781UniSTS
REN61177  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,330 - 1,782,562UniSTSGRCh37
Build 36111,738,906 - 1,739,138RGDNCBI36
Celera111,820,447 - 1,820,679RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,573,334 - 1,573,566UniSTS
REN61178  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,119 - 1,782,343UniSTSGRCh37
Build 36111,738,695 - 1,738,919RGDNCBI36
Celera111,820,236 - 1,820,460RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,573,123 - 1,573,347UniSTS
REN61179  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,781,729 - 1,781,974UniSTSGRCh37
Build 36111,738,305 - 1,738,550RGDNCBI36
Celera111,819,846 - 1,820,091RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,572,733 - 1,572,978UniSTS
REN61180  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,781,522 - 1,781,749UniSTSGRCh37
Build 36111,738,098 - 1,738,325RGDNCBI36
Celera111,819,639 - 1,819,866RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,572,526 - 1,572,753UniSTS
REN61181  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,781,156 - 1,781,422UniSTSGRCh37
Build 36111,737,732 - 1,737,998RGDNCBI36
Celera111,819,273 - 1,819,539RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,572,160 - 1,572,426UniSTS
REN61182  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,952 - 1,781,178UniSTSGRCh37
Build 36111,737,528 - 1,737,754RGDNCBI36
Celera111,819,069 - 1,819,295RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,571,956 - 1,572,182UniSTS
REN61183  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,737 - 1,780,968UniSTSGRCh37
Build 36111,737,313 - 1,737,544RGDNCBI36
Celera111,818,854 - 1,819,085RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,571,741 - 1,571,972UniSTS
REN61184  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,438 - 1,780,670UniSTSGRCh37
Build 36111,737,014 - 1,737,246RGDNCBI36
Celera111,818,555 - 1,818,787RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,571,442 - 1,571,674UniSTS
REN61185  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,040 - 1,780,269UniSTSGRCh37
Build 36111,736,616 - 1,736,845RGDNCBI36
Celera111,818,157 - 1,818,386RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,571,044 - 1,571,273UniSTS
REN61186  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,779,795 - 1,780,020UniSTSGRCh37
Build 36111,736,371 - 1,736,596RGDNCBI36
Celera111,817,912 - 1,818,137RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,570,799 - 1,571,024UniSTS
REN61187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,779,559 - 1,779,819UniSTSGRCh37
Build 36111,736,135 - 1,736,395RGDNCBI36
Celera111,817,676 - 1,817,936RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,570,563 - 1,570,823UniSTS
REN61188  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,779,242 - 1,779,467UniSTSGRCh37
Build 36111,735,818 - 1,736,043RGDNCBI36
Celera111,817,359 - 1,817,584RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,570,246 - 1,570,471UniSTS
REN61189  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,779,021 - 1,779,263UniSTSGRCh37
Build 36111,735,597 - 1,735,839RGDNCBI36
Celera111,817,138 - 1,817,380RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,570,025 - 1,570,267UniSTS
REN61190  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,814 - 1,779,039UniSTSGRCh37
Build 36111,735,390 - 1,735,615RGDNCBI36
Celera111,816,931 - 1,817,156RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,818 - 1,570,043UniSTS
REN61191  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,565 - 1,778,820UniSTSGRCh37
Build 36111,735,141 - 1,735,396RGDNCBI36
Celera111,816,682 - 1,816,937RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,569 - 1,569,824UniSTS
REN61192  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,348 - 1,778,580UniSTSGRCh37
Build 36111,734,924 - 1,735,156RGDNCBI36
Celera111,816,465 - 1,816,697RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,352 - 1,569,584UniSTS
REN61193  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,777,994 - 1,778,246UniSTSGRCh37
Build 36111,734,570 - 1,734,822RGDNCBI36
Celera111,816,111 - 1,816,363RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,568,998 - 1,569,250UniSTS
REN61194  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,777,681 - 1,777,918UniSTSGRCh37
Build 36111,734,257 - 1,734,494RGDNCBI36
Celera111,815,798 - 1,816,035RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,568,685 - 1,568,922UniSTS
REN61195  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,777,324 - 1,777,573UniSTSGRCh37
Build 36111,733,900 - 1,734,149RGDNCBI36
Celera111,815,441 - 1,815,690RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,568,328 - 1,568,577UniSTS
REN61196  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,873 - 1,777,117UniSTSGRCh37
Build 36111,733,449 - 1,733,693RGDNCBI36
Celera111,814,990 - 1,815,234RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,877 - 1,568,121UniSTS
REN61197  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,650 - 1,776,889UniSTSGRCh37
Build 36111,733,226 - 1,733,465RGDNCBI36
Celera111,814,767 - 1,815,006RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,654 - 1,567,893UniSTS
REN61198  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,414 - 1,776,668UniSTSGRCh37
Build 36111,732,990 - 1,733,244RGDNCBI36
Celera111,814,531 - 1,814,785RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,418 - 1,567,672UniSTS
REN61199  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,776,209 - 1,776,437UniSTSGRCh37
Build 36111,732,785 - 1,733,013RGDNCBI36
Celera111,814,326 - 1,814,554RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,567,213 - 1,567,441UniSTS
REN61200  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,775,993 - 1,776,219UniSTSGRCh37
Build 36111,732,569 - 1,732,795RGDNCBI36
Celera111,814,111 - 1,814,336RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,566,998 - 1,567,223UniSTS
REN61203  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,775,300 - 1,775,524UniSTSGRCh37
Build 36111,731,876 - 1,732,100RGDNCBI36
Celera111,813,418 - 1,813,642RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,566,190 - 1,566,414UniSTS
REN61204  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,774,921 - 1,775,154UniSTSGRCh37
Build 36111,731,497 - 1,731,730RGDNCBI36
Celera111,813,039 - 1,813,272RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,565,811 - 1,566,044UniSTS
REN61205  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,774,684 - 1,774,931UniSTSGRCh37
Build 36111,731,260 - 1,731,507RGDNCBI36
Celera111,812,802 - 1,813,049RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,565,574 - 1,565,821UniSTS
REN61206  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,774,411 - 1,774,654UniSTSGRCh37
Build 36111,730,987 - 1,731,230RGDNCBI36
Celera111,812,529 - 1,812,772RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,565,301 - 1,565,544UniSTS
REN61207  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,774,178 - 1,774,420UniSTSGRCh37
Build 36111,730,754 - 1,730,996RGDNCBI36
Celera111,812,296 - 1,812,538RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,565,068 - 1,565,310UniSTS
REN61208  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,773,966 - 1,774,200UniSTSGRCh37
Build 36111,730,542 - 1,730,776RGDNCBI36
Celera111,812,084 - 1,812,318RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,564,856 - 1,565,090UniSTS
REN61209  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,773,717 - 1,773,987UniSTSGRCh37
Build 36111,730,293 - 1,730,563RGDNCBI36
Celera111,811,835 - 1,812,105RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,564,607 - 1,564,877UniSTS
REN61210  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,773,501 - 1,773,738UniSTSGRCh37
Build 36111,730,077 - 1,730,314RGDNCBI36
Celera111,811,619 - 1,811,856RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,564,391 - 1,564,628UniSTS
STS-M63138  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,773,647 - 1,773,802UniSTSGRCh37
Build 36111,730,223 - 1,730,378RGDNCBI36
Celera111,811,765 - 1,811,920RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,564,537 - 1,564,692UniSTS
GeneMap99-GB4 RH Map1122.72UniSTS
NCBI RH Map1110.0UniSTS
CTSD  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,553 - 1,778,786UniSTSGRCh37
Build 36111,735,129 - 1,735,362RGDNCBI36
Celera111,816,670 - 1,816,903RGD
Cytogenetic Map11p15.5UniSTS
HuRef111,569,557 - 1,569,790UniSTS
GeneMap99-GB4 RH Map1122.82UniSTS
NCBI RH Map1110.0UniSTS
MARC_10183-10184:1004371792:5  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,217 - 1,780,828UniSTSGRCh37
Build 36111,736,793 - 1,737,404RGDNCBI36
Celera111,818,334 - 1,818,945RGD
HuRef111,571,221 - 1,571,832UniSTS
stSG548467  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,778,839 - 1,780,581UniSTSGRCh37
Build 36111,735,415 - 1,737,157RGDNCBI36
Celera111,816,956 - 1,818,698RGD
HuRef111,569,843 - 1,571,585UniSTS
stSG548468  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,780,754 - 1,782,094UniSTSGRCh37
Build 36111,737,330 - 1,738,670RGDNCBI36
Celera111,818,871 - 1,820,211RGD
HuRef111,571,758 - 1,573,098UniSTS
stSG548469  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,782,075 - 1,783,642UniSTSGRCh37
Build 36111,738,651 - 1,740,218RGDNCBI36
Celera111,820,192 - 1,821,759RGD
HuRef111,573,079 - 1,574,646UniSTS
stSG548470  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37111,783,621 - 1,783,800UniSTSGRCh37
Build 36111,740,197 - 1,740,376RGDNCBI36
Celera111,821,738 - 1,821,917RGD
HuRef111,574,625 - 1,574,804UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2351 6 624 1951 465 2269 7305 6472 53 3734 1 852 1744 1616 175 1


1 to 22 of 22 rows
RefSeq Transcripts NG_008655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC068580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM762986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM976200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT020155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU794598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KU178008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L12980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M11233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S52557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S74689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 22 of 22 rows

Ensembl Acc Id: ENST00000236671   ⟹   ENSP00000236671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,755 - 1,763,927 (-)Ensembl
Ensembl Acc Id: ENST00000367196   ⟹   ENSP00000356164
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,755 - 1,762,403 (-)Ensembl
Ensembl Acc Id: ENST00000429746   ⟹   ENSP00000402586
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,755 - 1,764,573 (-)Ensembl
Ensembl Acc Id: ENST00000433655   ⟹   ENSP00000404902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,775 - 1,763,930 (-)Ensembl
Ensembl Acc Id: ENST00000438213   ⟹   ENSP00000415036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,753,383 - 1,763,927 (-)Ensembl
Ensembl Acc Id: ENST00000497544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,753,652 - 1,755,348 (-)Ensembl
Ensembl Acc Id: ENST00000636571   ⟹   ENSP00000490770
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,999 - 1,763,927 (-)Ensembl
Ensembl Acc Id: ENST00000636843   ⟹   ENSP00000490897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,753,313 - 1,763,948 (-)Ensembl
Ensembl Acc Id: ENST00000637158
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,753,140 - 1,758,033 (-)Ensembl
Ensembl Acc Id: ENST00000637381   ⟹   ENSP00000490316
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,762 - 1,763,964 (-)Ensembl
Ensembl Acc Id: ENST00000637387   ⟹   ENSP00000490598
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,753,206 - 1,763,941 (-)Ensembl
Ensembl Acc Id: ENST00000637815   ⟹   ENSP00000490344
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,752 - 1,763,906 (-)Ensembl
Ensembl Acc Id: ENST00000637915   ⟹   ENSP00000490471
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,788 - 1,763,896 (-)Ensembl
Ensembl Acc Id: ENST00000637937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,788 - 1,755,247 (-)Ensembl
Ensembl Acc Id: ENST00000677300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,757,342 - 1,760,510 (-)Ensembl
Ensembl Acc Id: ENST00000678991   ⟹   ENSP00000503019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,752,755 - 1,763,927 (-)Ensembl
RefSeq Acc Id: NM_001909   ⟹   NP_001900
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38111,752,755 - 1,763,927 (-)NCBI
GRCh37111,773,982 - 1,785,222 (-)ENTREZGENE
Build 36111,730,561 - 1,741,798 (-)NCBI Archive
HuRef111,564,872 - 1,576,226 (-)ENTREZGENE
CHM1_1111,772,933 - 1,784,154 (-)NCBI
T2T-CHM13v2.0111,838,305 - 1,849,587 (-)NCBI
Sequence:
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_001900   ⟸   NM_001909
- Peptide Label: preproprotein
- UniProtKB: Q6IB57 (UniProtKB/Swiss-Prot),   P07339 (UniProtKB/Swiss-Prot),   V9HWI3 (UniProtKB/TrEMBL),   A0A1B0GWE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000415036   ⟸   ENST00000438213
Ensembl Acc Id: ENSP00000490770   ⟸   ENST00000636571
Ensembl Acc Id: ENSP00000490897   ⟸   ENST00000636843
Ensembl Acc Id: ENSP00000490316   ⟸   ENST00000637381
Peptidase A1

Name Modeler Protein Id AA Range Protein Structure
AF-P07339-F1-model_v2 AlphaFold P07339 1-412 view protein structure

RGD ID:6788658
Promoter ID:HG_KWN:11928
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell
Transcripts:OTTHUMT00000105335,   OTTHUMT00000105336
Position:
Human AssemblyChrPosition (strand)Source
Build 36111,733,556 - 1,734,056 (-)MPROMDB
RGD ID:6788659
Promoter ID:HG_KWN:11931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3
Transcripts:OTTHUMT00000105337
Position:
Human AssemblyChrPosition (strand)Source
Build 36111,739,651 - 1,740,151 (-)MPROMDB
RGD ID:6788657
Promoter ID:HG_KWN:11932
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell_12Hour,   HeLa_S3,   K562
Transcripts:OTTHUMT00000105334
Position:
Human AssemblyChrPosition (strand)Source
Build 36111,740,371 - 1,740,871 (-)MPROMDB
RGD ID:6788421
Promoter ID:HG_KWN:11933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000407742,   NM_053005,   OTTHUMT00000104272,   OTTHUMT00000105340,   UC001LTQ.1,   UC009YDA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36111,741,644 - 1,742,144 (-)MPROMDB
RGD ID:7219283
Promoter ID:EPDNEW_H15387
Type:initiation region
Name:CTSD_2
Description:cathepsin D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15389  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38111,753,584 - 1,753,644EPDNEW
RGD ID:7219289
Promoter ID:EPDNEW_H15389
Type:initiation region
Name:CTSD_1
Description:cathepsin D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15387  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38111,763,927 - 1,763,987EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
COSMIC CTSD COSMIC
Ensembl Genes ENSG00000117984 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000236671 ENTREZGENE
  ENST00000236671.7 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.70.10 UniProtKB/Swiss-Prot
GTEx ENSG00000117984 GTEx
HGNC ID HGNC:2529 ENTREZGENE
Human Proteome Map CTSD Human Proteome Map
InterPro Aspartic_peptidase_A1 UniProtKB/Swiss-Prot
  Aspartic_peptidase_AS UniProtKB/Swiss-Prot
  Aspartic_peptidase_N UniProtKB/Swiss-Prot
  Cathepsin_D UniProtKB/Swiss-Prot
  PEPTIDASE_A1 UniProtKB/Swiss-Prot
  Peptidase_aspartic_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:1509 UniProtKB/Swiss-Prot
NCBI Gene 1509 ENTREZGENE
OMIM 116840 OMIM
PANTHER CATHEPSIN D UniProtKB/Swiss-Prot
  PTHR47966 UniProtKB/Swiss-Prot
Pfam A1_Propeptide UniProtKB/Swiss-Prot
  Asp UniProtKB/Swiss-Prot
PharmGKB PA27029 PharmGKB
PRINTS PEPSIN UniProtKB/Swiss-Prot
PROSITE ASP_PROTEASE UniProtKB/Swiss-Prot
  PEPTIDASE_A1 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50630 UniProtKB/Swiss-Prot
UniProt A0A0S2Z3L4_HUMAN UniProtKB/TrEMBL
  A0A1B0GV23_HUMAN UniProtKB/TrEMBL
  A0A1B0GVD5_HUMAN UniProtKB/TrEMBL
  A0A1B0GVP3_HUMAN UniProtKB/TrEMBL
  A0A1B0GW44_HUMAN UniProtKB/TrEMBL
  A0A1B0GWE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A7I2V2N3_HUMAN UniProtKB/TrEMBL
  C9JH19_HUMAN UniProtKB/TrEMBL
  CATD_HUMAN UniProtKB/Swiss-Prot
  F8W787_HUMAN UniProtKB/TrEMBL
  F8WD96_HUMAN UniProtKB/TrEMBL
  P07339 ENTREZGENE
  Q6IB57 ENTREZGENE
  V9HWI3 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 41 rows