DUSP4 (dual specificity phosphatase 4) - Rat Genome Database

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Gene: DUSP4 (dual specificity phosphatase 4) Homo sapiens
Analyze
Symbol: DUSP4
Name: dual specificity phosphatase 4
RGD ID: 1348525
HGNC Page HGNC:3070
Description: Enables MAP kinase serine/threonine phosphatase activity; protein tyrosine phosphatase activity; and protein tyrosine/threonine phosphatase activity. Involved in dephosphorylation and negative regulation of ERK1 and ERK2 cascade. Located in nucleoplasm.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: dual specificity protein phosphatase 4; dual specificity protein phosphatase hVH2; HVH2; MAP kinase phosphatase 2; mitogen-activated protein kinase phosphatase 2; MKP-2; MKP2; serine/threonine specific protein phosphatase; TYP; VH1 homologous phosphatase 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38829,333,064 - 29,350,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl829,333,064 - 29,350,684 (-)EnsemblGRCh38hg38GRCh38
GRCh37829,190,581 - 29,208,201 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36829,249,530 - 29,264,104 (-)NCBINCBI36Build 36hg18NCBI36
Build 34829,249,538 - 29,262,241NCBI
Celera828,153,208 - 28,167,802 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef827,734,943 - 27,752,631 (-)NCBIHuRef
CHM1_1829,392,567 - 29,410,254 (-)NCBICHM1_1
T2T-CHM13v2.0829,611,341 - 29,628,961 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Humanjuvenile rheumatoid arthritis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:19565504

1 to 20 of 194 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Human(+)-schisandrin B multiple interactionsISODusp4 (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of DUSP4 mRNA]CTDPMID:31150632
DUSP4Human(-)-demecolcine increases expressionEXP 6480464Demecolcine results in increased expression of DUSP4 mRNACTDPMID:23649840
DUSP4Human(-)-epigallocatechin 3-gallate increases expressionEXP 6480464epigallocatechin gallate results in increased expression of DUSP4 mRNACTDPMID:16084531
DUSP4Human(1->4)-beta-D-glucan multiple interactionsISODusp4 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of DUSP4 mRNACTDPMID:36331819
DUSP4Human1,2-dimethylhydrazine increases expressionISODusp4 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of DUSP4 mRNACTDPMID:22206623
DUSP4Human1-chloro-2,4-dinitrobenzene increases expressionISODusp4 (Mus musculus)6480464Dinitrochlorobenzene results in increased expression of DUSP4 mRNACTDPMID:18242016
DUSP4Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of DUSP4 mRNA and [Estradiol co-treated with TGFB1 protein] results in increased expression of DUSP4 mRNACTDPMID:19619570 and PMID:30165855
DUSP4Human17beta-estradiol increases expressionISODusp4 (Mus musculus)6480464Estradiol results in increased expression of DUSP4 mRNACTDPMID:19484750
DUSP4Human17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of DUSP4 mRNACTDPMID:19153601 more ...
DUSP4Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of DUSP4 mRNACTDPMID:16202921
DUSP4Human17beta-hydroxy-5alpha-androstan-3-one increases expressionEXP 6480464Dihydrotestosterone results in increased expression of DUSP4 mRNACTDPMID:29581250
DUSP4Human2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISODusp4 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
DUSP4Human2,2',5,5'-tetrachlorobiphenyl increases expressionEXP 64804642 more ...CTDPMID:36804509
DUSP4Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Estradiol co-treated with Tetrachlorodibenzodioxin] results in increased expression of DUSP4 mRNACTDPMID:19619570
DUSP4Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISODusp4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of DUSP4 mRNACTDPMID:33387578 and PMID:34747641
DUSP4Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISODusp4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of DUSP4 mRNACTDPMID:32109520
DUSP4Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISODusp4 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of DUSP4 mRNACTDPMID:21570461 and PMID:24680724
DUSP4Human2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of DUSP4 mRNACTDPMID:17101203 and PMID:19619570
DUSP4Human2,4-diaminotoluene increases expressionISODusp4 (Mus musculus)64804642 and 4-diaminotoluene results in increased expression of DUSP4 mRNACTDPMID:20713471
DUSP4Human2,4-dibromophenyl 2,4,5-tribromophenyl ether affects expressionISODusp4 (Mus musculus)64804642 more ...CTDPMID:38648751

1 to 20 of 194 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Humandephosphorylation involved_inIDA 150520179 PMID:24531476UniProtPMID:24531476
DUSP4Humanendoderm formation involved_inIBAPANTHER:PTN000017039 and ZFIN:ZDB-GENE-040426-709150520179 GO_CentralGO_REF:0000033
DUSP4Humannegative regulation of ERK1 and ERK2 cascade involved_inIMP 150520179 PMID:7535768UniProtPMID:7535768
DUSP4Humannegative regulation of MAPK cascade involved_inIBAFB:FBgn0036844 more ...150520179 GO_CentralGO_REF:0000033
DUSP4Humanprotein dephosphorylation  ISODusp4 (Rattus norvegicus)9068941 RGDPMID:12435803 and REF_RGD_ID:633811
DUSP4Humansignal transduction involved_inIBACGD:CAL0000191382 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Humancytoplasm is_active_inIBAFB:FBgn0036844 more ...150520179 GO_CentralGO_REF:0000033
DUSP4Humannucleoplasm located_inTAS 150520179 ReactomeReactome:R-HSA-203797
DUSP4Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
DUSP4Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
DUSP4Humannucleus is_active_inIBAPANTHER:PTN000806857 more ...150520179 GO_CentralGO_REF:0000033
DUSP4Humannucleus located_inIDA 150520179 PMID:7535768UniProtPMID:7535768
DUSP4Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043

Molecular Function
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Humanhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
DUSP4HumanMAP kinase serine/threonine phosphatase activity enablesIDA 150520179 PMID:7535768UniProtPMID:7535768
DUSP4HumanMAP kinase tyrosine/serine/threonine phosphatase activity  ISODusp4 (Rattus norvegicus)9068941 RGDPMID:7782322 and REF_RGD_ID:633293
DUSP4HumanMAP kinase tyrosine/serine/threonine phosphatase activity enablesIEAInterPro:IPR008343150520179 InterProGO_REF:0000002
DUSP4Humanphosphatase activity enablesIDA 150520179 PMID:24531476UniProtPMID:24531476
DUSP4Humanphosphoprotein phosphatase activity enablesIEAUniProtKB-KW:KW-0904150520179 UniProtGO_REF:0000043
DUSP4Humanphosphoprotein phosphatase activity enablesIBACGD:CAL0000191382 more ...150520179 GO_CentralGO_REF:0000033
DUSP4Humanphosphoprotein phosphatase activity enablesIEAARBA:ARBA00027651150520179 UniProtGO_REF:0000117
DUSP4Humanprotein binding enablesIPIUniProtKB:P45984150520179 PMID:25241761IntActPMID:25241761
DUSP4Humanprotein binding enablesIPIUniProtKB:P28482150520179 PMID:16038800 more ...IntActPMID:16038800 more ...
DUSP4Humanprotein binding enablesIPIUniProtKB:P28482 more ...150520179 PMID:32296183IntActPMID:32296183
DUSP4Humanprotein serine/threonine phosphatase activity enablesIEARHEA:20629 and RHEA:47004150520179 RHEAGO_REF:0000116
DUSP4Humanprotein serine/threonine phosphatase activity enablesIEAEC:3.1.3.16150520179 UniProtGO_REF:0000003
DUSP4Humanprotein tyrosine phosphatase activity enablesIEARHEA:10684150520179 RHEAGO_REF:0000116
DUSP4Humanprotein tyrosine phosphatase activity enablesIEAEC:3.1.3.48150520179 UniProtGO_REF:0000003
DUSP4Humanprotein tyrosine phosphatase activity enablesIDA 150520179 PMID:7535768UniProtPMID:7535768
DUSP4Humanprotein tyrosine phosphatase activity enablesTAS 150520179 ReactomeReactome:R-HSA-203797
DUSP4Humanprotein tyrosine/threonine phosphatase activity enablesIDA 150520179 PMID:7535768UniProtPMID:7535768
1 to 18 of 18 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DUSP4Humanmitogen activated protein kinase signaling pathway   IEA 6907045 KEGGhsa:04010

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Map kinase phosphatases (MKP's) are early responsive genes during induction of cerulein hyperstimulation pancreatitis. Hofken T, etal., Biochem Biophys Res Commun. 2000 Sep 24;276(2):680-5.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:7535768   PMID:8545112   PMID:8626452   PMID:8889548   PMID:9205128   PMID:10862698   PMID:11062068   PMID:11387337   PMID:12477932   PMID:15276183   PMID:15489334   PMID:16038800  
PMID:16344560   PMID:17145763   PMID:17322878   PMID:17452331   PMID:18178562   PMID:19415758   PMID:19525976   PMID:19843478   PMID:20124482   PMID:20339536   PMID:20725992   PMID:20860659  
PMID:21084841   PMID:21832049   PMID:21873635   PMID:21900206   PMID:22430215   PMID:22434910   PMID:22965873   PMID:23048029   PMID:23223570   PMID:23749251   PMID:23812841   PMID:23875912  
PMID:23966295   PMID:24222120   PMID:24308939   PMID:24531476   PMID:24658355   PMID:25027955   PMID:25204653   PMID:25241761   PMID:25281216   PMID:25733583   PMID:25847947   PMID:25943894  
PMID:26760575   PMID:26941286   PMID:27393618   PMID:27432908   PMID:27880917   PMID:27957827   PMID:28283554   PMID:28675297   PMID:29150975   PMID:29509059   PMID:29852174   PMID:31480854  
PMID:31653682   PMID:31801953   PMID:31839677   PMID:31980649   PMID:32296183   PMID:32505357   PMID:32613839   PMID:32890776   PMID:32951127   PMID:33402458   PMID:33495832   PMID:33621155  
PMID:33760201   PMID:33961781   PMID:34143206   PMID:34320342   PMID:34652441   PMID:34857952   PMID:34937541   PMID:35189148   PMID:35338857   PMID:35745205   PMID:35864956   PMID:36308185  
PMID:36576731   PMID:36705792   PMID:37086337   PMID:38071325   PMID:38254666   PMID:38262246   PMID:38286920   PMID:38824257  



DUSP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38829,333,064 - 29,350,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl829,333,064 - 29,350,684 (-)EnsemblGRCh38hg38GRCh38
GRCh37829,190,581 - 29,208,201 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36829,249,530 - 29,264,104 (-)NCBINCBI36Build 36hg18NCBI36
Build 34829,249,538 - 29,262,241NCBI
Celera828,153,208 - 28,167,802 (-)NCBICelera
Cytogenetic Map8p12NCBI
HuRef827,734,943 - 27,752,631 (-)NCBIHuRef
CHM1_1829,392,567 - 29,410,254 (-)NCBICHM1_1
T2T-CHM13v2.0829,611,341 - 29,628,961 (-)NCBIT2T-CHM13v2.0
Dusp4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39835,274,448 - 35,289,106 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl835,274,451 - 35,287,048 (+)EnsemblGRCm39 Ensembl
GRCm38834,807,610 - 34,819,894 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl834,807,297 - 34,819,894 (+)EnsemblGRCm38mm10GRCm38
MGSCv37835,870,664 - 35,882,948 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36836,276,127 - 36,288,411 (+)NCBIMGSCv36mm8
Celera837,423,596 - 37,435,832 (+)NCBICelera
Cytogenetic Map8A4NCBI
cM Map821.16NCBI
Dusp4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81664,079,893 - 64,101,396 (-)NCBIGRCr8
mRatBN7.21657,376,659 - 57,398,161 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1657,377,229 - 57,398,138 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1662,711,691 - 62,721,924 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01666,125,603 - 66,135,836 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01661,345,654 - 61,355,885 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01661,080,767 - 61,090,973 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1661,078,175 - 61,091,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01660,749,903 - 60,769,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41661,109,626 - 61,119,981 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11661,109,700 - 61,120,056 (-)NCBI
Celera1655,427,894 - 55,438,053 (-)NCBICelera
Cytogenetic Map16q12.2NCBI
Dusp4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554635,778,700 - 5,794,282 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554635,778,945 - 5,794,282 (-)NCBIChiLan1.0ChiLan1.0
DUSP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2747,882,880 - 47,900,548 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1823,598,583 - 23,616,218 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0828,623,777 - 28,641,432 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1825,816,714 - 25,834,307 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl825,819,989 - 25,834,332 (-)Ensemblpanpan1.1panPan2
DUSP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01636,828,592 - 36,844,313 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1636,828,997 - 36,841,190 (+)EnsemblROS_Cfam_1.0 Ensembl
Dusp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494344,363,746 - 44,376,514 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936573765,927 - 781,567 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936573765,954 - 778,524 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUSP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1555,491,087 - 55,508,455 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11555,491,084 - 55,508,460 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21562,906,062 - 62,923,413 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DUSP4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1827,459,455 - 27,473,811 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl827,456,430 - 27,473,352 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605214,654,175 - 14,671,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dusp4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248395,870,274 - 5,887,741 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in DUSP4
33 total Variants

1 to 10 of 114 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 8p23.1-11.21(chr8:12609975-42085703)x3 copy number gain See cases [RCV000050294] Chr8:12609975..42085703 [GRCh38]
Chr8:12467484..41943221 [GRCh37]
Chr8:12511855..42062378 [NCBI36]
Chr8:8p23.1-11.21
pathogenic
GRCh38/hg38 8p21.2-q11.21(chr8:25832130-48521849)x3 copy number gain See cases [RCV000050904] Chr8:25832130..48521849 [GRCh38]
Chr8:25689646..49434409 [GRCh37]
Chr8:25745563..49596962 [NCBI36]
Chr8:8p21.2-q11.21
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12728904-43673207)x3 copy number gain See cases [RCV000050912] Chr8:12728904..43673207 [GRCh38]
Chr8:12586413..43528350 [GRCh37]
Chr8:12630784..43647507 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12383584-36370018)x3 copy number gain See cases [RCV000051145] Chr8:12383584..36370018 [GRCh38]
Chr8:12241093..36227536 [GRCh37]
Chr8:12285464..36347088 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43336172)x3 copy number gain See cases [RCV000053630] Chr8:12609975..43336172 [GRCh38]
Chr8:12467484..43191315 [GRCh37]
Chr8:12511855..43310472 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12609975-43255410)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053631]|See cases [RCV000053631] Chr8:12609975..43255410 [GRCh38]
Chr8:12467484..43110553 [GRCh37]
Chr8:12511855..43229710 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-11.1(chr8:12750796-43532444)x3 copy number gain See cases [RCV000053632] Chr8:12750796..43532444 [GRCh38]
Chr8:12608305..43387587 [GRCh37]
Chr8:12652676..43506744 [NCBI36]
Chr8:8p23.1-11.1
pathogenic
GRCh38/hg38 8p23.1-12(chr8:12750796-29445409)x3 copy number gain See cases [RCV000053633] Chr8:12750796..29445409 [GRCh38]
Chr8:12608305..29302926 [GRCh37]
Chr8:12652676..29358845 [NCBI36]
Chr8:8p23.1-12
pathogenic
GRCh38/hg38 8p22-q11.21(chr8:14940110-47929925)x3 copy number gain See cases [RCV000053635] Chr8:14940110..47929925 [GRCh38]
Chr8:14797619..48842485 [GRCh37]
Chr8:14841990..49005038 [NCBI36]
Chr8:8p22-q11.21
pathogenic
GRCh38/hg38 8p23.1-11.23(chr8:12609975-37892000)x3 copy number gain See cases [RCV000053629] Chr8:12609975..37892000 [GRCh38]
Chr8:12467484..37749518 [GRCh37]
Chr8:12511855..37868676 [NCBI36]
Chr8:8p23.1-11.23
pathogenic
1 to 10 of 114 rows

Predicted Target Of
Summary Value
Count of predictions:2149
Count of miRNA genes:932
Interacting mature miRNAs:1107
Transcripts:ENST00000240100, ENST00000240101
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
406979664GWAS628640_Hheel bone mineral density QTL GWAS628640 (human)3e-08heel bone mineral densitybone mineral density (CMO:0001226)82934470629344707Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human

A004W39  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,190,723 - 29,190,843UniSTSGRCh37
Build 36829,246,642 - 29,246,762RGDNCBI36
Celera828,150,320 - 28,150,440RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,735,087 - 27,735,207UniSTS
GeneMap99-GB4 RH Map8116.89UniSTS
Whitehead-RH Map8117.5UniSTS
D8S1424E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,192,280 - 29,192,487UniSTSGRCh37
Build 36829,248,199 - 29,248,406RGDNCBI36
Celera828,151,877 - 28,152,084RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,736,644 - 27,736,851UniSTS
SGC35388  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,194,276 - 29,194,478UniSTSGRCh37
Build 36829,250,195 - 29,250,397RGDNCBI36
Celera828,153,873 - 28,154,075RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,738,640 - 27,738,842UniSTS
GeneMap99-GB4 RH Map8116.89UniSTS
Whitehead-RH Map8117.1UniSTS
RH18016  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,194,024 - 29,194,231UniSTSGRCh37
Build 36829,249,943 - 29,250,150RGDNCBI36
Celera828,153,621 - 28,153,828RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,738,388 - 27,738,595UniSTS
GeneMap99-GB4 RH Map8116.78UniSTS
RH36102  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,190,736 - 29,190,851UniSTSGRCh37
Build 36829,246,655 - 29,246,770RGDNCBI36
Celera828,150,333 - 28,150,448RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,735,100 - 27,735,215UniSTS
GeneMap99-GB4 RH Map8116.99UniSTS
WI-22140  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,202,647 - 29,202,792UniSTSGRCh37
Build 36829,258,566 - 29,258,711RGDNCBI36
Celera828,162,246 - 28,162,391RGD
Cytogenetic Map8p12-p11UniSTS
HuRef827,747,011 - 27,747,156UniSTS
GeneMap99-GB4 RH Map8116.99UniSTS
Whitehead-RH Map8117.7UniSTS
DUSP4_590.2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37829,194,006 - 29,194,849UniSTSGRCh37
Build 36829,249,925 - 29,250,768RGDNCBI36
Celera828,153,603 - 28,154,446RGD
HuRef827,738,370 - 27,739,213UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2438 2788 2245 4974 1725 2346 5 623 1902 464 2270 7262 6430 51 3734 1 852 1743 1613 174 1


1 to 18 of 18 rows
RefSeq Transcripts NM_001394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_057158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011544428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI123616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG760517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU742141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA645190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S80632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U21108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U48807 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 18 of 18 rows

Ensembl Acc Id: ENST00000240100   ⟹   ENSP00000240100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl829,333,064 - 29,350,684 (-)Ensembl
Ensembl Acc Id: ENST00000240101   ⟹   ENSP00000240101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl829,336,539 - 29,348,805 (-)Ensembl
RefSeq Acc Id: NM_001394   ⟹   NP_001385
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38829,333,064 - 29,350,684 (-)NCBI
GRCh37829,190,579 - 29,208,267 (-)ENTREZGENE
Build 36829,249,539 - 29,264,104 (-)NCBI Archive
HuRef827,734,943 - 27,752,631 (-)ENTREZGENE
CHM1_1829,392,567 - 29,410,254 (-)NCBI
T2T-CHM13v2.0829,611,341 - 29,628,961 (-)NCBI
Sequence:
RefSeq Acc Id: NM_057158   ⟹   NP_476499
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38829,333,064 - 29,348,805 (-)NCBI
GRCh37829,190,579 - 29,208,267 (-)ENTREZGENE
Build 36829,249,530 - 29,262,241 (-)NCBI Archive
HuRef827,734,943 - 27,752,631 (-)ENTREZGENE
CHM1_1829,392,567 - 29,408,309 (-)NCBI
T2T-CHM13v2.0829,611,341 - 29,627,082 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001385   ⟸   NM_001394
- Peptide Label: isoform 1
- UniProtKB: G5E930 (UniProtKB/Swiss-Prot),   D3DSU4 (UniProtKB/Swiss-Prot),   B2RBU5 (UniProtKB/Swiss-Prot),   Q13524 (UniProtKB/Swiss-Prot),   Q13115 (UniProtKB/Swiss-Prot),   Q13649 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_476499   ⟸   NM_057158
- Peptide Label: isoform 2
- UniProtKB: Q13115 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000240100   ⟸   ENST00000240100
Ensembl Acc Id: ENSP00000240101   ⟸   ENST00000240101
Name Modeler Protein Id AA Range Protein Structure
AF-Q13115-F1-model_v2 AlphaFold Q13115 1-394 view protein structure

RGD ID:6806644
Promoter ID:HG_KWN:61031
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:ENST00000404690
Position:
Human AssemblyChrPosition (strand)Source
Build 36829,258,786 - 29,259,592 (-)MPROMDB
RGD ID:6806614
Promoter ID:HG_KWN:61032
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid
Transcripts:NM_057158
Position:
Human AssemblyChrPosition (strand)Source
Build 36829,261,841 - 29,263,187 (-)MPROMDB
RGD ID:6806616
Promoter ID:HG_KWN:61033
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000257249,   OTTHUMT00000259143,   OTTHUMT00000259144
Position:
Human AssemblyChrPosition (strand)Source
Build 36829,263,391 - 29,265,107 (-)MPROMDB
RGD ID:7213009
Promoter ID:EPDNEW_H12250
Type:initiation region
Name:DUSP4_2
Description:dual specificity phosphatase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12251  EPDNEW_H12252  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38829,348,729 - 29,348,789EPDNEW
RGD ID:7213011
Promoter ID:EPDNEW_H12251
Type:initiation region
Name:DUSP4_3
Description:dual specificity phosphatase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12250  EPDNEW_H12252  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38829,350,323 - 29,350,383EPDNEW
RGD ID:7213013
Promoter ID:EPDNEW_H12252
Type:initiation region
Name:DUSP4_1
Description:dual specificity phosphatase 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H12250  EPDNEW_H12251  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38829,350,682 - 29,350,742EPDNEW


1 to 40 of 50 rows
Database
Acc Id
Source(s)
COSMIC DUSP4 COSMIC
Ensembl Genes ENSG00000120875 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000240100 ENTREZGENE
  ENST00000240100.7 UniProtKB/Swiss-Prot
  ENST00000240101 ENTREZGENE
  ENST00000240101.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.250.10 UniProtKB/Swiss-Prot
  3.90.190.10 UniProtKB/Swiss-Prot
GTEx ENSG00000120875 GTEx
HGNC ID HGNC:3070 ENTREZGENE
Human Proteome Map DUSP4 Human Proteome Map
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/Swiss-Prot
  MKP UniProtKB/Swiss-Prot
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot
  Rhodanese-like_dom UniProtKB/Swiss-Prot
  Rhodanese-like_dom_sf UniProtKB/Swiss-Prot
  Tyr_Pase_AS UniProtKB/Swiss-Prot
  Tyr_Pase_cat UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/Swiss-Prot
KEGG Report hsa:1846 UniProtKB/Swiss-Prot
NCBI Gene 1846 ENTREZGENE
OMIM 602747 OMIM
PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/Swiss-Prot
  DUAL SPECIFICITY PROTEIN PHOSPHATASE 4 UniProtKB/Swiss-Prot
Pfam DSPc UniProtKB/Swiss-Prot
  Rhodanese UniProtKB/Swiss-Prot
PharmGKB PA27527 PharmGKB
PIRSF MAPK_Ptase UniProtKB/Swiss-Prot
PRINTS MAPKPHPHTASE UniProtKB/Swiss-Prot
PROSITE RHODANESE_3 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_DUAL UniProtKB/Swiss-Prot
SMART DSPc UniProtKB/Swiss-Prot
  PTPc_motif UniProtKB/Swiss-Prot
  RHOD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot
  SSF52821 UniProtKB/Swiss-Prot
UniProt B2RBU5 ENTREZGENE
1 to 40 of 50 rows