CCDC7 (coiled-coil domain containing 7) - Rat Genome Database

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Gene: CCDC7 (coiled-coil domain containing 7) Homo sapiens
Analyze
Symbol: CCDC7
Name: coiled-coil domain containing 7
RGD ID: 1346795
HGNC Page HGNC:26533
Description: INTERACTS WITH (+)-catechin; all-trans-retinoic acid; butanal
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BIOT2; BioT2-A; BioT2-B; BioT2-C; C10orf68; coiled-coil domain-containing protein 7; dJ1104A8.1; FLJ13031; MGC149767; RP11-479G22.1; uncharacterized protein C10orf68
RGD Orthologs
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381032,443,324 - 32,882,864 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1032,446,140 - 32,882,874 (+)EnsemblGRCh38hg38GRCh38
GRCh371032,735,068 - 33,171,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361032,896,657 - 33,211,798 (+)NCBINCBI36Build 36hg18NCBI36
Build 341032,896,656 - 33,211,796NCBI
Celera1032,621,488 - 32,937,125 (+)NCBICelera
Cytogenetic Map10p11.22NCBI
HuRef1032,576,315 - 32,891,316 (+)NCBIHuRef
CHM1_11032,858,041 - 33,173,406 (+)NCBICHM1_1
T2T-CHM13v2.01032,474,832 - 32,911,592 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CCDC7Human(+)-catechin multiple interactionsEXP 6480464[Catechin co-treated with Grape Seed Proanthocyanidins] results in decreased expression of CCDC7 mRNACTDPMID:24763279
CCDC7Humanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of CCDC7 mRNACTDPMID:33167477
CCDC7Humanbisphenol A decreases expressionISOCcdc7b (Rattus norvegicus)6480464bisphenol A results in decreased expression of CCDC7 mRNACTDPMID:25181051
CCDC7Humanbutanal decreases expressionEXP 6480464butyraldehyde results in decreased expression of CCDC7 mRNACTDPMID:26079696
CCDC7Humancadmium dichloride increases expressionEXP 6480464Cadmium Chloride results in increased expression of CCDC7 mRNACTDPMID:38568856
CCDC7Humancannabidiol decreases expressionEXP 6480464Cannabidiol results in decreased expression of CCDC7 mRNACTDPMID:36519830
CCDC7HumanCGP 52608 multiple interactionsEXP 6480464CGP 52608 promotes the reaction [RORA protein binds to CCDC7 gene]CTDPMID:28238834
CCDC7Humancopper atom increases expressionISOCcdc7b (Rattus norvegicus)6480464Copper deficiency results in increased expression of CCDC7 mRNACTDPMID:26033743
CCDC7Humancopper atom multiple interactionsISOCcdc7b (Rattus norvegicus)6480464[Copper co-treated with Dietary Sucrose] results in increased expression of CCDC7 mRNACTDPMID:26033743
CCDC7Humancopper(0) multiple interactionsISOCcdc7b (Rattus norvegicus)6480464[Copper co-treated with Dietary Sucrose] results in increased expression of CCDC7 mRNACTDPMID:26033743
CCDC7Humancopper(0) increases expressionISOCcdc7b (Rattus norvegicus)6480464Copper deficiency results in increased expression of CCDC7 mRNACTDPMID:26033743
CCDC7Humanglyphosate affects methylationISOCcdc7b (Rattus norvegicus)6480464Glyphosate affects the methylation of CCDC7B geneCTDPMID:35440735
CCDC7Humanmethotrexate increases expressionEXP 6480464Methotrexate results in increased expression of CCDC7 mRNACTDPMID:24449571
CCDC7Humanmethoxychlor affects methylationISOCcdc7b (Rattus norvegicus)6480464Methoxychlor affects the methylation of CCDC7B geneCTDPMID:35440735
CCDC7Humansodium arsenite decreases expressionISOCcdc7a (Mus musculus)6480464sodium arsenite results in decreased expression of CCDC7A mRNACTDPMID:36209798
CCDC7Humansunitinib increases expressionEXP 6480464Sunitinib results in increased expression of CCDC7 mRNACTDPMID:31533062
CCDC7Humantrichloroethene increases expressionISOCcdc7b (Rattus norvegicus)6480464Trichloroethylene results in increased expression of CCDC7 mRNACTDPMID:33387578
CCDC7Humantriphenyl phosphate affects expressionEXP 6480464triphenyl phosphate affects the expression of CCDC7 mRNACTDPMID:37042841
CCDC7Humanvinclozolin increases expressionISOCcdc7b (Rattus norvegicus)6480464vinclozolin results in increased expression of CCDC7 mRNACTDPMID:23034163

1 to 19 of 19 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CCDC7Humanprotein binding enablesIPIUniProtKB:Q9UBU9150520179 PMID:32296183IntActPMID:32296183
CCDC7Humanprotein binding enablesIPIUniProtKB:P42858150520179 PMID:32814053IntActPMID:32814053


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:11181995   PMID:14702039   PMID:15489334   PMID:16189514   PMID:16344560   PMID:16385451   PMID:18984674   PMID:19277478   PMID:20379614   PMID:21109960   PMID:22024937   PMID:22145905  
PMID:24705354   PMID:29507755   PMID:29987050   PMID:30021884   PMID:30442662   PMID:30631154   PMID:31409639   PMID:32296183   PMID:32814053   PMID:34189442   PMID:34349018   PMID:35944360  
PMID:37788672   PMID:38334954  



CCDC7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381032,443,324 - 32,882,864 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1032,446,140 - 32,882,874 (+)EnsemblGRCh38hg38GRCh38
GRCh371032,735,068 - 33,171,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361032,896,657 - 33,211,798 (+)NCBINCBI36Build 36hg18NCBI36
Build 341032,896,656 - 33,211,796NCBI
Celera1032,621,488 - 32,937,125 (+)NCBICelera
Cytogenetic Map10p11.22NCBI
HuRef1032,576,315 - 32,891,316 (+)NCBIHuRef
CHM1_11032,858,041 - 33,173,406 (+)NCBICHM1_1
T2T-CHM13v2.01032,474,832 - 32,911,592 (+)NCBIT2T-CHM13v2.0
Ccdc7a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398129,460,715 - 129,791,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8129,460,716 - 129,791,998 (-)EnsemblGRCm39 Ensembl
GRCm388128,980,019 - 129,065,492 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8128,734,235 - 129,065,517 (-)EnsemblGRCm38mm10GRCm38
MGSCv378131,503,919 - 131,589,373 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368131,866,109 - 131,951,563 (-)NCBIMGSCv36mm8
Celera8133,283,939 - 133,369,328 (-)NCBICelera
Cytogenetic Map8E2NCBI
cM Map876.12NCBI
Ccdc7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81974,079,539 - 74,152,823 (+)NCBIGRCr8
mRatBN7.21957,182,480 - 57,255,764 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1957,182,509 - 57,255,763 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01961,807,661 - 62,158,361 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1962,054,137 - 62,158,327 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01972,735,312 - 72,802,986 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01972,697,890 - 72,720,983 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41959,154,101 - 59,213,047 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1956,497,557 - 56,568,598 (+)NCBICelera
Celera1956,096,059 - 56,395,892 (-)NCBICelera
Cytogenetic Map19q12NCBI
CCDC7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2845,096,133 - 45,520,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11045,101,458 - 45,526,478 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01032,575,904 - 33,006,517 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11033,162,045 - 33,591,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1033,162,045 - 33,591,497 (+)Ensemblpanpan1.1panPan2
CCDC7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.123,802,558 - 4,186,669 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha23,901,356 - 4,243,400 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024,128,279 - 4,483,116 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24,221,706 - 4,483,132 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.123,876,069 - 4,259,341 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.023,909,980 - 4,293,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024,030,539 - 4,413,940 (-)NCBIUU_Cfam_GSD_1.0
Ccdc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934411,677,766 - 11,911,812 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365741,183,961 - 1,263,010 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11055,711,092 - 56,052,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21061,369,113 - 61,414,326 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1931,773,123 - 32,184,079 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605640,779,928 - 41,243,208 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

.
Variants in CCDC7
49 total Variants

1 to 10 of 68 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_024688.2(CCDC7):c.827-25949G>A single nucleotide variant Malignant melanoma [RCV000068921] Chr10:32779066 [GRCh38]
Chr10:33067994 [GRCh37]
Chr10:33108000 [NCBI36]
Chr10:10p11.22
not provided
NM_024688.2(CCDC7):c.127G>A (p.Glu43Lys) single nucleotide variant Malignant melanoma [RCV000062031] Chr10:32686053 [GRCh38]
Chr10:32974981 [GRCh37]
Chr10:33014987 [NCBI36]
Chr10:10p11.22
not provided
NM_024688.2(CCDC7):c.555G>A (p.Lys185=) single nucleotide variant Malignant melanoma [RCV000062032] Chr10:32726798 [GRCh38]
Chr10:33015726 [GRCh37]
Chr10:33055732 [NCBI36]
Chr10:10p11.22
not provided
NM_024688.2(CCDC7):c.43+7149C>T single nucleotide variant Lung cancer [RCV000108950] Chr10:32591453 [GRCh38]
Chr10:32880381 [GRCh37]
Chr10:10p11.22
uncertain significance
NM_024688.2(CCDC7):c.154+1387T>C single nucleotide variant Lung cancer [RCV000108951] Chr10:32687467 [GRCh38]
Chr10:32976395 [GRCh37]
Chr10:10p11.22
uncertain significance
GRCh38/hg38 10p11.22-11.1(chr10:31999920-38119681)x3 copy number gain See cases [RCV000135414] Chr10:31999920..38119681 [GRCh38]
Chr10:32288848..38408609 [GRCh37]
Chr10:32328854..38448615 [NCBI36]
Chr10:10p11.22-11.1
pathogenic
GRCh38/hg38 10p12.31-11.22(chr10:19088161-32732293)x3 copy number gain See cases [RCV000139427] Chr10:19088161..32732293 [GRCh38]
Chr10:19377090..33021221 [GRCh37]
Chr10:19417096..33061227 [NCBI36]
Chr10:10p12.31-11.22
likely pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22
benign
GRCh37/hg19 10p11.22-11.21(chr10:32323692-37520394)x3 copy number gain Breast ductal adenocarcinoma [RCV000207153] Chr10:32323692..37520394 [GRCh37]
Chr10:10p11.22-11.21
uncertain significance
GRCh37/hg19 10p11.22(chr10:33086451-33279862) copy number gain Abnormal esophagus morphology [RCV000416878] Chr10:33086451..33279862 [GRCh37]
Chr10:10p11.22
likely benign
1 to 10 of 68 rows

Predicted Target Of
Summary Value
Count of predictions:1896
Count of miRNA genes:876
Interacting mature miRNAs:1013
Transcripts:ENST00000277657, ENST00000362006, ENST00000435402, ENST00000471905, ENST00000476558, ENST00000489718, ENST00000493685, ENST00000535327, ENST00000537047, ENST00000539197, ENST00000545067
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
597068131GWAS1164205_Hperipheral arterial disease, traffic air pollution measurement QTL GWAS1164205 (human)0.000002peripheral arterial disease, traffic air pollution measurement103251893332518934Human
597087504GWAS1183578_HPR interval QTL GWAS1183578 (human)5e-10PR intervalPR interval (CMO:0000233)103255903432559035Human
597031699GWAS1127773_Hattempted suicide QTL GWAS1127773 (human)0.000002attempted suicide103265708132657082Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human
597336464GWAS1432538_Hatrial fibrillation QTL GWAS1432538 (human)1e-09atrial fibrillation103248380632483807Human
406947885GWAS596861_HPR interval QTL GWAS596861 (human)2e-08PR intervalPR interval (CMO:0000233)103255903432559035Human
406975135GWAS624111_Hsuicide behaviour measurement QTL GWAS624111 (human)0.000002suicide behaviour measurement103270434032704341Human
597094568GWAS1190642_HFEV/FVC ratio, response to bronchodilator QTL GWAS1190642 (human)0.000004FEV/FVC ratio, response to bronchodilatorforced expiratory volume to forced vital capacity ratio (CMO:0000241)103287928732879288Human
597181815GWAS1277889_Hfocal segmental glomerulosclerosis QTL GWAS1277889 (human)0.0000004focal segmental glomerulosclerosis103268552732685528Human

1 to 10 of 10 rows
109YG3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371032,922,100 - 32,922,392UniSTSGRCh37
GRCh371032,922,073 - 32,922,392UniSTSGRCh37
Build 361032,962,079 - 32,962,398RGDNCBI36
Celera1032,686,914 - 32,687,204UniSTS
Celera1032,686,887 - 32,687,204RGD
Cytogenetic Map10p11.22UniSTS
HuRef1032,641,732 - 32,642,049UniSTS
HuRef1032,641,759 - 32,642,049UniSTS
Whitehead-RH Map10186.8UniSTS
Whitehead-YAC Contig Map10 UniSTS
NCBI RH Map10429.9UniSTS
RH104085  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371686,939,686 - 86,939,868UniSTSGRCh37
Build 361685,497,187 - 85,497,369RGDNCBI36
Celera1671,238,871 - 71,239,053RGD
Cytogenetic Map10p11.22UniSTS
HuRef1672,677,632 - 72,677,814UniSTS
RH119234  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371033,132,510 - 33,132,827UniSTSGRCh37
Build 361033,172,516 - 33,172,833RGDNCBI36
Celera1032,897,849 - 32,898,166RGD
Cytogenetic Map10p11.22UniSTS
HuRef1032,852,112 - 32,852,429UniSTS
TNG Radiation Hybrid Map1017501.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4973 1726 2349 6 624 1950 465 2269 7305 6471 53 3733 1 852 1743 1615 174 1


1 to 30 of 85 rows
RefSeq Transcripts NM_001026383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_109826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_109827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005252593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006717505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006717506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 85 rows

Ensembl Acc Id: ENST00000277657   ⟹   ENSP00000277657
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,446,140 - 32,574,564 (+)Ensembl
Ensembl Acc Id: ENST00000302316   ⟹   ENSP00000303710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,567,836 - 32,876,553 (+)Ensembl
Ensembl Acc Id: ENST00000362006   ⟹   ENSP00000355078
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,446,140 - 32,574,564 (+)Ensembl
Ensembl Acc Id: ENST00000375025   ⟹   ENSP00000364165
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,567,723 - 32,882,874 (+)Ensembl
Ensembl Acc Id: ENST00000375028   ⟹   ENSP00000364168
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,686,019 - 32,876,445 (+)Ensembl
Ensembl Acc Id: ENST00000476558   ⟹   ENSP00000436435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,446,140 - 32,574,560 (+)Ensembl
Ensembl Acc Id: ENST00000535327   ⟹   ENSP00000442531
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,451,621 - 32,518,433 (+)Ensembl
Ensembl Acc Id: ENST00000537047   ⟹   ENSP00000440632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,451,621 - 32,518,433 (+)Ensembl
Ensembl Acc Id: ENST00000539197   ⟹   ENSP00000441041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,451,621 - 32,518,433 (+)Ensembl
Ensembl Acc Id: ENST00000545067   ⟹   ENSP00000439930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,446,387 - 32,514,584 (+)Ensembl
Ensembl Acc Id: ENST00000638889
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,481,711 - 32,499,381 (+)Ensembl
Ensembl Acc Id: ENST00000639041   ⟹   ENSP00000490962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,543,300 - 32,574,484 (+)Ensembl
Ensembl Acc Id: ENST00000639290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,567,836 - 32,876,553 (+)Ensembl
Ensembl Acc Id: ENST00000639453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,512,465 - 32,543,386 (+)Ensembl
Ensembl Acc Id: ENST00000639629   ⟹   ENSP00000491655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,446,140 - 32,882,864 (+)Ensembl
Ensembl Acc Id: ENST00000640058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,543,326 - 32,544,437 (+)Ensembl
RefSeq Acc Id: NM_001026383   ⟹   NP_001021554
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,574,561 (+)NCBI
HuRef1032,454,722 - 32,891,316 (+)NCBI
CHM1_11032,736,425 - 32,864,884 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,603,242 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001321115   ⟹   NP_001308044
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
CHM1_11032,736,425 - 33,173,406 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,911,592 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001395015   ⟹   NP_001381944
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,911,592 (+)NCBI
RefSeq Acc Id: NM_001395233   ⟹   NP_001382162
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,978 - 32,731,608 (+)NCBI
T2T-CHM13v2.01032,475,662 - 32,760,315 (+)NCBI
RefSeq Acc Id: NM_145023   ⟹   NP_659460
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,574,561 (+)NCBI
HuRef1032,454,722 - 32,891,316 (+)NCBI
CHM1_11032,736,425 - 32,864,884 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,603,242 (+)NCBI
Sequence:
RefSeq Acc Id: NR_109826
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,574,561 (+)NCBI
HuRef1032,454,722 - 32,891,316 (+)NCBI
CHM1_11032,736,425 - 32,864,884 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,603,242 (+)NCBI
Sequence:
RefSeq Acc Id: NR_109827
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,514,587 (+)NCBI
HuRef1032,454,722 - 32,891,316 (+)NCBI
CHM1_11032,736,425 - 32,804,858 (+)NCBI
T2T-CHM13v2.01032,474,832 - 32,543,239 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006717505   ⟹   XP_006717568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006717506   ⟹   XP_006717569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519664   ⟹   XP_011517966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,871,124 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519666   ⟹   XP_011517968
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519667   ⟹   XP_011517969
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519668   ⟹   XP_011517970
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519669   ⟹   XP_011517971
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519670   ⟹   XP_011517972
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519671   ⟹   XP_011517973
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519672   ⟹   XP_011517974
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519673   ⟹   XP_011517975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519674   ⟹   XP_011517976
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519675   ⟹   XP_011517977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519676   ⟹   XP_011517978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519677   ⟹   XP_011517979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519678   ⟹   XP_011517980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519679   ⟹   XP_011517981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519680   ⟹   XP_011517982
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,463,017 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519683   ⟹   XP_011517985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,481,672 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519684   ⟹   XP_011517986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,824,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519686   ⟹   XP_011517988
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,750,152 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519687   ⟹   XP_011517989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,623,784 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519688   ⟹   XP_011517990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,664,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016638   ⟹   XP_016872127
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016640   ⟹   XP_016872129
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016641   ⟹   XP_016872130
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,469,421 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016642   ⟹   XP_016872131
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,469,421 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016643   ⟹   XP_016872132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,456,251 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016644   ⟹   XP_016872133
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,830,064 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016646   ⟹   XP_016872135
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,481,672 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016647   ⟹   XP_016872136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,824,571 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016648   ⟹   XP_016872137
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,544,734 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016649   ⟹   XP_016872138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,559,128 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016651   ⟹   XP_016872140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,697,278 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016652   ⟹   XP_016872141
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,559,120 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024448165   ⟹   XP_024303933
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024448166   ⟹   XP_024303934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047425742   ⟹   XP_047281698
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
RefSeq Acc Id: XM_047425743   ⟹   XP_047281699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,443,324 - 32,882,864 (+)NCBI
RefSeq Acc Id: XM_047425744   ⟹   XP_047281700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
RefSeq Acc Id: XM_047425746   ⟹   XP_047281702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,140 - 32,882,864 (+)NCBI
RefSeq Acc Id: XM_047425747   ⟹   XP_047281703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,456,251 - 32,882,864 (+)NCBI
RefSeq Acc Id: XM_047425748   ⟹   XP_047281704
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,564,994 - 32,882,864 (+)NCBI
1 to 30 of 77 rows
Protein RefSeqs NP_001021554 (Get FASTA)   NCBI Sequence Viewer  
  NP_001308044 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381944 (Get FASTA)   NCBI Sequence Viewer  
  NP_001382162 (Get FASTA)   NCBI Sequence Viewer  
  NP_659460 (Get FASTA)   NCBI Sequence Viewer  
  XP_006717568 (Get FASTA)   NCBI Sequence Viewer  
  XP_006717569 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517966 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517968 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517969 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517970 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517971 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517972 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517973 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517974 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517975 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517976 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517977 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517978 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517979 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517980 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517981 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517982 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517985 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517986 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517988 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517989 (Get FASTA)   NCBI Sequence Viewer  
  XP_011517990 (Get FASTA)   NCBI Sequence Viewer  
  XP_016872127 (Get FASTA)   NCBI Sequence Viewer  
  XP_016872129 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 77 rows
1 to 5 of 60 rows
1 to 5 of 60 rows
RefSeq Acc Id: NP_659460   ⟸   NM_145023
- Peptide Label: isoform a
- UniProtKB: A0A384NKY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001021554   ⟸   NM_001026383
- Peptide Label: isoform a
- UniProtKB: A0A384NKY2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006717568   ⟸   XM_006717505
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_006717569   ⟸   XM_006717506
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_011517969   ⟸   XM_011519667
- Peptide Label: isoform X6
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q96M83-F1-model_v2 AlphaFold Q96M83 1-1385 view protein structure

RGD ID:7217321
Promoter ID:EPDNEW_H14406
Type:initiation region
Name:CCDC7_1
Description:coiled-coil domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14407  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,046 - 32,446,106EPDNEW
RGD ID:7217323
Promoter ID:EPDNEW_H14407
Type:initiation region
Name:CCDC7_2
Description:coiled-coil domain containing 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14406  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381032,446,176 - 32,446,236EPDNEW


1 to 40 of 47 rows
Database
Acc Id
Source(s)
COSMIC CCDC7 COSMIC
Ensembl Genes ENSG00000216937 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000277657 ENTREZGENE
  ENST00000277657.12 UniProtKB/Swiss-Prot
  ENST00000362006 ENTREZGENE
  ENST00000362006.11 UniProtKB/Swiss-Prot
  ENST00000375028 ENTREZGENE
  ENST00000476558 ENTREZGENE
  ENST00000476558.7 UniProtKB/Swiss-Prot
  ENST00000545067 ENTREZGENE
  ENST00000639629 ENTREZGENE
  ENST00000639629.2 UniProtKB/Swiss-Prot
GTEx ENSG00000216937 GTEx
HGNC ID HGNC:26533 ENTREZGENE
Human Proteome Map CCDC7 Human Proteome Map
InterPro CCDC7 UniProtKB/Swiss-Prot
KEGG Report hsa:79741 UniProtKB/Swiss-Prot
NCBI Gene CCDC7 ENTREZGENE
OMIM 619444 OMIM
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot
  PTHR22035 UniProtKB/Swiss-Prot
Pfam BioT2 UniProtKB/Swiss-Prot
PharmGKB PA134879457 PharmGKB
UniProt A0A096LNG8_HUMAN UniProtKB/TrEMBL
  A0A0A6YYA4_HUMAN UniProtKB/TrEMBL
  A0A1B0GWZ1_HUMAN UniProtKB/TrEMBL
  A0A1W2PNE7_HUMAN UniProtKB/TrEMBL
  A0A384NKY2 ENTREZGENE, UniProtKB/TrEMBL
  A6YT98_HUMAN UniProtKB/TrEMBL
  A6YT99_HUMAN UniProtKB/TrEMBL
  A6YTA0_HUMAN UniProtKB/TrEMBL
  B0QZ71 ENTREZGENE
  CCDC7_HUMAN UniProtKB/Swiss-Prot
  Q08AN7 ENTREZGENE
  Q5VW55 ENTREZGENE
  Q8IVQ0 ENTREZGENE
  Q8N7T7 ENTREZGENE
  Q8NEQ0 ENTREZGENE
  Q96M83 ENTREZGENE
  Q9H943 ENTREZGENE
1 to 40 of 47 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-05-05 CCDC7  coiled-coil domain containing 7  CCDC7  coiled-coil domain containing 7  Data merged from RGD:1353671 737654 PROVISIONAL
2014-09-24 CCDC7  coiled-coil domain containing 7  C10orf68  chromosome 10 open reading frame 68  Symbol and/or name change 5135510 APPROVED