GWAS1277889_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1277889_H (focal segmental glomerulosclerosis QTL GWAS1277889 (human)) Homo sapiens

Symbol: GWAS1277889_H
Name: focal segmental glomerulosclerosis QTL GWAS1277889 (human)
RGD ID: 597181815
Trait: focal segmental glomerulosclerosis
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381032,685,527 - 32,685,528RGD_MAPPER_PIPELINEGRCh38
GRCh371032,974,455 - 32,974,456RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1277889_HHumanfocal segmental glomerulosclerosis  IAGPrs11595844405850206 GWAS_CATALOGPMID:36623684

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1277889_HHumanGlomerular sclerosis  IAGPrs11595844405850206 GWAS_CATALOGPMID:36623684
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1277889_HHumanfocal segmental glomerulosclerosis  IAGPrs11595844405850206 GWAS_CATALOGPMID:36623684

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346795CCDC7coiled-coil domain containing 7103244332432882864Human


Peak: (rs11595844)
Human AssemblyChrPosition (strand)Source
GRCh381032,685,527 - 32,685,528RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human
597181815GWAS1277889_Hfocal segmental glomerulosclerosis QTL GWAS1277889 (human)0.0000004focal segmental glomerulosclerosis103268552732685528Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1277889_H GCST90134617 Primary focal segmental glomerulosclerosis in chronic kidney disease 31 African American child cases, 107 African American child controls C 0.0 4E-7 6.398 rs11595844 6.29 focal segmental glomerulosclerosis (EFO:0004236)
 PMID:36623684
Database
Acc Id
Source(s)
GWAS Catalog GCST90134617 GWAS Catalog

Note Type Note Reference