GWAS596861_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS596861_H (PR interval QTL GWAS596861 (human)) Homo sapiens

Symbol: GWAS596861_H
Name: PR interval QTL GWAS596861 (human)
RGD ID: 406947885
Trait: PR interval
Measurement Type: PR interval   (CMO:0000233)    
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381032,559,034 - 32,559,035RGD_MAPPER_PIPELINEGRCh38
GRCh371032,847,962 - 32,847,963RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS596861_HHumanPR interval  IAGPrs2947080405850206Based on the EFO term IDGWAS_CATALOGPMID:32439900

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS596861_HHumanPR interval  IAGPrs2947080405850206 GWAS_CATALOGPMID:32439900

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346795CCDC7coiled-coil domain containing 7103244332432882864Human


Peak: (rs2947080)
Human AssemblyChrPosition (strand)Source
GRCh381032,559,034 - 32,559,035RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643515BW287_HBody Weight QTL 287 (human)2.450.0004Body weightBMI101842411044424110Human
597087504GWAS1183578_HPR interval QTL GWAS1183578 (human)5e-10PR intervalPR interval (CMO:0000233)103255903432559035Human
1300009BW22_HBody weight QTL 22 (human)2.32Body weightbody mass index101842411044424110Human
406947885GWAS596861_HPR interval QTL GWAS596861 (human)2e-08PR intervalPR interval (CMO:0000233)103255903432559035Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS596861_H GCST010320 PR interval 271,570 European ancestry individuals G 0.6433 2E-8 7.699 rs2947080 0.389 PR interval (EFO:0004462)
 PMID:32439900
GWAS1183578_H GCST010321 PR interval 271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals G 0.64 5E-10 9.302 rs2947080 0.41 PR interval (EFO:0004462)
 PMID:32439900
Database
Acc Id
Source(s)
GWAS Catalog GCST010320 GWAS Catalog

Note Type Note Reference