CELF5 (CUGBP Elav-like family member 5) - Rat Genome Database

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Gene: CELF5 (CUGBP Elav-like family member 5) Homo sapiens
Analyze
Symbol: CELF5
Name: CUGBP Elav-like family member 5
RGD ID: 1345217
HGNC Page HGNC:14058
Description: Predicted to enable mRNA binding activity. Involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: bruno-like 5 RNA binding protein; bruno-like protein 5; BRUNOL-5; BRUNOL5; CELF-5; CUG-BP and ETR-3 like factor 5; CUG-BP- and ETR-3-like factor 5; CUGBP, Elav-like family member 5; RNA-binding protein BRUNOL-5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,224,661 - 3,297,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,224,661 - 3,297,076 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,224,659 - 3,297,074 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,175,701 - 3,248,074 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,175,700 - 3,248,071NCBI
Celera193,161,110 - 3,233,889 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,992,255 - 3,064,363 (+)NCBIHuRef
CHM1_1193,224,288 - 3,296,678 (+)NCBICHM1_1
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CELF5HumanNeurodevelopmental Disorders  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
CELF5HumanRASopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: RASopathyClinVarPMID:23379592 more ...

1 to 20 of 82 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CELF5Human1,2-dimethylhydrazine decreases expressionISOCelf5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of CELF5 mRNACTDPMID:22206623
CELF5Human1-naphthyl isothiocyanate increases expressionISOCelf5 (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of CELF5 mRNACTDPMID:30723492
CELF5Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCelf5 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of CELF5 mRNACTDPMID:16962184
CELF5Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCelf5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of CELF5 mRNACTDPMID:33387578
CELF5Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCelf5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of CELF5 mRNACTDPMID:32109520
CELF5Human4,4'-sulfonyldiphenol decreases expressionISOCelf5 (Mus musculus)6480464bisphenol S results in decreased expression of CELF5 mRNACTDPMID:30951980
CELF5Human4,4'-sulfonyldiphenol affects methylationISOCelf5 (Mus musculus)6480464bisphenol S affects the methylation of CELF5 geneCTDPMID:31683443
CELF5Human6-propyl-2-thiouracil increases expressionISOCelf5 (Rattus norvegicus)6480464Propylthiouracil results in increased expression of CELF5 mRNACTDPMID:36843608
CELF5Human6-propyl-2-thiouracil decreases expressionISOCelf5 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of CELF5 mRNACTDPMID:30047161
CELF5Human7,12-dimethyltetraphene increases expressionISOCelf5 (Mus musculus)64804649 more ...CTDPMID:32553695
CELF5Humanacetamide increases expressionISOCelf5 (Rattus norvegicus)6480464acetamide results in increased expression of CELF5 mRNACTDPMID:31881176
CELF5Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of CELF5 3' UTR and Aflatoxin B1 results in increased methylation of CELF5 intronCTDPMID:30157460
CELF5HumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of CELF5 intronCTDPMID:30157460
CELF5Humanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of CELF5 mRNACTDPMID:21934132
CELF5Humanalpha-Zearalanol multiple interactionsISOCelf5 (Rattus norvegicus)6480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of CELF5 mRNACTDPMID:35163327
CELF5Humanamitrole decreases expressionISOCelf5 (Rattus norvegicus)6480464Amitrole results in decreased expression of CELF5 mRNACTDPMID:30047161 and PMID:38685447
CELF5Humanbenzo[a]pyrene increases mutagenesisEXP 6480464Benzo(a)pyrene results in increased mutagenesis of CELF5 geneCTDPMID:25435355
CELF5Humanbenzo[a]pyrene multiple interactionsISOCelf5 (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in increased expression of CELF5 mRNACTDPMID:27858113
CELF5Humanbenzo[a]pyrene increases expressionISOCelf5 (Mus musculus)6480464Benzo(a)pyrene metabolite results in increased expression of CELF5 mRNA and Benzo(a)pyrene results in increased expression of CELF5 mRNACTDPMID:23735875 and PMID:32553695
CELF5Humanbenzo[b]fluoranthene increases expressionISOCelf5 (Mus musculus)6480464benzo(b)fluoranthene results in increased expression of CELF5 mRNACTDPMID:26377693

1 to 20 of 82 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CELF5HumanmRNA processing involved_inIEAUniProtKB-KW:KW-0507150520179 UniProtGO_REF:0000043
CELF5HumanmRNA splice site recognition involved_inIBAMGI:1338822 more ...150520179 GO_CentralGO_REF:0000033
CELF5Humanregulation of alternative mRNA splicing, via spliceosome involved_inIDA 150520179 PMID:11158314UniProtPMID:11158314
CELF5Humanregulation of alternative mRNA splicing, via spliceosome involved_inIBAFB:FBgn0000114 more ...150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CELF5Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
CELF5Humancytoplasm is_active_inIBAFB:FBgn0000114 more ...150520179 GO_CentralGO_REF:0000033
CELF5Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
CELF5Humannucleus located_inISSUniProtKB:Q9BZC1150520179 PMID:11158314UniProtPMID:11158314
CELF5Humannucleus is_active_inIBAFB:FBgn0000114 more ...150520179 GO_CentralGO_REF:0000033
CELF5Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
CELF5Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
CELF5Humanribonucleoprotein complex part_ofIBAFB:FBgn0265297 more ...150520179 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CELF5HumanmRNA binding enablesIBAFB:FBgn0000114 more ...150520179 GO_CentralGO_REF:0000033
CELF5Humannucleic acid binding enablesIEAInterPro:IPR035979150520179 InterProGO_REF:0000002
CELF5Humanpre-mRNA binding enablesNAS 150520179 PMID:11158314UniProtPMID:11158314
CELF5Humanprotein binding enablesIPIUniProtKB:A0AV96 more ...150520179 PMID:32296183IntActPMID:32296183
CELF5HumanRNA binding enablesIEAUniProtKB-KW:KW-0694150520179 UniProtGO_REF:0000043
CELF5HumanRNA binding enablesIEAUniRule:UR000414619150520179 UniProtGO_REF:0000104
CELF5HumanRNA binding enablesIEAInterPro:IPR000504 and InterPro:IPR034648150520179 InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10893231   PMID:11158314   PMID:12477932   PMID:19757395   PMID:20889312   PMID:21873635   PMID:28514442   PMID:32296183   PMID:33961781   PMID:36774506  



CELF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,224,661 - 3,297,076 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,224,661 - 3,297,076 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,224,659 - 3,297,074 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,175,701 - 3,248,074 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,175,700 - 3,248,071NCBI
Celera193,161,110 - 3,233,889 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,992,255 - 3,064,363 (+)NCBIHuRef
CHM1_1193,224,288 - 3,296,678 (+)NCBICHM1_1
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBIT2T-CHM13v2.0
Celf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,295,061 - 81,318,564 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,295,061 - 81,318,543 (-)EnsemblGRCm39 Ensembl
GRCm381081,459,227 - 81,482,730 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,459,227 - 81,482,709 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,921,973 - 80,945,454 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,865,343 - 80,885,807 (-)NCBIMGSCv36mm8
Celera1082,482,165 - 82,506,092 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
Celf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,876,551 - 8,901,078 (+)NCBIGRCr8
mRatBN7.278,225,787 - 8,250,322 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,225,825 - 8,250,322 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,111,860 - 11,136,274 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0712,987,344 - 13,011,759 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0710,854,468 - 10,879,038 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,095,449 - 11,119,941 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,095,468 - 11,119,941 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,262,391 - 11,287,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,709,875 - 9,735,811 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera76,416,360 - 6,439,598 (+)NCBICelera
Cytogenetic Map7q11NCBI
Celf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,185,126 - 5,214,718 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,182,758 - 5,214,724 (-)NCBIChiLan1.0ChiLan1.0
CELF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,620,674 - 7,693,777 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,853,922 - 6,928,845 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,250,694 - 2,278,961 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,230,999 - 3,274,900 (+)NCBIpanpan1.1PanPan1.1panPan2
CELF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,027,245 - 56,075,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,029,575 - 56,075,948 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,751,352 - 55,799,556 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,686,152 - 56,734,387 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,686,738 - 56,734,681 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,741,712 - 55,789,866 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,225,332 - 56,273,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,424,157 - 56,472,338 (-)NCBIUU_Cfam_GSD_1.0
Celf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118215,947,705 - 215,982,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,852,126 - 1,887,240 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,864,793 - 1,887,082 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CELF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,314,834 - 75,364,103 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,314,808 - 75,364,189 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,956,800 - 75,987,394 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CELF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.162,988,764 - 3,065,099 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660815,518,308 - 5,594,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Celf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248285,982,552 - 6,005,839 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248285,980,299 - 6,015,202 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CELF5
29 total Variants

1 to 10 of 56 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 19p13.3(chr19:1565575-4108128)x3 copy number gain See cases [RCV000052878] Chr19:1565575..4108128 [GRCh38]
Chr19:1565574..4108126 [GRCh37]
Chr19:1516574..4059126 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:1972245-9648879)x3 copy number gain See cases [RCV000052879] Chr19:1972245..9648879 [GRCh38]
Chr19:1972244..9759555 [GRCh37]
Chr19:1923244..9620555 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3-13.2(chr19:265917-8564134)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052876]|See cases [RCV000052876] Chr19:265917..8564134 [GRCh38]
Chr19:265917..8629018 [GRCh37]
Chr19:216917..8535018 [NCBI36]
Chr19:19p13.3-13.2
pathogenic
GRCh38/hg38 19p13.3(chr19:233565-4699472)x3 copy number gain See cases [RCV000052575] Chr19:233565..4699472 [GRCh38]
Chr19:233565..4699484 [GRCh37]
Chr19:184565..4650484 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:2926238-4051635)x1 copy number loss See cases [RCV000053942] Chr19:2926238..4051635 [GRCh38]
Chr19:2926236..4051633 [GRCh37]
Chr19:2877236..4002633 [NCBI36]
Chr19:19p13.3
pathogenic
NM_001172673.1(CELF5):c.604-604C>A single nucleotide variant Lung cancer [RCV000101226] Chr19:3280595 [GRCh38]
Chr19:3280593 [GRCh37]
Chr19:19p13.3
uncertain significance
GRCh38/hg38 19p13.3(chr19:1549144-4288720)x1 copy number loss See cases [RCV000134795] Chr19:1549144..4288720 [GRCh38]
Chr19:1549143..4288717 [GRCh37]
Chr19:1500143..4239717 [NCBI36]
Chr19:19p13.3
pathogenic
GRCh38/hg38 19p13.3(chr19:3080621-4912622)x3 copy number gain See cases [RCV000137713] Chr19:3080621..4912622 [GRCh38]
Chr19:3080619..4912634 [GRCh37]
Chr19:3031619..4863634 [NCBI36]
Chr19:19p13.3
likely pathogenic
GRCh38/hg38 19p13.3(chr19:3080621-3730716)x3 copy number gain See cases [RCV000054107] Chr19:3080621..3730716 [GRCh38]
Chr19:3080619..3730714 [GRCh37]
Chr19:3031619..3681714 [NCBI36]
Chr19:19p13.3
uncertain significance
GRCh38/hg38 19p13.3(chr19:3223852-3306533)x3 copy number gain See cases [RCV000135138] Chr19:3223852..3306533 [GRCh38]
Chr19:3223850..3306531 [GRCh37]
Chr19:3174850..3257531 [NCBI36]
Chr19:19p13.3
likely benign
1 to 10 of 56 rows

Predicted Target Of
Summary Value
Count of predictions:4926
Count of miRNA genes:1121
Interacting mature miRNAs:1423
Transcripts:ENST00000292672, ENST00000334293, ENST00000541430, ENST00000586050, ENST00000588101, ENST00000588350, ENST00000589370, ENST00000591483
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597595070GWAS1651930_Heosinophil count QTL GWAS1651930 (human)2e-19eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
597108375GWAS1204449_Hself reported educational attainment QTL GWAS1204449 (human)2e-08self reported educational attainment1932374913237492Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
597237757GWAS1333831_Hcortical thickness QTL GWAS1333831 (human)4e-15cortical thickness1932835983283599Human
597593819GWAS1650679_Heosinophil count QTL GWAS1650679 (human)3e-22eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
597585300GWAS1642160_Heosinophil count QTL GWAS1642160 (human)2e-18eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
407023304GWAS672280_Hmental or behavioural disorder QTL GWAS672280 (human)0.000005mental or behavioural disorder1932512213251222Human
597211347GWAS1307421_Hself reported educational attainment QTL GWAS1307421 (human)3e-11self reported educational attainment1932747723274773Human

1 to 10 of 17 rows
D19S424  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37193,226,373 - 3,226,513UniSTSGRCh37
Build 36193,177,373 - 3,177,513RGDNCBI36
Celera193,162,782 - 3,162,922RGD
Cytogenetic Map19p13UniSTS
HuRef192,993,146 - 2,993,302UniSTS
Marshfield Genetic Map1910.97UniSTS
Marshfield Genetic Map1910.97RGD
Genethon Genetic Map1910.8UniSTS
deCODE Assembly Map1910.97UniSTS
SHGC-2315  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37193,226,382 - 3,226,498UniSTSGRCh37
Build 36193,177,382 - 3,177,498RGDNCBI36
Celera193,162,791 - 3,162,907RGD
Cytogenetic Map19p13UniSTS
HuRef192,993,155 - 2,993,287UniSTS
TNG Radiation Hybrid Map190.0UniSTS
A009O27  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37193,296,027 - 3,296,157UniSTSGRCh37
Build 36193,247,027 - 3,247,157RGDNCBI36
Celera193,232,843 - 3,232,973RGD
Cytogenetic Map19p13UniSTS
HuRef193,063,319 - 3,063,448UniSTS
GeneMap99-GB4 RH Map1929.69UniSTS
G32708  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37193,296,027 - 3,296,157UniSTSGRCh37
Celera193,232,843 - 3,232,973UniSTS
Cytogenetic Map19p13UniSTS
HuRef193,063,319 - 3,063,448UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1055 2376 2575 2003 4906 1630 2208 4 569 1428 409 2140 6254 5516 43 3692 757 1692 1527 168 1


1 to 30 of 41 rows
RefSeq Transcripts NG_052949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006722832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006722833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006722836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006722837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006722838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011528174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017027111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001753733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007066936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008485177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_430147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA448420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB209067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC006505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 41 rows

Ensembl Acc Id: ENST00000292672   ⟹   ENSP00000292672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,224,661 - 3,297,076 (+)Ensembl
Ensembl Acc Id: ENST00000334293   ⟹   ENSP00000335182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,225,485 - 3,297,016 (+)Ensembl
Ensembl Acc Id: ENST00000541430   ⟹   ENSP00000443498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,224,704 - 3,296,336 (+)Ensembl
Ensembl Acc Id: ENST00000586050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,270,614 - 3,290,347 (+)Ensembl
Ensembl Acc Id: ENST00000588101
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,282,257 - 3,286,791 (+)Ensembl
Ensembl Acc Id: ENST00000588350   ⟹   ENSP00000468503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,273,905 - 3,297,076 (+)Ensembl
Ensembl Acc Id: ENST00000589370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,270,621 - 3,282,453 (+)Ensembl
Ensembl Acc Id: ENST00000591483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl193,284,762 - 3,293,401 (+)Ensembl
RefSeq Acc Id: NM_001172673   ⟹   NP_001166144
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
GRCh37193,224,701 - 3,297,074 (+)RGD
Celera193,161,110 - 3,233,889 (+)RGD
HuRef192,992,255 - 3,064,363 (+)RGD
CHM1_1193,224,289 - 3,296,678 (+)NCBI
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021938   ⟹   NP_068757
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
GRCh37193,224,701 - 3,297,074 (+)RGD
Build 36193,175,701 - 3,248,074 (+)NCBI Archive
Celera193,161,110 - 3,233,889 (+)RGD
HuRef192,992,255 - 3,064,363 (+)RGD
CHM1_1193,224,288 - 3,296,678 (+)NCBI
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
Sequence:
RefSeq Acc Id: NR_033342
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,225,278 - 3,297,076 (+)NCBI
GRCh37193,224,701 - 3,297,074 (+)RGD
Celera193,161,110 - 3,233,889 (+)RGD
HuRef192,992,255 - 3,064,363 (+)RGD
CHM1_1193,225,070 - 3,296,678 (+)NCBI
T2T-CHM13v2.0193,200,157 - 3,272,447 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006722832   ⟹   XP_006722895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006722833   ⟹   XP_006722896
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006722836   ⟹   XP_006722899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,270,577 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006722837   ⟹   XP_006722900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,225,278 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006722838   ⟹   XP_006722901
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,271,173 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528173   ⟹   XP_011526475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,270,577 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011528174   ⟹   XP_011526476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,271,170 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017027111   ⟹   XP_016882600
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,275,014 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XM_054321693   ⟹   XP_054177668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321694   ⟹   XP_054177669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321695   ⟹   XP_054177670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,246,539 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321696   ⟹   XP_054177671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,246,536 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321697   ⟹   XP_054177672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,245,990 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321698   ⟹   XP_054177673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,200,157 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321699   ⟹   XP_054177674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,246,014 - 3,272,447 (+)NCBI
RefSeq Acc Id: XM_054321700   ⟹   XP_054177675
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,250,381 - 3,272,447 (+)NCBI
RefSeq Acc Id: XR_001753733
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
Sequence:
RefSeq Acc Id: XR_007066936
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,270,577 - 3,297,076 (+)NCBI
RefSeq Acc Id: XR_008485175
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
RefSeq Acc Id: XR_008485176
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,199,540 - 3,272,447 (+)NCBI
RefSeq Acc Id: XR_008485177
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0193,245,994 - 3,272,447 (+)NCBI
RefSeq Acc Id: XR_430147
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,661 - 3,297,076 (+)NCBI
Sequence:
1 to 30 of 32 rows
Protein RefSeqs NP_001166144 (Get FASTA)   NCBI Sequence Viewer  
  NP_068757 (Get FASTA)   NCBI Sequence Viewer  
  XP_006722895 (Get FASTA)   NCBI Sequence Viewer  
  XP_006722896 (Get FASTA)   NCBI Sequence Viewer  
  XP_006722899 (Get FASTA)   NCBI Sequence Viewer  
  XP_006722900 (Get FASTA)   NCBI Sequence Viewer  
  XP_006722901 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526475 (Get FASTA)   NCBI Sequence Viewer  
  XP_011526476 (Get FASTA)   NCBI Sequence Viewer  
  XP_016882600 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177668 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177669 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177670 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177671 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177672 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177673 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177674 (Get FASTA)   NCBI Sequence Viewer  
  XP_054177675 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27666 (Get FASTA)   NCBI Sequence Viewer  
  AAF86231 (Get FASTA)   NCBI Sequence Viewer  
  AAH28101 (Get FASTA)   NCBI Sequence Viewer  
  AAK07476 (Get FASTA)   NCBI Sequence Viewer  
  BAD92304 (Get FASTA)   NCBI Sequence Viewer  
  BAG57444 (Get FASTA)   NCBI Sequence Viewer  
  EAW69327 (Get FASTA)   NCBI Sequence Viewer  
  EAW69328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000292672
  ENSP00000292672.1
  ENSP00000443498
  ENSP00000443498.1
1 to 30 of 32 rows
1 to 5 of 22 rows
1 to 5 of 22 rows
RefSeq Acc Id: NP_001166144   ⟸   NM_001172673
- Peptide Label: isoform 2
- UniProtKB: Q8N6W0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_068757   ⟸   NM_021938
- Peptide Label: isoform 1
- UniProtKB: Q9BZC0 (UniProtKB/Swiss-Prot),   Q86VW6 (UniProtKB/Swiss-Prot),   Q59GP2 (UniProtKB/Swiss-Prot),   O75253 (UniProtKB/Swiss-Prot),   D6W614 (UniProtKB/Swiss-Prot),   Q9NR86 (UniProtKB/Swiss-Prot),   Q8N6W0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006722895   ⟸   XM_006722832
- Peptide Label: isoform X1
- UniProtKB: Q9BZC0 (UniProtKB/Swiss-Prot),   Q86VW6 (UniProtKB/Swiss-Prot),   Q59GP2 (UniProtKB/Swiss-Prot),   O75253 (UniProtKB/Swiss-Prot),   D6W614 (UniProtKB/Swiss-Prot),   Q9NR86 (UniProtKB/Swiss-Prot),   Q8N6W0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006722896   ⟸   XM_006722833
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006722900   ⟸   XM_006722837
- Peptide Label: isoform X3
- Sequence:
RRM

Name Modeler Protein Id AA Range Protein Structure
AF-Q8N6W0-F1-model_v2 AlphaFold Q8N6W0 1-485 view protein structure

RGD ID:7237999
Promoter ID:EPDNEW_H24746
Type:initiation region
Name:CELF5_1
Description:CUGBP Elav-like family member 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38193,224,725 - 3,224,785EPDNEW
RGD ID:6811513
Promoter ID:HG_ACW:39236
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:BRUNOL5.EAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 36193,235,621 - 3,236,121 (+)MPROMDB


1 to 40 of 41 rows
Database
Acc Id
Source(s)
COSMIC CELF5 COSMIC
Ensembl Genes ENSG00000161082 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000292672 ENTREZGENE
  ENST00000292672.7 UniProtKB/Swiss-Prot
  ENST00000334293 ENTREZGENE
  ENST00000541430 ENTREZGENE
  ENST00000541430.6 UniProtKB/Swiss-Prot
  ENST00000588350 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
GTEx ENSG00000161082 GTEx
HGNC ID HGNC:14058 ENTREZGENE
Human Proteome Map CELF5 Human Proteome Map
InterPro CELF3/4/5/6_RRM1 UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report hsa:60680 UniProtKB/Swiss-Prot
NCBI Gene 60680 ENTREZGENE
OMIM 612680 OMIM
PANTHER RNA BINDING PROTEIN UniProtKB/Swiss-Prot
Pfam RRM_1 UniProtKB/Swiss-Prot
PharmGKB PA25429 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
UniProt B4DFI3_HUMAN UniProtKB/TrEMBL
  CELF5_HUMAN UniProtKB/Swiss-Prot
  D6W614 ENTREZGENE
  K7ES14_HUMAN UniProtKB/TrEMBL
  O75253 ENTREZGENE
  Q59GP2 ENTREZGENE
  Q86VW6 ENTREZGENE
  Q8N6W0 ENTREZGENE
  Q9BZC0 ENTREZGENE
  Q9NR86 ENTREZGENE
UniProt Secondary D6W614 UniProtKB/Swiss-Prot
  O75253 UniProtKB/Swiss-Prot
  Q59GP2 UniProtKB/Swiss-Prot
  Q86VW6 UniProtKB/Swiss-Prot
  Q9BZC0 UniProtKB/Swiss-Prot
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-01-24 CELF5  CUGBP Elav-like family member 5    CUGBP, Elav-like family member 5  Symbol and/or name change 5135510 APPROVED
2011-07-27 CELF5  CUGBP, Elav-like family member 5  BRUNOL5  bruno-like 5, RNA binding protein (Drosophila)  Symbol and/or name change 5135510 APPROVED