GWAS1651930_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1651930_H (eosinophil count QTL GWAS1651930 (human)) Homo sapiens

Symbol: GWAS1651930_H
Name: eosinophil count QTL GWAS1651930 (human)
RGD ID: 597595070
Trait: eosinophil quantity   (VT:0002602)    
Measurement Type: blood eosinophil count   (CMO:0000033)    
LOD Score: Not Available
P Value: 2.0E-19
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38193,235,088 - 3,235,089RGD_MAPPER_PIPELINEGRCh38
GRCh37193,235,086 - 3,235,087RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651930_HHumanblood eosinophil count  IAGPrs79926321405850206 GWAS_CATALOGPMID:39024449

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651930_HHumaneosinophil quantity  IAGPrs79926321405850206 GWAS_CATALOGPMID:39024449

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1651930_HHumaneosinophil count  IAGPrs79926321405850206 GWAS_CATALOGPMID:39024449

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1345217CELF5CUGBP Elav-like family member 51932246613297076Human


Peak: (rs79926321)
Human AssemblyChrPosition (strand)Source
GRCh38193,235,088 - 3,235,089RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298499UAE1_HUrinary albumin excretion QTL 1 (human)2.730.0009Urinary albumin excretionurine albumin:creatinine ratio (ACR)19116075902Human
597595070GWAS1651930_Heosinophil count QTL GWAS1651930 (human)2e-19eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
1643451SLIPL6_HSerum lipid level QTL 6 (human)2.190.0008Lipid level19116075902Human
597593819GWAS1650679_Heosinophil count QTL GWAS1650679 (human)3e-22eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
1581534BP76_HBlood pressure QTL 76 (human)20.001Blood pressurepulse pressure19116075902Human
1581535BP65_HBlood pressure QTL 65 (human)3.10.001Blood pressurepulse pressure19116075902Human
597585300GWAS1642160_Heosinophil count QTL GWAS1642160 (human)2e-18eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
2314591INSUL4_HInsulin level QTL 4 (human)3.80.000038Insulin levelfasting19116075902Human
597586144GWAS1643004_Heosinophil count QTL GWAS1643004 (human)5e-17eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)1932350883235089Human
1298476BP3_HBlood pressure QTL 3 (human)2.4Blood pressuresystolic19116075902Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1651930_H GCST90475297 eosinophil (fraction, maximum, inv-norm transformed) 335,542 European ancestry individuals C 0.9841 2E-19 18.699 rs79926321 0.105 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1642160_H GCST90479602 eosinophil (absolute count, mean, inv-norm transformed) 90,448 African American or Afro-Caribbean individuals, 42,397 Hispanic or Latin American individuals, 3,996 East Asian ancestry individuals, 310,757 European ancestry individuals C 0.9871 2E-18 17.699 rs79926321 0.129 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1643004_H GCST90479604 eosinophil (fraction, maximum, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.9871 5E-17 16.302 rs79926321 0.1134 eosinophil count (EFO:0004842)
 PMID:39024449
None Available GCST90479605 eosinophil (fraction, mean, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.9871 2E-18 17.699 rs79926321 0.1243 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1650679_H GCST90475300 eosinophil (fraction, mean, inv-norm transformed) 335,542 European ancestry individuals C 0.9841 3E-22 21.523 rs79926321 0.1163 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1800480_H GCST90475520 mean platelet volume (MPV, mean, inv-norm transformed) 335,593 European ancestry individuals C 0.9842 1E-11 11 rs79926321 0.08674 platelet volume (OBA:0003277)
 PMID:39024449
GWAS1800569_H GCST90475517 mean platelet volume (MPV, maximum, inv-norm transformed) 335,593 European ancestry individuals C 0.9842 1E-12 12 rs79926321 0.09052 platelet volume (OBA:0003277)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90475297 GWAS Catalog

Note Type Note Reference