RAPGEF5 (Rap guanine nucleotide exchange factor 5) - Rat Genome Database

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Gene: RAPGEF5 (Rap guanine nucleotide exchange factor 5) Homo sapiens
Analyze
Symbol: RAPGEF5
Name: Rap guanine nucleotide exchange factor 5
RGD ID: 1343059
HGNC Page HGNC:16862
Description: Enables GTP-dependent protein binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in Ras protein signal transduction. Located in nuclear body.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GFR; guanine nucleotide exchange factor for Rap1; KIAA0277; M-Ras-regulated GEF; M-Ras-regulated Rap GEF; MR-GEF; MRGEF; Rap guanine nucleotide exchange factor (GEF) 5; related to Epac; REPAC
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38722,118,236 - 22,357,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl722,118,236 - 22,357,154 (-)EnsemblGRCh38hg38GRCh38
GRCh37722,157,854 - 22,396,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36722,124,433 - 22,363,058 (-)NCBINCBI36Build 36hg18NCBI36
Celera722,143,557 - 22,382,091 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef722,043,471 - 22,243,092 (-)NCBIHuRef
CHM1_1722,158,708 - 22,397,156 (-)NCBICHM1_1
T2T-CHM13v2.0722,254,475 - 22,493,270 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2722,209,210 - 22,447,742 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5Humandilated cardiomyopathy 1A  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Dilated cardiomyopathy 1AClinVar 
RAPGEF5Humanhypomyelinating leukodystrophy 5  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hypomyelination and Congenital CataractClinVarPMID:18022865 more ...
RAPGEF5Humanpleomorphic xanthoastrocytoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
RAPGEF5Humanprimary ciliary dyskinesia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Primary ciliary dyskinesiaClinVarPMID:18022865 more ...
RAPGEF5Humanprimary ciliary dyskinesia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Primary ciliary dyskinesiaClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5Humanamphetamine abuse  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:18316681

1 to 20 of 91 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5Human1,2-dimethylhydrazine decreases expressionISORapgef5 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of RAPGEF5 mRNACTDPMID:22206623
RAPGEF5Human17beta-estradiol decreases expressionISORapgef5 (Rattus norvegicus)6480464Estradiol results in decreased expression of RAPGEF5 mRNACTDPMID:32145629
RAPGEF5Human17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of RAPGEF5 mRNACTDPMID:31614463
RAPGEF5Human17beta-estradiol decreases expressionISORapgef5 (Mus musculus)6480464Estradiol results in decreased expression of RAPGEF5 mRNACTDPMID:39298647
RAPGEF5Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of RAPGEF5 mRNACTDPMID:20106945 and PMID:21632981
RAPGEF5Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORapgef5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of RAPGEF5 mRNACTDPMID:34747641
RAPGEF5Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORapgef5 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of RAPGEF5 mRNACTDPMID:32109520 and PMID:33387578
RAPGEF5Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORapgef5 (Mus musculus)6480464[TIPARP gene mutant form results in increased susceptibility to Tetrachlorodibenzodioxin] which results in decreased expression of RAPGEF5 mRNACTDPMID:25975270
RAPGEF5Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORapgef5 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of RAPGEF5 mRNACTDPMID:21570461
RAPGEF5Human3,4-methylenedioxymethamphetamine decreases expressionISORapgef5 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in decreased expression of RAPGEF5 mRNACTDPMID:26251327
RAPGEF5Human4,4'-sulfonyldiphenol decreases methylationEXP 6480464bisphenol S results in decreased methylation of RAPGEF5 geneCTDPMID:31601247
RAPGEF5Human4-hydroxyphenyl retinamide increases expressionISORapgef5 (Mus musculus)6480464Fenretinide results in increased expression of RAPGEF5 mRNACTDPMID:28973697
RAPGEF5Humanaflatoxin B1 decreases methylationEXP 6480464Aflatoxin B1 results in decreased methylation of RAPGEF5 gene and Aflatoxin B1 results in decreased methylation of RAPGEF5 intronCTDPMID:27153756 and PMID:30157460
RAPGEF5HumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of RAPGEF5 intronCTDPMID:30157460
RAPGEF5Humanantirheumatic drug increases expressionEXP 6480464Antirheumatic Agents results in increased expression of RAPGEF5 mRNACTDPMID:24449571
RAPGEF5Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of RAPGEF5 mRNACTDPMID:33212167
RAPGEF5Humanarsenous acid decreases expressionEXP 6480464Arsenic Trioxide results in decreased expression of RAPGEF5 mRNACTDPMID:26705709
RAPGEF5Humanbenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of RAPGEF5 mRNACTDPMID:20106945
RAPGEF5Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of RAPGEF5 5' UTR more ...CTDPMID:27901495 and PMID:30157460
RAPGEF5Humanbenzo[a]pyrene increases expressionISORapgef5 (Mus musculus)6480464Benzo(a)pyrene results in increased expression of RAPGEF5 mRNACTDPMID:21964900 more ...

1 to 20 of 91 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5Humanintracellular signal transduction involved_inIEAInterPro:IPR000591150520179 InterProGO_REF:0000002
RAPGEF5Humannervous system development involved_inNAS 150520179 PMID:10486569UniProtPMID:10486569
RAPGEF5HumanRas protein signal transduction involved_inIBACGD:CAL0000178834 more ...150520179 GO_CentralGO_REF:0000033
RAPGEF5Humansmall GTPase-mediated signal transduction involved_inIEAInterPro:IPR001895 more ...150520179 InterProGO_REF:0000002
RAPGEF5Humansmall GTPase-mediated signal transduction involved_inNAS 150520179 PMID:10486569UniProtPMID:10486569

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5Humannuclear body located_inIDA 150520179 HPAGO_REF:0000052
RAPGEF5Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
RAPGEF5Humannucleus located_inIDA 150520179 PMID:10486569UniProtPMID:10486569
RAPGEF5Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
RAPGEF5Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
RAPGEF5Humanplasma membrane is_active_inIBAFB:FBgn0001965 more ...150520179 GO_CentralGO_REF:0000033

Molecular Function

  

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RAPGEF5HumanDilated cardiomyopathy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: CARDIOMYOPATHY and CONGESTIVEClinVar 
RAPGEF5HumanPleomorphic xanthoastrocytoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8561895   PMID:9039502   PMID:10486569   PMID:10777494   PMID:10934204   PMID:12477932   PMID:12690205   PMID:15342556   PMID:15489334   PMID:15856025   PMID:17725712   PMID:17903292  
PMID:20379614   PMID:21546767   PMID:21873635   PMID:21988832   PMID:26871637   PMID:28514442   PMID:29507755   PMID:30021884   PMID:31452512   PMID:31629934   PMID:33961781   PMID:37705041  
PMID:38489970   PMID:38775215  



RAPGEF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38722,118,236 - 22,357,154 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl722,118,236 - 22,357,154 (-)EnsemblGRCh38hg38GRCh38
GRCh37722,157,854 - 22,396,773 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36722,124,433 - 22,363,058 (-)NCBINCBI36Build 36hg18NCBI36
Celera722,143,557 - 22,382,091 (-)NCBICelera
Cytogenetic Map7p15.3NCBI
HuRef722,043,471 - 22,243,092 (-)NCBIHuRef
CHM1_1722,158,708 - 22,397,156 (-)NCBICHM1_1
T2T-CHM13v2.0722,254,475 - 22,493,270 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2722,209,210 - 22,447,742 (-)NCBI
Rapgef5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912117,480,146 - 117,723,472 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12117,480,099 - 117,723,472 (+)EnsemblGRCm39 Ensembl
GRCm3812117,516,526 - 117,759,737 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12117,516,479 - 117,759,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712118,754,952 - 118,995,451 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612117,958,488 - 118,198,654 (+)NCBIMGSCv36mm8
MGSCv3612111,717,001 - 111,958,157 (+)NCBIMGSCv36mm8
Cytogenetic Map12F2NCBI
cM Map1263.06NCBI
Rapgef5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86144,588,162 - 144,822,908 (+)NCBIGRCr8
mRatBN7.26138,445,184 - 138,679,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6138,437,991 - 138,679,936 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6141,880,425 - 142,115,425 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06138,497,846 - 138,732,849 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06139,052,896 - 139,287,512 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06145,387,890 - 145,625,243 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6145,546,595 - 145,625,236 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06154,308,057 - 154,541,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46144,949,908 - 145,030,090 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6136,254,550 - 136,332,824 (+)NCBICelera
Cytogenetic Map6q33NCBI
Rapgef5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541024,525,748 - 24,716,372 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541024,525,748 - 24,716,151 (-)NCBIChiLan1.0ChiLan1.0
RAPGEF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2626,984,630 - 27,225,479 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1775,309,356 - 75,550,210 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0722,806,855 - 23,047,663 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1722,118,332 - 22,317,650 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl722,122,434 - 22,317,650 (-)Ensemblpanpan1.1panPan2
RAPGEF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11435,979,393 - 36,208,849 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1435,982,444 - 36,209,214 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1435,520,950 - 35,750,469 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01435,904,738 - 36,135,155 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1435,904,768 - 36,135,551 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11436,024,971 - 36,254,867 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01435,721,839 - 35,951,074 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01436,057,456 - 36,287,333 (-)NCBIUU_Cfam_GSD_1.0
Rapgef5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511880,185,677 - 80,381,255 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365467,864,608 - 8,051,356 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365467,860,795 - 8,051,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAPGEF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl990,958,078 - 91,578,992 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1990,958,078 - 91,232,256 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29100,401,677 - 100,899,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAPGEF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12135,894,481 - 36,132,041 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2135,940,360 - 36,133,715 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604268,454,107 - 68,689,515 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rapgef5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247398,427,796 - 8,610,694 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247398,388,172 - 8,614,469 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in RAPGEF5
50 total Variants

1 to 10 of 81 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3
pathogenic
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2
pathogenic
GRCh38/hg38 7p21.2-15.2(chr7:16234212-26167278)x3 copy number gain See cases [RCV000053531] Chr7:16234212..26167278 [GRCh38]
Chr7:16273837..26206898 [GRCh37]
Chr7:16240362..26173423 [NCBI36]
Chr7:7p21.2-15.2
pathogenic
NM_012294.3(RAPGEF5):c.905C>T (p.Ser302Phe) single nucleotide variant Malignant melanoma [RCV000067819] Chr7:22162461 [GRCh38]
Chr7:22202079 [GRCh37]
Chr7:22168604 [NCBI36]
Chr7:7p15.3
not provided
NM_012294.3(RAPGEF5):c.1548+315G>A single nucleotide variant Lung cancer [RCV000105953] Chr7:22146582 [GRCh38]
Chr7:22186200 [GRCh37]
Chr7:7p15.3
uncertain significance
GRCh38/hg38 7p21.1-15.2(chr7:20210912-27849400)x1 copy number loss See cases [RCV000134333] Chr7:20210912..27849400 [GRCh38]
Chr7:20250535..27889019 [GRCh37]
Chr7:20217060..27855544 [NCBI36]
Chr7:7p21.1-15.2
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:54185-26827634)x3 copy number gain See cases [RCV000136557] Chr7:54185..26827634 [GRCh38]
Chr7:54185..26867253 [GRCh37]
Chr7:149268..26833778 [NCBI36]
Chr7:7p22.3-15.2
pathogenic
1 to 10 of 81 rows

Predicted Target Of
Summary Value
Count of predictions:5372
Count of miRNA genes:1374
Interacting mature miRNAs:1842
Transcripts:ENST00000344041, ENST00000401957, ENST00000405243, ENST00000420196, ENST00000451559, ENST00000458533, ENST00000468825, ENST00000471484, ENST00000475788, ENST00000488366, ENST00000497668
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407302085GWAS951061_Hunipolar depression QTL GWAS951061 (human)0.0000001unipolar depression72224273322242734Human
596970870GWAS1090389_Hmajor depressive disorder QTL GWAS1090389 (human)0.0000001major depressive disorder72224273322242734Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human
597061821GWAS1157895_Hsusceptibility to childhood ear infection measurement QTL GWAS1157895 (human)0.000001response to infection trait (VT:0010434)72215881322158814Human
406924170GWAS573146_Hglaucoma QTL GWAS573146 (human)2e-08glaucoma72225349822253499Human
597109307GWAS1205381_Hmajor depressive disorder QTL GWAS1205381 (human)0.0000001major depressive disorder72224273322242734Human
597106809GWAS1202883_Hcytokine measurement QTL GWAS1202883 (human)0.000006cytokine measurementblood cytokine measurement (CMO:0001924)72212375422123755Human
597093336GWAS1189410_Hresponse to glucocorticoid, osteonecrosis QTL GWAS1189410 (human)0.000004response to glucocorticoid, osteonecrosis72214746222147463Human
596964922GWAS1084441_Hglaucoma QTL GWAS1084441 (human)2e-08glaucoma72225349822253499Human
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human

1 to 10 of 14 rows
D7S2510  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,177,578 - 22,177,774UniSTSGRCh37
GRCh37722,177,505 - 22,177,620UniSTSGRCh37
Build 36722,144,103 - 22,144,299RGDNCBI36
Celera722,163,232 - 22,163,428RGD
Celera722,163,159 - 22,163,274UniSTS
Cytogenetic Map7p15.3UniSTS
HuRef722,063,071 - 22,063,186UniSTS
HuRef722,063,144 - 22,063,344UniSTS
CRA_TCAGchr7v2722,228,883 - 22,229,078UniSTS
CRA_TCAGchr7v2722,228,810 - 22,228,925UniSTS
Marshfield Genetic Map737.51RGD
Genethon Genetic Map736.7UniSTS
deCODE Assembly Map738.32UniSTS
Whitehead-YAC Contig Map7 UniSTS
D7S1429  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,360,008 - 22,360,134UniSTSGRCh37
Build 36722,326,533 - 22,326,659RGDNCBI36
Celera722,345,566 - 22,345,692RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,245,443 - 22,245,569UniSTS
CRA_TCAGchr7v2722,411,216 - 22,411,342UniSTS
RH123760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,174,915 - 22,175,264UniSTSGRCh37
Build 36722,141,440 - 22,141,789RGDNCBI36
Celera722,160,569 - 22,160,918RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,060,481 - 22,060,830UniSTS
CRA_TCAGchr7v2722,226,220 - 22,226,569UniSTS
TNG Radiation Hybrid Map710116.0UniSTS
G17170  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,257,028 - 22,257,197UniSTSGRCh37
Build 36722,223,553 - 22,223,722RGDNCBI36
Celera722,242,582 - 22,242,751RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,142,471 - 22,142,640UniSTS
CRA_TCAGchr7v2722,308,235 - 22,308,404UniSTS
SHGC-106887  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,181,544 - 22,181,815UniSTSGRCh37
Build 36722,148,069 - 22,148,340RGDNCBI36
Celera722,167,198 - 22,167,469RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,067,114 - 22,067,385UniSTS
CRA_TCAGchr7v2722,232,848 - 22,233,119UniSTS
TNG Radiation Hybrid Map710128.0UniSTS
SHGC-155317  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,184,007 - 22,184,323UniSTSGRCh37
Build 36722,150,532 - 22,150,848RGDNCBI36
Celera722,169,663 - 22,169,979RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,069,577 - 22,069,893UniSTS
CRA_TCAGchr7v2722,235,311 - 22,235,627UniSTS
TNG Radiation Hybrid Map710124.0UniSTS
SHGC-55982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,291,227 - 22,291,376UniSTSGRCh37
Build 36722,257,752 - 22,257,901RGDNCBI36
Celera722,276,778 - 22,276,927RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,176,664 - 22,176,813UniSTS
CRA_TCAGchr7v2722,342,434 - 22,342,583UniSTS
GeneMap99-GB4 RH Map794.46UniSTS
Whitehead-RH Map763.3UniSTS
NCBI RH Map7327.6UniSTS
SGC30845  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,157,939 - 22,158,045UniSTSGRCh37
Build 36722,124,464 - 22,124,570RGDNCBI36
Celera722,143,588 - 22,143,694RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,043,502 - 22,043,607UniSTS
CRA_TCAGchr7v2722,209,241 - 22,209,347UniSTS
GeneMap99-GB4 RH Map794.56UniSTS
Whitehead-RH Map763.3UniSTS
NCBI RH Map7337.9UniSTS
GDB:1318178  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,390,449 - 22,390,662UniSTSGRCh37
Build 36722,356,974 - 22,357,187RGDNCBI36
Celera722,376,007 - 22,376,220RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,275,884 - 22,276,097UniSTS
CRA_TCAGchr7v2722,441,658 - 22,441,871UniSTS
D7S1976  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,348,508 - 22,348,631UniSTSGRCh37
Build 36722,315,033 - 22,315,156RGDNCBI36
Celera722,334,060 - 22,334,183RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,233,936 - 22,234,059UniSTS
CRA_TCAGchr7v2722,399,716 - 22,399,839UniSTS
GDB:1317236  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,314,328 - 22,314,427UniSTSGRCh37
Build 36722,280,853 - 22,280,952RGDNCBI36
Celera722,299,876 - 22,299,975RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,199,751 - 22,199,850UniSTS
CRA_TCAGchr7v2722,365,533 - 22,365,632UniSTS
RH70247  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,219,960 - 22,220,135UniSTSGRCh37
Build 36722,186,485 - 22,186,660RGDNCBI36
Celera722,205,487 - 22,205,662RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,105,402 - 22,105,577UniSTS
CRA_TCAGchr7v2722,271,143 - 22,271,318UniSTS
GeneMap99-GB4 RH Map797.39UniSTS
RH46082  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,172,135 - 22,172,297UniSTSGRCh37
Build 36722,138,660 - 22,138,822RGDNCBI36
Celera722,157,785 - 22,157,947RGD
Celera76,772,631 - 6,772,793UniSTS
Cytogenetic Map7p15.3UniSTS
HuRef722,057,697 - 22,057,859UniSTS
CRA_TCAGchr7v2722,223,437 - 22,223,599UniSTS
GeneMap99-GB4 RH Map794.56UniSTS
SGC38371  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37722,172,135 - 22,172,390UniSTSGRCh37
Build 36722,138,660 - 22,138,915RGDNCBI36
Celera722,157,785 - 22,158,040RGD
Cytogenetic Map7p15.3UniSTS
HuRef722,057,697 - 22,057,952UniSTS
CRA_TCAGchr7v2722,223,437 - 22,223,692UniSTS
GeneMap99-GB4 RH Map794.56UniSTS
Whitehead-RH Map765.7UniSTS
NCBI RH Map7337.9UniSTS
D7S2510  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7p15.3UniSTS
Marshfield Genetic Map737.51UniSTS
Genethon Genetic Map736.7UniSTS
deCODE Assembly Map738.32UniSTS
Whitehead-YAC Contig Map7 UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2430 2788 2245 4951 1723 2336 3 621 1900 464 2267 7238 6411 43 3718 849 1732 1602 174 1


1 to 30 of 34 rows
RefSeq Transcripts NM_001367600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001367603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005249916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017012837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047421084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054359422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA732485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA815190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AA890636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC005079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW511225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF512545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP349215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN996625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF458410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 34 rows

Ensembl Acc Id: ENST00000344041   ⟹   ENSP00000343656
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,118,291 - 22,356,914 (-)Ensembl
Ensembl Acc Id: ENST00000401957   ⟹   ENSP00000384044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,118,238 - 22,193,909 (-)Ensembl
Ensembl Acc Id: ENST00000405243   ⟹   ENSP00000384870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,192,177 - 22,357,144 (-)Ensembl
Ensembl Acc Id: ENST00000420196   ⟹   ENSP00000395729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,167,070 - 22,220,238 (-)Ensembl
Ensembl Acc Id: ENST00000451559   ⟹   ENSP00000403956
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,157,864 - 22,193,744 (-)Ensembl
Ensembl Acc Id: ENST00000458533   ⟹   ENSP00000415664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,154,570 - 22,194,763 (-)Ensembl
Ensembl Acc Id: ENST00000468825
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,139,757 - 22,145,266 (-)Ensembl
Ensembl Acc Id: ENST00000471484
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,308,447 - 22,356,225 (-)Ensembl
Ensembl Acc Id: ENST00000475788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,191,439 - 22,291,241 (-)Ensembl
Ensembl Acc Id: ENST00000488366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,125,232 - 22,136,072 (-)Ensembl
Ensembl Acc Id: ENST00000497668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,356,310 - 22,356,910 (-)Ensembl
Ensembl Acc Id: ENST00000620335   ⟹   ENSP00000479340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,118,309 - 22,193,735 (-)Ensembl
Ensembl Acc Id: ENST00000665637   ⟹   ENSP00000499535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl722,118,236 - 22,357,154 (-)Ensembl
RefSeq Acc Id: NM_001367600   ⟹   NP_001354529
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,193,745 (-)NCBI
T2T-CHM13v2.0722,254,475 - 22,329,866 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001367601   ⟹   NP_001354530
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,134,818 - 22,193,745 (-)NCBI
T2T-CHM13v2.0722,271,058 - 22,329,866 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001367602   ⟹   NP_001354531
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,194,810 (-)NCBI
T2T-CHM13v2.0722,254,475 - 22,330,931 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001367603   ⟹   NP_001354532
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,155,958 - 22,193,745 (-)NCBI
T2T-CHM13v2.0722,292,193 - 22,329,866 (-)NCBI
Sequence:
RefSeq Acc Id: NM_012294   ⟹   NP_036426
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,357,154 (-)NCBI
GRCh37722,157,908 - 22,396,751 (-)NCBI
Build 36722,124,433 - 22,363,058 (-)NCBI Archive
Celera722,143,557 - 22,382,091 (-)RGD
HuRef722,043,471 - 22,243,092 (-)RGD
CHM1_1722,158,708 - 22,397,156 (-)NCBI
T2T-CHM13v2.0722,254,475 - 22,493,270 (-)NCBI
CRA_TCAGchr7v2722,209,210 - 22,447,742 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011515652   ⟹   XP_011513954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,219,147 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017012837   ⟹   XP_016868326
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,314,717 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047421083   ⟹   XP_047277039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,219,147 (-)NCBI
RefSeq Acc Id: XM_047421084   ⟹   XP_047277040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,118,236 - 22,219,147 (-)NCBI
RefSeq Acc Id: XM_054359421   ⟹   XP_054215396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0722,254,475 - 22,450,832 (-)NCBI
RefSeq Acc Id: XM_054359422   ⟹   XP_054215397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0722,254,475 - 22,355,980 (-)NCBI
1 to 5 of 19 rows
1 to 5 of 19 rows
RefSeq Acc Id: NP_036426   ⟸   NM_012294
- Peptide Label: isoform 1
- UniProtKB: A0A590UJR0 (UniProtKB/TrEMBL),   A8MQ07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011513954   ⟸   XM_011515652
- Peptide Label: isoform X2
- UniProtKB: B4DJ01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016868326   ⟸   XM_017012837
- Peptide Label: isoform X1
- UniProtKB: A8MQ07 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001354531   ⟸   NM_001367602
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001354529   ⟸   NM_001367600
- Peptide Label: isoform 2
- UniProtKB: Q92565 (UniProtKB/Swiss-Prot),   A4D140 (UniProtKB/Swiss-Prot),   Q8IXU5 (UniProtKB/Swiss-Prot),   A0A0S2Z561 (UniProtKB/TrEMBL),   B4DJ01 (UniProtKB/TrEMBL)
DEP   N-terminal Ras-GEF   Ras-GEF

Name Modeler Protein Id AA Range Protein Structure
AF-Q92565-F1-model_v2 AlphaFold Q92565 1-580 view protein structure

RGD ID:7210059
Promoter ID:EPDNEW_H10775
Type:initiation region
Name:RAPGEF5_2
Description:Rap guanine nucleotide exchange factor 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10776  EPDNEW_H10778  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,193,745 - 22,193,805EPDNEW
RGD ID:7210061
Promoter ID:EPDNEW_H10776
Type:initiation region
Name:RAPGEF5_1
Description:Rap guanine nucleotide exchange factor 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10775  EPDNEW_H10778  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38722,357,154 - 22,357,214EPDNEW
RGD ID:6806111
Promoter ID:HG_KWN:56512
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000326593
Position:
Human AssemblyChrPosition (strand)Source
Build 36722,362,344 - 22,362,844 (-)MPROMDB
RGD ID:6805542
Promoter ID:HG_KWN:56513
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:ENST00000344041,   ENST00000405243,   NM_012294,   OTTHUMT00000326592
Position:
Human AssemblyChrPosition (strand)Source
Build 36722,362,946 - 22,363,446 (-)MPROMDB


1 to 40 of 48 rows
Database
Acc Id
Source(s)
COSMIC RAPGEF5 COSMIC
Ensembl Genes ENSG00000136237 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000401957 ENTREZGENE
  ENST00000401957.6 UniProtKB/Swiss-Prot
  ENST00000665637 ENTREZGENE
Gene3D-CATH 1.10.840.10 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
  Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/Swiss-Prot
GTEx ENSG00000136237 GTEx
HGNC ID HGNC:16862 ENTREZGENE
Human Proteome Map RAPGEF5 Human Proteome Map
InterPro Ras-like_GEF UniProtKB/Swiss-Prot
  Ras-like_Gua-exchang_fac_N UniProtKB/Swiss-Prot
  Ras_G-nucl-exch_fac_CS UniProtKB/Swiss-Prot
  Ras_GEF_dom_sf UniProtKB/Swiss-Prot
  RASGEF_cat_dom UniProtKB/Swiss-Prot
  RASGEF_cat_dom_sf UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
KEGG Report hsa:9771 UniProtKB/Swiss-Prot
NCBI Gene 9771 ENTREZGENE
OMIM 609527 OMIM
PANTHER PTHR23113 UniProtKB/Swiss-Prot
  RAP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 UniProtKB/Swiss-Prot
Pfam RasGEF UniProtKB/Swiss-Prot
  RasGEF_N UniProtKB/Swiss-Prot
PharmGKB PA134902361 PharmGKB
PROSITE RASGEF UniProtKB/Swiss-Prot
  RASGEF_CAT UniProtKB/Swiss-Prot
  RASGEF_NTER UniProtKB/Swiss-Prot
SMART RasGEF UniProtKB/Swiss-Prot
  RasGEFN UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48366 UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
UniProt A0A0S2Z561 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z5S1_HUMAN UniProtKB/TrEMBL
  A0A590UJR0 ENTREZGENE, UniProtKB/TrEMBL
  A4D140 ENTREZGENE
  A8MQ07 ENTREZGENE, UniProtKB/TrEMBL
  B4DJ01 ENTREZGENE, UniProtKB/TrEMBL
  C9JBS6_HUMAN UniProtKB/TrEMBL
1 to 40 of 48 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 RAPGEF5  Rap guanine nucleotide exchange factor 5  RAPGEF5  Rap guanine nucleotide exchange factor (GEF) 5  Symbol and/or name change 5135510 APPROVED