Akap11 (A kinase anchor protein 11) - Rat Genome Database

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Gene: Akap11 (A kinase anchor protein 11) Mus musculus
Analyze
Symbol: Akap11
Name: A kinase anchor protein 11
RGD ID: 1332372
MGI Page MGI
Description: Enables protein kinase A regulatory subunit binding activity. Acts upstream of or within cortical actin cytoskeleton organization; protein localization to endosome; and renal water homeostasis. Predicted to be located in several cellular components, including cytosol; nucleolus; and peroxisome. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; eye; genitourinary system; immune system; and nervous system. Orthologous to human AKAP11 (A-kinase anchoring protein 11).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6330501D17Rik; A kinase (PRKA) anchor protein 11; A-kinase anchor protein 11; AKAP220; Gm80; mKIAA0629; PRKA11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391478,729,686 - 78,774,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1478,729,686 - 78,774,248 (-)EnsemblGRCm39 Ensembl
GRCm381478,492,246 - 78,536,980 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1478,492,246 - 78,536,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371478,892,053 - 78,936,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361477,226,401 - 77,253,274 (-)NCBIMGSCv36mm8
Celera1476,008,096 - 76,052,775 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1441.46NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A-kinase anchoring proteins: from protein complexes to physiology and disease. Carnegie GK, etal., IUBMB Life. 2009 Apr;61(4):394-406.
2. Alteration of AKAP220, an upstream component of the Rb pathway, in oral carcinogenesis. Garnis C, etal., Int J Cancer. 2005 Sep 20;116(5):813-9. doi: 10.1002/ijc.21065.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Aug 31;10(4):167-80.
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Localized effects of cAMP mediated by distinct routes of protein kinase A. Tasken K and Aandahl EM, Physiol Rev. 2004 Jan;84(1):137-67.
10. GABAC-receptor stimulation activates cAMP-dependent protein kinase via A-kinase anchoring protein 220. Yang L, etal., J Pharmacol Sci. 2008 Apr;106(4):578-84. Epub 2008 Apr 3.
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12520002   PMID:14610273   PMID:15033168   PMID:16141072   PMID:16141073   PMID:16602821   PMID:18799693  
PMID:21267068   PMID:21460214   PMID:21502359   PMID:21873635   PMID:24194600   PMID:27402760   PMID:27626380   PMID:27889896   PMID:28706196   PMID:30026308   PMID:34250905   PMID:36914641  
PMID:37171958   PMID:38355793  


Genomics

Comparative Map Data
Akap11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391478,729,686 - 78,774,306 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1478,729,686 - 78,774,248 (-)EnsemblGRCm39 Ensembl
GRCm381478,492,246 - 78,536,980 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1478,492,246 - 78,536,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371478,892,053 - 78,936,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361477,226,401 - 77,253,274 (-)NCBIMGSCv36mm8
Celera1476,008,096 - 76,052,775 (-)NCBICelera
Cytogenetic Map14D3NCBI
cM Map1441.46NCBI
AKAP11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381342,271,477 - 42,323,261 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1342,272,152 - 42,323,261 (+)EnsemblGRCh38hg38GRCh38
GRCh371342,846,288 - 42,897,397 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361341,744,289 - 41,795,402 (+)NCBINCBI36Build 36hg18NCBI36
Build 341341,744,288 - 41,782,992NCBI
Celera1323,903,720 - 23,954,839 (+)NCBICelera
Cytogenetic Map13q14.11NCBI
HuRef1323,649,570 - 23,700,689 (+)NCBIHuRef
CHM1_11342,813,753 - 42,864,863 (+)NCBICHM1_1
T2T-CHM13v2.01341,491,099 - 41,543,005 (+)NCBIT2T-CHM13v2.0
Akap11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81560,320,839 - 60,365,480 (-)NCBIGRCr8
mRatBN7.21553,911,635 - 53,956,138 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1553,911,657 - 53,941,605 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1558,044,930 - 58,089,415 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01559,163,315 - 59,207,800 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01555,988,186 - 56,032,676 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01560,722,138 - 60,766,673 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1560,722,160 - 60,766,579 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01564,390,111 - 64,434,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41559,649,461 - 59,679,551 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11559,667,851 - 59,686,848 (-)NCBI
Celera1553,502,729 - 53,532,469 (-)NCBICelera
Cytogenetic Map15q11NCBI
Akap11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555184,032,448 - 4,083,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555184,032,738 - 4,083,720 (-)NCBIChiLan1.0ChiLan1.0
AKAP11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21441,765,525 - 41,820,436 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11332,869,144 - 32,924,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01323,453,478 - 23,505,317 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
AKAP11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1228,462,058 - 8,509,660 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl228,465,797 - 8,509,955 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha228,454,180 - 8,502,984 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0228,684,334 - 8,733,152 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl228,687,219 - 8,732,517 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1228,378,640 - 8,427,434 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0228,429,251 - 8,478,037 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0228,440,950 - 8,489,748 (-)NCBIUU_Cfam_GSD_1.0
Akap11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945152,547,325 - 152,594,570 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367471,482,114 - 1,526,485 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367471,479,241 - 1,526,915 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKAP11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1124,704,881 - 24,752,244 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11124,702,157 - 24,752,410 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21125,404,617 - 25,429,539 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AKAP11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1320,447,394 - 20,498,604 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl320,462,176 - 20,494,670 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605723,710,925 - 23,762,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Akap11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474812,770,056 - 12,812,976 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474812,769,698 - 12,820,815 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Akap11
1623 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2388
Count of miRNA genes:685
Interacting mature miRNAs:848
Transcripts:ENSMUST00000022593, ENSMUST00000123853
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301844Pgia29_mproteoglycan induced arthritis 29 (mouse)Not determined1474352296108352384Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145608238190082509Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145654674590546941Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1458179640101859473Mouse
1300666Fembm2_mfemoral bone morphometry 2 (mouse)Not determined146239746096397680Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
11039527Ccc2_mcolitis susceptibility in the Collaborative Cross 2 (mouse)145991861294138217Mouse
1558823Tbbmd6_mtotal body bone mineral density 6 (mouse)Not determined1477073696111073787Mouse
10054475Ossc3_mosteosarcoma susceptibility 3 (mouse)Not determined1470863768104863926Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145393744087937440Mouse
1300551Lprm3_mlymphoproliferation modifier 3 (mouse)Not determined1471221224105221344Mouse
1558819Ossc2_mosteosarcoma susceptibility 2 (mouse)Not determined1474394976108395093Mouse
14928314Manh77_mmandible shape 77 (mouse)1476767790110767790Mouse
14747006Mancz12_mmandible centroid size 12 (mouse)1470071977104071977Mouse

Markers in Region
UniSTS:237230  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381478,495,543 - 78,495,680UniSTSGRCm38
MGSCv371478,895,350 - 78,895,487UniSTSGRCm37
Celera1476,011,421 - 76,011,558UniSTS
Cytogenetic Map14D3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000123853   ⟹   ENSMUSP00000116015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1478,729,686 - 78,774,248 (-)Ensembl
GRCm38.p6 Ensembl1478,492,246 - 78,536,808 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1478,733,314 - 78,747,564 (-)Ensembl
GRCm38.p6 Ensembl1478,495,874 - 78,510,124 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1478,733,188 - 78,747,432 (-)Ensembl
GRCm38.p6 Ensembl1478,495,748 - 78,509,992 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227808
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1478,732,265 - 78,741,411 (-)Ensembl
GRCm38.p6 Ensembl1478,494,825 - 78,503,971 (-)Ensembl
RefSeq Acc Id: NM_001164503   ⟹   NP_001157975
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391478,729,686 - 78,774,300 (-)NCBI
GRCm381478,492,246 - 78,536,860 (-)NCBI
MGSCv371478,892,053 - 78,936,667 (-)RGD
Celera1476,008,096 - 76,052,775 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001346784   ⟹   NP_001333713
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391478,729,686 - 78,760,142 (-)NCBI
GRCm381478,492,246 - 78,522,702 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247770   ⟹   XP_030103630
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391478,729,686 - 78,774,306 (-)NCBI
GRCm381478,492,964 - 78,536,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247771   ⟹   XP_030103631
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391478,730,404 - 78,774,306 (-)NCBI
GRCm381478,492,246 - 78,536,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036158570   ⟹   XP_036014463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391478,729,686 - 78,774,306 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001157975   ⟸   NM_001164503
- Peptide Label: isoform 1
- UniProtKB: E9Q777 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030103631   ⟸   XM_030247771
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001333713   ⟸   NM_001346784
- Peptide Label: isoform 2
- UniProtKB: E9Q777 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030103630   ⟸   XM_030247770
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000116015   ⟸   ENSMUST00000123853
RefSeq Acc Id: XP_036014463   ⟸   XM_036158570
- Peptide Label: isoform X3
Protein Domains
A-kinase anchor 110kDa C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q777-F1-model_v2 AlphaFold E9Q777 1-1894 view protein structure

Promoters
RGD ID:8683052
Promoter ID:EPDNEW_M19557
Type:initiation region
Name:Akap11_1
Description:Mus musculus A kinase anchor protein 11 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381478,536,843 - 78,536,903EPDNEW
RGD ID:6825174
Promoter ID:MM_KWN:17533
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC007USI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361478,892,421 - 78,892,921 (-)MPROMDB
RGD ID:6824680
Promoter ID:MM_KWN:17534
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung,   MEF_B6
Transcripts:AK129178_AKAP11,   UC007USJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361478,910,316 - 78,913,552 (-)MPROMDB
RGD ID:6824677
Promoter ID:MM_KWN:17535
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000095623,   NM_001164503,   OTTMUST00000081112
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361478,936,476 - 78,936,976 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2684060 AgrOrtholog
Ensembl Genes ENSMUSG00000022016 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000123853 ENTREZGENE
  ENSMUST00000123853.9 UniProtKB/TrEMBL
InterPro AKAP_110_C UniProtKB/TrEMBL
  SPHK1-interactor_AKAP_110 UniProtKB/TrEMBL
KEGG Report mmu:219181 UniProtKB/TrEMBL
MGD MGI:2684060 ENTREZGENE
NCBI Gene 219181 ENTREZGENE
PANTHER A-KINASE ANCHOR PROTEIN 11 UniProtKB/TrEMBL
  AKAP_110 UniProtKB/TrEMBL
Pfam AKAP_110 UniProtKB/TrEMBL
PhenoGen Akap11 PhenoGen
UniProt E9Q777 ENTREZGENE, UniProtKB/TrEMBL
  Q6ZQ80_MOUSE UniProtKB/TrEMBL
  Q8BSJ2_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Akap11  A kinase anchor protein 11  Akap11  A kinase (PRKA) anchor protein 11  Symbol and/or name change 5135510 APPROVED