Polr3c (polymerase (RNA) III (DNA directed) polypeptide C) - Rat Genome Database

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Gene: Polr3c (polymerase (RNA) III (DNA directed) polypeptide C) Mus musculus
Analyze
Symbol: Polr3c
Name: polymerase (RNA) III (DNA directed) polypeptide C
RGD ID: 1323061
MGI Page MGI
Description: Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of innate immune response and positive regulation of interferon-beta production. Predicted to be located in nucleoplasm. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3C (RNA polymerase III subunit C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933407E01Rik; DNA-directed RNA polymerase III subunit C; DNA-directed RNA polymerase III subunit RPC3; RNA polymerase III subunit C3; RP; RPC; RPC3; RPC62
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,618,836 - 96,634,803 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,618,806 - 96,634,944 (-)EnsemblGRCm39 Ensembl
GRCm38396,711,520 - 96,727,498 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,711,490 - 96,727,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37396,515,818 - 96,531,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,796,895 - 96,813,033 (-)NCBIMGSCv36mm8
Celera398,120,927 - 98,136,493 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:29768498   PMID:32325033  


Genomics

Comparative Map Data
Polr3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,618,836 - 96,634,803 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,618,806 - 96,634,944 (-)EnsemblGRCm39 Ensembl
GRCm38396,711,520 - 96,727,498 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,711,490 - 96,727,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37396,515,818 - 96,531,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,796,895 - 96,813,033 (-)NCBIMGSCv36mm8
Celera398,120,927 - 98,136,493 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.96NCBI
POLR3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,824,200 - 145,844,402 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,824,053 - 145,844,402 (+)EnsemblGRCh38hg38GRCh38
GRCh371145,590,666 - 145,610,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,303,962 - 144,322,241 (-)NCBINCBI36Build 36hg18NCBI36
Build 341143,081,648 - 143,099,928NCBI
Celera1119,795,949 - 119,814,224 (-)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,556,179 - 119,574,446 (-)NCBIHuRef
CHM1_11147,192,355 - 147,210,631 (+)NCBICHM1_1
T2T-CHM13v2.01144,941,003 - 144,961,205 (+)NCBIT2T-CHM13v2.0
Polr3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,935,038 - 186,950,962 (-)NCBIGRCr8
mRatBN7.22184,246,201 - 184,262,150 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,246,204 - 184,262,208 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,917,143 - 191,932,613 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,710,614 - 189,726,210 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,549,704 - 184,565,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,836,282 - 198,852,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,836,285 - 198,852,161 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,323,216 - 218,339,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,511,970 - 191,527,849 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,474,726 - 191,490,603 (-)NCBI
Celera2176,770,713 - 176,786,592 (-)NCBICelera
Cytogenetic Map2q34NCBI
Polr3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568243,073 - 261,418 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955568242,834 - 263,053 (-)NCBIChiLan1.0ChiLan1.0
POLR3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,215,715 - 103,234,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,804,442 - 102,822,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,917,371 - 121,935,976 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,733,846 - 113,752,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,733,846 - 113,752,486 (+)Ensemblpanpan1.1panPan2
POLR3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,634,299 - 58,646,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,636,244 - 58,645,838 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,102,454 - 58,114,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,631,014 - 59,642,722 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,633,068 - 59,642,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,503,834 - 58,515,493 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,564,812 - 58,576,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,291,372 - 59,303,029 (+)NCBIUU_Cfam_GSD_1.0
Polr3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,710,347 - 20,723,121 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867586,439 - 600,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867586,798 - 599,069 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,479,372 - 99,494,142 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,480,213 - 99,494,137 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,123,503 - 109,134,738 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,901,879 - 12,919,748 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,901,898 - 12,919,783 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,581,292 - 15,599,651 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,196,388 - 17,212,727 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,196,418 - 17,212,265 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:810
Count of miRNA genes:455
Interacting mature miRNAs:514
Transcripts:ENSMUST00000029741, ENSMUST00000125183, ENSMUST00000128918, ENSMUST00000137009, ENSMUST00000141377, ENSMUST00000154679
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
1301398Rapop3_mradiation-induced apoptosis 3 (mouse)Not determined390511217100464137Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse

Markers in Region
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_028925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_375595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_867239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC147485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC151028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000029741   ⟹   ENSMUSP00000029741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,618,806 - 96,634,944 (-)Ensembl
GRCm38.p6 Ensembl396,711,490 - 96,727,628 (-)Ensembl
Ensembl Acc Id: ENSMUST00000125183   ⟹   ENSMUSP00000123513
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,630,739 - 96,634,791 (-)Ensembl
GRCm38.p6 Ensembl396,723,423 - 96,727,475 (-)Ensembl
Ensembl Acc Id: ENSMUST00000128918   ⟹   ENSMUSP00000119236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,623,767 - 96,631,135 (-)Ensembl
GRCm38.p6 Ensembl396,716,451 - 96,723,819 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137009
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,626,039 - 96,634,792 (-)Ensembl
GRCm38.p6 Ensembl396,718,723 - 96,727,476 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141377   ⟹   ENSMUSP00000115300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,630,736 - 96,634,770 (-)Ensembl
GRCm38.p6 Ensembl396,723,420 - 96,727,454 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154679   ⟹   ENSMUSP00000122435
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl396,618,839 - 96,634,757 (-)Ensembl
GRCm38.p6 Ensembl396,711,523 - 96,727,441 (-)Ensembl
RefSeq Acc Id: NM_028925   ⟹   NP_083201
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,839 - 96,634,791 (-)NCBI
GRCm38396,711,895 - 96,727,439 (-)NCBI
MGSCv37396,515,818 - 96,531,362 (-)RGD
Celera398,120,927 - 98,136,493 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502187   ⟹   XP_006502250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,836 - 96,634,795 (-)NCBI
GRCm38396,711,520 - 96,727,498 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502188   ⟹   XP_006502251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,836 - 96,634,795 (-)NCBI
GRCm38396,711,520 - 96,727,498 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252855   ⟹   XP_030108715
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,836 - 96,634,795 (-)NCBI
GRCm38396,711,520 - 96,727,498 (-)NCBI
Sequence:
RefSeq Acc Id: XR_375595
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,836 - 96,634,803 (-)NCBI
GRCm38396,711,520 - 96,727,498 (-)NCBI
Sequence:
RefSeq Acc Id: XR_867239
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39396,618,836 - 96,634,803 (-)NCBI
GRCm38396,711,520 - 96,727,498 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083201   ⟸   NM_028925
- UniProtKB: Q8R0I2 (UniProtKB/Swiss-Prot),   Q9D483 (UniProtKB/Swiss-Prot),   B2RX77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502251   ⟸   XM_006502188
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006502250   ⟸   XM_006502187
- Peptide Label: isoform X1
- UniProtKB: Q8R0I2 (UniProtKB/Swiss-Prot),   Q9D483 (UniProtKB/Swiss-Prot),   B2RX77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108715   ⟸   XM_030252855
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000123513   ⟸   ENSMUST00000125183
Ensembl Acc Id: ENSMUSP00000029741   ⟸   ENSMUST00000029741
Ensembl Acc Id: ENSMUSP00000122435   ⟸   ENSMUST00000154679
Ensembl Acc Id: ENSMUSP00000119236   ⟸   ENSMUST00000128918
Ensembl Acc Id: ENSMUSP00000115300   ⟸   ENSMUST00000141377
Protein Domains
RNA polymerase III Rpc82 C -terminal   RNA polymerase III subunit RPC82-related helix-turn-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D483-F1-model_v2 AlphaFold Q9D483 1-533 view protein structure

Promoters
RGD ID:6833716
Promoter ID:MM_KWN:35416
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   Kidney
Transcripts:ENSMUST00000083735,   OTTMUST00000085234
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,527,456 - 96,527,956 (-)MPROMDB
RGD ID:6834264
Promoter ID:MM_KWN:35417
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   ES_Cell,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000085229,   OTTMUST00000085230,   OTTMUST00000085231,   OTTMUST00000085233,   UC008QOC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36396,531,301 - 96,532,272 (-)MPROMDB
RGD ID:6881712
Promoter ID:EPDNEW_M4307
Type:initiation region
Name:Polr3c_1
Description:Mus musculus polymerase III polypeptide C , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38396,727,473 - 96,727,533EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921664 AgrOrtholog
Ensembl Genes ENSMUSG00000028099 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000029741 ENTREZGENE
  ENSMUST00000029741.9 UniProtKB/Swiss-Prot
  ENSMUST00000125183.2 UniProtKB/TrEMBL
  ENSMUST00000128918.2 UniProtKB/TrEMBL
  ENSMUST00000141377.8 UniProtKB/Swiss-Prot
  ENSMUST00000154679 ENTREZGENE
  ENSMUST00000154679.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.1450 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNA_pol_III_RPC82-rel_HTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_III_Rpc82_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPC3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74414 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1921664 ENTREZGENE
NCBI Gene 74414 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12949 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HTH_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLR3C_WHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_Rpc82 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPC3_helical UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polr3c PhenoGen
UniProt B2RX77 ENTREZGENE, UniProtKB/TrEMBL
  D3YYS2_MOUSE UniProtKB/TrEMBL
  F6QK97_MOUSE UniProtKB/TrEMBL
  Q8R0I2 ENTREZGENE
  Q9D483 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8R0I2 UniProtKB/Swiss-Prot