POLR3C (RNA polymerase III subunit C) - Rat Genome Database

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Gene: POLR3C (RNA polymerase III subunit C) Pan paniscus
Analyze
Symbol: POLR3C
Name: RNA polymerase III subunit C
RGD ID: 11910165
Description: ENCODES a protein that exhibits DNA binding (inferred); single-stranded DNA binding (inferred); INVOLVED IN DNA-templated transcription (inferred); positive regulation of innate immune response (inferred); positive regulation of interferon-beta production (inferred); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH cataract 46 juvenile-onset (ortholog); gastrointestinal stromal tumor (ortholog); neutropenia (ortholog); FOUND IN DNA-directed RNA polymerase complex (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA-directed RNA polymerase III subunit RPC3; polymerase (RNA) III (DNA directed) polypeptide C (62kD)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,215,715 - 103,234,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,804,442 - 102,822,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,917,371 - 121,935,976 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,733,846 - 113,752,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,733,846 - 113,752,486 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
POLR3CBonobocataract 46 juvenile-onset  ISORGD:13230608554872ClinVar Annotator: match by term: Cataract 46 juvenile-onsetClinVarPMID:29464339|PMID:31690835
POLR3CBonobogastrointestinal stromal tumor  ISORGD:13230608554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
POLR3CBonoboneutropenia  ISORGD:13230608554872ClinVar Annotator: match by term: NeutropeniaClinVarPMID:25741868
POLR3CBonoboparathyroid carcinoma  ISORGD:13230608554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
POLR3CBonoboschizophrenia  ISORGD:13230608554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106|PMID:30208311
POLR3CBonobothrombocytopenia-absent radius syndrome  ISORGD:13230608554872ClinVar Annotator: match by term: Radial aplasia-thrombocytopenia syndromeClinVarPMID:17236129|PMID:22366785|PMID:22581968|PMID:24220582|PMID:26233629|PMID:27846804|PMID:28129423|PMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
POLR3CBonoboDNA-templated transcription involved_inIEAInterPro:IPR008806150520179 InterProGO_REF:0000002
POLR3CBonobopositive regulation of innate immune response involved_inIEAUniProtKB:Q9BUI4|ensembl:ENSP00000334564150520179 EnsemblGO_REF:0000107
POLR3CBonobopositive regulation of interferon-beta production involved_inIEAUniProtKB:Q9BUI4|ensembl:ENSP00000334564150520179 EnsemblGO_REF:0000107

Cellular Component
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
POLR3CBonoboDNA-directed RNA polymerase complex part_ofIEAUniProtKB-KW:KW-0240150520179 UniProtGO_REF:0000043
POLR3CBonoboDNA-directed RNA polymerase complex part_ofIEAUniRule:UR001419768150520179 UniProtGO_REF:0000104
POLR3CBonobonucleoplasm located_inIEAUniProtKB:Q9BUI4|ensembl:ENSP00000334564150520179 EnsemblGO_REF:0000107
POLR3CBonobonucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
POLR3CBonobonucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
POLR3CBonoboRNA polymerase III complex part_ofIEAPANTHER:PTN002658549150520179 TreeGrafterGO_REF:0000118
POLR3CBonoboRNA polymerase III complex part_ofIEAInterPro:IPR039748150520179 InterProGO_REF:0000002
POLR3CBonoboRNA polymerase III complex part_ofIEAUniProtKB:Q9BUI4|ensembl:ENSP00000334564150520179 EnsemblGO_REF:0000107
POLR3CBonoboRNA polymerase III complex part_ofIEAUniRule:UR001419768150520179 UniProtGO_REF:0000104
1 to 9 of 9 rows

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
POLR3CBonoboDNA binding enablesIEAInterPro:IPR008806150520179 InterProGO_REF:0000002
POLR3CBonoboprotein binding enablesISOUniProtKB:P52294|UniProtKB:Q9BT439068941 PMID:33961781IntActPMID:33961781
POLR3CBonoboprotein binding enablesISOUniProtKB:A1L306|UniProtKB:P14373|UniProtKB:Q13464|UniProtKB:Q96MT8|UniProtKB:Q96PV4|UniProtKB:Q9HAT09068941 PMID:25416956IntActPMID:25416956
POLR3CBonoboprotein binding enablesISOUniProtKB:Q9BT439068941 PMID:28514442IntActPMID:28514442
POLR3CBonoboprotein binding enablesISOUniProtKB:O15318|UniProtKB:Q9BT439068941 PMID:20154270IntActPMID:20154270
POLR3CBonoboprotein binding enablesISOUniProtKB:O00505|UniProtKB:O15131|UniProtKB:O15318|UniProtKB:O60684|UniProtKB:O95198|UniProtKB:O95678|UniProtKB:P14373|UniProtKB:P23497-2|UniProtKB:P26367|UniProtKB:P38432|UniProtKB:P52294|UniProtKB:P78424|UniProtKB:Q04323-2|UniProtKB:Q08379|UniProtKB:Q0VD86|UniProtKB:Q12933|UniProtKB:Q13554-3|UniProtKB:Q5SQQ9-2|UniProtKB:Q6ZU52|UniProtKB:Q86SG2|UniProtKB:Q8NC74|UniProtKB:Q96CS2|UniProtKB:Q96MT8-3|UniProtKB:Q9BT43|UniProtKB:Q9C0F1|UniProtKB:Q9H079|UniProtKB:Q9H0I2|UniProtKB:Q9H8Y1|UniProtKB:Q9NRD5|UniProtKB:Q9NRI5-2|UniProtKB:Q9NZQ3-3|UniProtKB:Q9Y2509068941 PMID:32296183IntActPMID:32296183
POLR3CBonoboprotein binding enablesISOUniProtKB:Q999599068941 PMID:11416169UniProtPMID:11416169
POLR3CBonoboprotein binding enablesISOUniProtKB:O15318|UniProtKB:Q9BT43|UniProtKB:Q9H1D99068941 PMID:21358628, PMID:35271311UniProtPMID:21358628|PMID:35271311
POLR3CBonobosingle-stranded DNA binding enablesIEAInterPro:IPR039748150520179 InterProGO_REF:0000002
POLR3CBonobosingle-stranded DNA binding enablesIEAUniRule:UR001419768150520179 UniProtGO_REF:0000104
POLR3CBonobosingle-stranded DNA binding enablesIEAUniProtKB:Q9BUI4|ensembl:ENSP00000334564150520179 EnsemblGO_REF:0000107
1 to 11 of 11 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
POLR3CBonoboRNA polymerase III transcription pathway   ISORGD:13230609068941 RGDPMID:12391170|PMID:20890107|REF_RGD_ID:9685217|REF_RGD_ID:9685218
PMID:22301074   PMID:30032202  



POLR3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,215,715 - 103,234,689 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,804,442 - 102,822,966 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,917,371 - 121,935,976 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,733,846 - 113,752,486 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,733,846 - 113,752,486 (+)Ensemblpanpan1.1panPan2
POLR3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,824,200 - 145,844,402 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,824,053 - 145,844,402 (+)EnsemblGRCh38hg38GRCh38
GRCh371145,590,666 - 145,610,913 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,303,962 - 144,322,241 (-)NCBINCBI36Build 36hg18NCBI36
Build 341143,081,648 - 143,099,928NCBI
Celera1119,795,949 - 119,814,224 (-)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,556,179 - 119,574,446 (-)NCBIHuRef
CHM1_11147,192,355 - 147,210,631 (+)NCBICHM1_1
T2T-CHM13v2.01144,941,003 - 144,961,205 (+)NCBIT2T-CHM13v2.0
Polr3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,618,836 - 96,634,803 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,618,806 - 96,634,944 (-)EnsemblGRCm39 Ensembl
GRCm38396,711,520 - 96,727,498 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,711,490 - 96,727,628 (-)EnsemblGRCm38mm10GRCm38
MGSCv37396,515,818 - 96,531,362 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,796,895 - 96,813,033 (-)NCBIMGSCv36mm8
Celera398,120,927 - 98,136,493 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.96NCBI
Polr3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,935,038 - 186,950,962 (-)NCBIGRCr8
mRatBN7.22184,246,201 - 184,262,150 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,246,204 - 184,262,208 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,917,143 - 191,932,613 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,710,614 - 189,726,210 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,549,704 - 184,565,173 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,836,282 - 198,852,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,836,285 - 198,852,161 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,323,216 - 218,339,302 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,511,970 - 191,527,849 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,474,726 - 191,490,603 (-)NCBI
Celera2176,770,713 - 176,786,592 (-)NCBICelera
Cytogenetic Map2q34NCBI
Polr3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568243,073 - 261,418 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955568242,834 - 263,053 (-)NCBIChiLan1.0ChiLan1.0
POLR3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,634,299 - 58,646,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,636,244 - 58,645,838 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,102,454 - 58,114,110 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,631,014 - 59,642,722 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,633,068 - 59,642,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,503,834 - 58,515,493 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,564,812 - 58,576,460 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,291,372 - 59,303,029 (+)NCBIUU_Cfam_GSD_1.0
Polr3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,710,347 - 20,723,121 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867586,439 - 600,694 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867586,798 - 599,069 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,479,372 - 99,494,142 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,480,213 - 99,494,137 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,123,503 - 109,134,738 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,901,879 - 12,919,748 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,901,898 - 12,919,783 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,581,292 - 15,599,651 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,196,388 - 17,212,727 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,196,418 - 17,212,265 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_003806199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034963859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000027908   ⟹   ENSPPAP00000006523
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1113,733,846 - 113,752,486 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000027922   ⟹   ENSPPAP00000006529
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1113,735,454 - 113,752,150 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000027925   ⟹   ENSPPAP00000006532
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1113,735,454 - 113,752,083 (+)Ensembl
RefSeq Acc Id: XM_003806199   ⟹   XP_003806247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21103,215,715 - 103,234,689 (+)NCBI
NHGRI_mPanPan11102,804,442 - 102,822,966 (+)NCBI
Mhudiblu_PPA_v01121,917,371 - 121,935,976 (-)NCBI
PanPan1.11113,733,846 - 113,752,486 (+)NCBI
Sequence:
Protein RefSeqs XP_003806247 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000006523.1
  ENSPPAP00000006529.1
  ENSPPAP00000006532.1
RefSeq Acc Id: XP_003806247   ⟸   XM_003806199
- UniProtKB: A0A2R8ZRI2 (UniProtKB/TrEMBL),   A0A2R8ZUH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000006523   ⟸   ENSPPAT00000027908
Ensembl Acc Id: ENSPPAP00000006532   ⟸   ENSPPAT00000027925
Ensembl Acc Id: ENSPPAP00000006529   ⟸   ENSPPAT00000027922


1 to 22 of 22 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000025184 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000027908.1 UniProtKB/TrEMBL
  ENSPPAT00000027922.1 UniProtKB/TrEMBL
  ENSPPAT00000027925.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
  6.10.140.1450 UniProtKB/TrEMBL
InterPro POLR3C_WHD UniProtKB/TrEMBL
  RNA_pol_III_RPC82-rel_HTH UniProtKB/TrEMBL
  RNA_pol_III_Rpc82_C UniProtKB/TrEMBL
  RPC3 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report pps:100968512 UniProtKB/TrEMBL
NCBI Gene POLR3C ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC3 UniProtKB/TrEMBL
  PTHR12949 UniProtKB/TrEMBL
Pfam HTH_9 UniProtKB/TrEMBL
  POLR3C_WHD UniProtKB/TrEMBL
  RNA_pol_Rpc82 UniProtKB/TrEMBL
  RPC3_helical UniProtKB/TrEMBL
UniProt A0A2R8ZPU8_PANPA UniProtKB/TrEMBL
  A0A2R8ZRI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZUH5 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows