Arid5a (AT-rich interaction domain 5A) - Rat Genome Database

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Gene: Arid5a (AT-rich interaction domain 5A) Mus musculus
Analyze
Symbol: Arid5a
Name: AT-rich interaction domain 5A
RGD ID: 1322288
MGI Page MGI
Description: Enables RNA stem-loop binding activity and chromatin binding activity. Involved in cellular response to lipopolysaccharide; positive regulation of T-helper 17 type immune response; and positive regulation of cytokine production. Acts upstream of or within chondrocyte differentiation; positive regulation of protein acetylation; and positive regulation of transcription by RNA polymerase II. Located in nucleus. Part of transcription regulator complex. Is expressed in several structures, including ear; heart; hemolymphoid system; nervous system; and neural retina. Orthologous to human ARID5A (AT-rich interaction domain 5A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ARID domain-containing protein 5A; AT rich interactive domain 5A (Mrf1 like); AT rich interactive domain 5A (MRF1-like); AT-rich interactive domain-containing protein 5A; D430024K22Rik; MGC36895; modulator recognition factor I; Mrf; Mrf1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,346,814 - 36,363,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,346,814 - 36,363,110 (+)EnsemblGRCm39 Ensembl
GRCm38136,307,733 - 36,324,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,307,733 - 36,324,029 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,364,578 - 36,380,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,252,300 - 36,267,521 (+)NCBIMGSCv36mm8
Celera136,094,498 - 36,110,796 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMousefundus dystrophy  ISORGD:13222878554872ClinVar Annotator: match by term: Retinal dystrophyClinVarPMID:25741868|PMID:27735924
Arid5aMouseintellectual disability  ISORGD:13222878554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Arid5aMouseschizophrenia  ISORGD:13222878554872ClinVar Annotator: match by term: SchizophreniaClinVarPMID:21681106|PMID:30208311

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMouse(+)-schisandrin B multiple interactionsISORGD:13110416480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ARID5A mRNA]CTDPMID:31150632
Arid5aMouse1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of ARID5A mRNACTDPMID:22206623
Arid5aMouse15-acetyldeoxynivalenol increases expressionISORGD:1322287648046415-acetyldeoxynivalenol results in increased expression of ARID5A mRNACTDPMID:23792671
Arid5aMouse17beta-estradiol multiple interactionsISORGD:13222876480464ARID5A protein inhibits the reaction [Estradiol results in increased activity of ESR1 protein]CTDPMID:15941852
Arid5aMouse17beta-estradiol increases expressionISORGD:13222876480464Estradiol results in increased expression of ARID5A mRNACTDPMID:31614463
Arid5aMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of ARID5A mRNACTDPMID:21570461|PMID:26377647
Arid5aMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13110416480464Tetrachlorodibenzodioxin results in increased expression of ARID5A mRNACTDPMID:33387578|PMID:34747641
Arid5aMouse3,3',5,5'-tetrabromobisphenol A increases expressionEXP 6480464tetrabromobisphenol A results in increased expression of ARID5A mRNACTDPMID:25172293
Arid5aMouse3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:13222876480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] more ...CTDPMID:28628672
Arid5aMouse4,4'-sulfonyldiphenol multiple interactionsISORGD:13222876480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] more ...CTDPMID:28628672
Arid5aMouse4-hydroxynon-2-enal decreases expressionEXP 64804644-hydroxy-2-nonenal results in decreased expression of ARID5A mRNACTDPMID:19191707
Arid5aMouse4-hydroxyphenyl retinamide increases expressionEXP 6480464Fenretinide results in increased expression of ARID5A mRNACTDPMID:28973697
Arid5aMouseacrolein multiple interactionsISORGD:13222876480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ...CTDPMID:32699268
Arid5aMouseacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of ARID5A mRNACTDPMID:30807115
Arid5aMouseafimoxifene multiple interactionsISORGD:13222876480464ARID5A protein inhibits the reaction [afimoxifene results in increased activity of ESR1 protein]CTDPMID:15941852
Arid5aMouseaflatoxin B1 decreases expressionISORGD:13222876480464Aflatoxin B1 results in decreased expression of ARID5A mRNACTDPMID:22100608
Arid5aMousealpha-pinene multiple interactionsISORGD:13222876480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in decreased expression of more ...CTDPMID:32699268
Arid5aMousealpha-Zearalanol multiple interactionsISORGD:13110416480464[Zeranol co-treated with perfluorooctanoic acid] results in increased expression of ARID5A mRNACTDPMID:35163327
Arid5aMouseamiodarone increases expressionISORGD:13222876480464Amiodarone results in increased expression of ARID5A mRNACTDPMID:19774075
Arid5aMousearistolochic acid A increases expressionISORGD:13222876480464aristolochic acid I results in increased expression of ARID5A mRNACTDPMID:33212167

1 to 20 of 92 rows

Biological Process
1 to 17 of 17 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMousecellular response to estrogen stimulus involved_inIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousecellular response to estrogen stimulus involved_inISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousecellular response to lipopolysaccharide involved_inIMP 2290270 PMID:27671645UniProtPMID:27671645
Arid5aMousechondrocyte differentiation acts_upstream_of_or_withinIDA 2290270 PMID:21346191MGIPMID:21346191
Arid5aMouseinnate immune response involved_inIEAUniProtKB-KW:KW-03992290270 UniProtGO_REF:0000043
Arid5aMousenegative regulation of transcription by RNA polymerase II involved_inISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenegative regulation of transcription by RNA polymerase II involved_inIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousepositive regulation of 3'-UTR-mediated mRNA stabilization involved_inISSUniProtKB:Q039892290270 UniProtGO_REF:0000024
Arid5aMousepositive regulation of interleukin-17 production involved_inIMP 2290270 PMID:27022145UniProtPMID:27022145
Arid5aMousepositive regulation of interleukin-6 production involved_inIMP 2290270 PMID:27671645UniProtPMID:27671645
Arid5aMousepositive regulation of protein acetylation acts_upstream_of_or_withinIDA 2290270 PMID:21346191MGIPMID:21346191
Arid5aMousepositive regulation of T-helper 1 cell cytokine production involved_inIMP 2290270 PMID:27671645UniProtPMID:27671645
Arid5aMousepositive regulation of T-helper 17 type immune response involved_inIMP 2290270 PMID:27022145UniProtPMID:27022145
Arid5aMousepositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIGIMGI:983712290270 PMID:21346191MGIPMID:21346191
Arid5aMousepositive regulation of tumor necrosis factor production involved_inIMP 2290270 PMID:27671645UniProtPMID:27671645
Arid5aMousepositive regulation of type II interferon production involved_inIMP 2290270 PMID:27022145, PMID:27671645UniProtPMID:27022145|PMID:27671645
Arid5aMouseregulation of transcription by RNA polymerase II involved_inIBAPANTHER:PTN000359478|CGD:CAL0000188874|FB:FBgn0085451|UniProtKB:Q14865|MGI:2444354|UniProtKB:Q03989|MGI:2443039|SGD:S000005937|PomBase:SPBC30B4.04c|MGI:21375122290270 GO_CentralGO_REF:0000033
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Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMousenucleolus located_inISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenucleolus located_inIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenucleoplasm located_inIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenucleoplasm located_inISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenucleus is_active_inIBAPANTHER:PTN000359478|CGD:CAL0000188874|UniProtKB:Q4LE39|PomBase:SPBC30B4.04c|FB:FBgn0085451|SGD:S000005937|UniProtKB:P29374|UniProtKB:Q03989|MGI:24430392290270 GO_CentralGO_REF:0000033
Arid5aMousenucleus located_inIDA 2290270 PMID:21346191MGIPMID:21346191
Arid5aMousetranscription regulator complex part_ofIPIPR:Q048872290270 PMID:21346191MGIPMID:21346191

Molecular Function
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMousechromatin binding enablesIDA 2290270 PMID:21346191MGIPMID:21346191
Arid5aMouseidentical protein binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMouseidentical protein binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousemRNA 3'-UTR AU-rich region binding enablesISSUniProtKB:Q039892290270 UniProtGO_REF:0000024
Arid5aMousenuclear androgen receptor binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenuclear androgen receptor binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenuclear estrogen receptor binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenuclear estrogen receptor binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenuclear retinoid X receptor binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenuclear retinoid X receptor binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousenuclear thyroid hormone receptor binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousenuclear thyroid hormone receptor binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMouseprotein binding enablesIPIUniProtKB:P484362290270 PMID:21346191IntActPMID:21346191
Arid5aMouseRNA stem-loop binding enablesIDA 2290270 PMID:27671645UniProtPMID:27671645
Arid5aMouseRNA stem-loop binding enablesIMP 2290270 PMID:27022145UniProtPMID:27022145
Arid5aMousesequence-specific DNA binding enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousesequence-specific DNA binding enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
Arid5aMousetranscription cis-regulatory region binding enablesIBAPANTHER:PTN000359478|UniProtKB:Q148652290270 GO_CentralGO_REF:0000033
Arid5aMousetranscription corepressor activity enablesISOUniProtKB:Q039892290270 GO_CentralGO_REF:0000119
Arid5aMousetranscription corepressor activity enablesIEAUniProtKB:Q03989|ensembl:ENSP000003500782290270 EnsemblGO_REF:0000107
1 to 20 of 20 rows

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Arid5aMousedecreased circulating interleukin-6 level  IAGP 5509061 MGIPMID:23676272
Arid5aMousedecreased circulating tumor necrosis factor level  IAGP 5509061 MGIPMID:23676272
Arid5aMousedecreased susceptibility to experimental autoimmune encephalomyelitis  IAGP 5509061 MGIPMID:23676272
Arid5aMousedecreased T-helper 17 cell number  IAGP 5509061 MGIPMID:23676272
Arid5aMouseincreased T cell number  IAGP 5509061 MGIPMID:23676272

#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15782199   PMID:15922553   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:21346191   PMID:21873635   PMID:23676272   PMID:27022145   PMID:27671645   PMID:28168301   PMID:28379390   PMID:29244194   PMID:29358370   PMID:30301788  
PMID:31289228   PMID:32325033   PMID:34389433   PMID:35315772   PMID:35940634   PMID:36454447   PMID:39106860  



Arid5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,346,814 - 36,363,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,346,814 - 36,363,110 (+)EnsemblGRCm39 Ensembl
GRCm38136,307,733 - 36,324,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,307,733 - 36,324,029 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,364,578 - 36,380,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,252,300 - 36,267,521 (+)NCBIMGSCv36mm8
Celera136,094,498 - 36,110,796 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.2NCBI
ARID5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,536,752 - 96,552,638 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,536,743 - 96,552,638 (+)EnsemblGRCh38hg38GRCh38
GRCh37297,202,489 - 97,218,375 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,566,191 - 96,582,098 (+)NCBINCBI36Build 36hg18NCBI36
Celera291,643,676 - 91,659,583 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef291,163,667 - 91,180,142 (+)NCBIHuRef
CHM1_1297,207,299 - 97,223,202 (+)NCBICHM1_1
T2T-CHM13v2.0297,043,371 - 97,059,257 (+)NCBIT2T-CHM13v2.0
Arid5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,030,513 - 46,058,729 (+)NCBIGRCr8
mRatBN7.2938,534,612 - 38,549,467 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,534,590 - 38,547,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,046,170 - 47,061,006 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,153,491 - 52,168,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,435,379 - 50,450,163 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0942,871,907 - 42,886,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,871,950 - 42,884,855 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,526,010 - 42,540,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,239,813 - 35,244,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,208,479 - 35,245,017 (+)NCBI
Celera936,310,858 - 36,315,497 (+)NCBICelera
Cytogenetic Map9q21NCBI
Arid5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,950,750 - 3,965,750 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,951,010 - 3,964,391 (+)NCBIChiLan1.0ChiLan1.0
ARID5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,755,836 - 31,771,847 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,758,599 - 31,774,604 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,762,076 - 102,778,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,459,684 - 97,475,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,459,690 - 97,475,651 (+)Ensemblpanpan1.1panPan2
ARID5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,320,791 - 34,333,660 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,321,177 - 34,333,621 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,091,654 - 34,104,579 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,091,079 - 35,104,010 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,091,084 - 35,104,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,215,957 - 34,228,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,278,026 - 34,290,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,496,157 - 34,509,082 (-)NCBIUU_Cfam_GSD_1.0
Arid5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,279,214 - 83,291,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744537,168 - 546,017 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744539,150 - 545,021 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,701,632 - 46,714,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,701,628 - 46,714,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2348,848,384 - 48,860,871 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARID5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114876,508 - 892,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14876,562 - 892,166 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,304,534 - 168,320,367 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,491,156 - 2,506,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Arid5a
755 total Variants

Predicted Target Of
Summary Value
Count of predictions:7245
Count of miRNA genes:916
Interacting mature miRNAs:1303
Transcripts:ENSMUST00000097778, ENSMUST00000115029, ENSMUST00000115031, ENSMUST00000115032, ENSMUST00000116629, ENSMUST00000124280, ENSMUST00000126413, ENSMUST00000137906, ENSMUST00000140218, ENSMUST00000141121, ENSMUST00000142319, ENSMUST00000145179, ENSMUST00000147123, ENSMUST00000150747
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 31 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
1357524W6q14_mweight 6 weeks QTL 14 (mouse)Not determined13476013873976915Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1357651Lgq5_mlate growth QTL 5 (mouse)Not determined13476013873976915Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
11100001Col4a1m1_mcollagen, type IV, alpha 1 modifier 1 (mouse)12555019162946882Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse

1 to 10 of 31 rows
Arid5a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1BUniSTS
cM Map115.2UniSTS






1 to 26 of 26 rows
RefSeq Transcripts NM_001172205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001172206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_033310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC132456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY196834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX209955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 26 of 26 rows

Ensembl Acc Id: ENSMUST00000097778   ⟹   ENSMUSP00000095385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,359,607 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,320,526 (+)Ensembl
Ensembl Acc Id: ENSMUST00000115029   ⟹   ENSMUSP00000110681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,850 - 36,362,069 (+)Ensembl
GRCm38.p6 Ensembl136,307,769 - 36,322,988 (+)Ensembl
Ensembl Acc Id: ENSMUST00000115031   ⟹   ENSMUSP00000110683
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,360,152 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,321,071 (+)Ensembl
Ensembl Acc Id: ENSMUST00000115032   ⟹   ENSMUSP00000110684
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,362,072 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,322,991 (+)Ensembl
Ensembl Acc Id: ENSMUST00000116629   ⟹   ENSMUSP00000136037
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,359,609 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,320,528 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124280
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,358,968 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,319,887 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126413   ⟹   ENSMUSP00000115490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,814 - 36,358,284 (+)Ensembl
GRCm38.p6 Ensembl136,307,733 - 36,319,203 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137906   ⟹   ENSMUSP00000117810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,363,110 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,324,029 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140218
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,860 - 36,355,659 (+)Ensembl
GRCm38.p6 Ensembl136,307,779 - 36,316,578 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,356,108 - 36,357,213 (+)Ensembl
GRCm38.p6 Ensembl136,317,027 - 36,318,132 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142319   ⟹   ENSMUSP00000119953
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,356,523 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,317,442 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145179
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,358,295 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,319,214 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,355,073 - 36,357,217 (+)Ensembl
GRCm38.p6 Ensembl136,315,992 - 36,318,136 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,835 - 36,357,369 (+)Ensembl
GRCm38.p6 Ensembl136,307,754 - 36,318,288 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl136,346,839 - 36,351,852 (+)Ensembl
GRCm38.p6 Ensembl136,307,758 - 36,312,771 (+)Ensembl
RefSeq Acc Id: NM_001172205   ⟹   NP_001165676
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
MGSCv37136,364,578 - 36,380,874 (+)RGD
Celera136,094,498 - 36,110,796 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001172206   ⟹   NP_001165677
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
MGSCv37136,364,578 - 36,380,874 (+)RGD
Celera136,094,498 - 36,110,796 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290726   ⟹   NP_001277655
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
Celera136,094,498 - 36,110,796 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290727   ⟹   NP_001277656
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
Celera136,094,498 - 36,110,796 (+)NCBI
Sequence:
RefSeq Acc Id: NM_145996   ⟹   NP_666108
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
MGSCv37136,364,578 - 36,380,874 (+)RGD
Celera136,094,498 - 36,110,796 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_033310
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,346,814 - 36,363,110 (+)NCBI
GRCm38136,307,733 - 36,324,029 (+)NCBI
MGSCv37136,364,578 - 36,380,874 (+)RGD
Celera136,094,498 - 36,110,796 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017319751   ⟹   XP_017175240
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39136,350,880 - 36,363,117 (+)NCBI
GRCm38136,307,872 - 36,324,037 (+)NCBI
Sequence:
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: NP_666108   ⟸   NM_145996
- Peptide Label: isoform 3
- UniProtKB: Q3U108 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165676   ⟸   NM_001172205
- Peptide Label: isoform 1
- UniProtKB: Q8BYB5 (UniProtKB/Swiss-Prot),   Q8BI45 (UniProtKB/Swiss-Prot),   Q3UDZ6 (UniProtKB/Swiss-Prot),   Q3UDA3 (UniProtKB/Swiss-Prot),   Q3U0S2 (UniProtKB/Swiss-Prot),   Q3U0F0 (UniProtKB/Swiss-Prot),   Q3TZS4 (UniProtKB/Swiss-Prot),   Q8R2W1 (UniProtKB/Swiss-Prot),   Q3U108 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001165677   ⟸   NM_001172206
- Peptide Label: isoform 2
- UniProtKB: Q3U108 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277655   ⟸   NM_001290726
- Peptide Label: isoform 5
- UniProtKB: D3Z0W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277656   ⟸   NM_001290727
- Peptide Label: isoform 6
- UniProtKB: Q3U108 (UniProtKB/Swiss-Prot)
- Sequence:
ARID

Name Modeler Protein Id AA Range Protein Structure
AF-Q3U108-F1-model_v2 AlphaFold Q3U108 1-590 view protein structure

RGD ID:6873424
Promoter ID:EPDNEW_M163
Type:multiple initiation site
Name:Arid5a_1
Description:Mus musculus AT rich interactive domain 5A (MRF1-like) , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M164  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,307,754 - 36,307,814EPDNEW
RGD ID:6873426
Promoter ID:EPDNEW_M164
Type:single initiation site
Name:Arid5a_2
Description:Mus musculus AT rich interactive domain 5A (MRF1-like) , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M163  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38136,308,002 - 36,308,062EPDNEW
RGD ID:6817371
Promoter ID:MM_KWN:421
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097779,   ENSMUST00000115029,   NM_001172205,   NM_001172206,   NM_145996,   NR_033310,   OTTMUST00000051019,   OTTMUST00000051021,   OTTMUST00000051022,   OTTMUST00000051023,   OTTMUST00000051025,   UC007APW.1,   UC007APY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36136,364,434 - 36,364,934 (+)MPROMDB
RGD ID:6817370
Promoter ID:MM_KWN:422
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:ENSMUST00000115030
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36136,368,131 - 36,368,977 (+)MPROMDB
RGD ID:6817376
Promoter ID:MM_KWN:423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Lung
Transcripts:OTTMUST00000051026
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36136,371,876 - 36,372,982 (+)MPROMDB
RGD ID:6817375
Promoter ID:MM_KWN:424
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000051027
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36136,372,931 - 36,373,431 (+)MPROMDB


1 to 40 of 47 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000037447 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000097778 ENTREZGENE
  ENSMUST00000115029 ENTREZGENE
  ENSMUST00000115029.2 UniProtKB/Swiss-Prot
  ENSMUST00000115031 ENTREZGENE
  ENSMUST00000115031.8 UniProtKB/Swiss-Prot
  ENSMUST00000115032 ENTREZGENE
  ENSMUST00000115032.8 UniProtKB/Swiss-Prot
  ENSMUST00000137906 ENTREZGENE
  ENSMUST00000137906.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.150.60 UniProtKB/Swiss-Prot
InterPro ARID/SWI1_ChromRemod UniProtKB/Swiss-Prot
  ARID_dom UniProtKB/Swiss-Prot
  ARID_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:214855 UniProtKB/Swiss-Prot
MGD MGI:2443039 ENTREZGENE
NCBI Gene 214855 ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5A UniProtKB/Swiss-Prot
  RBP-RELATED UniProtKB/Swiss-Prot
Pfam ARID UniProtKB/Swiss-Prot
PhenoGen Arid5a PhenoGen
PROSITE ARID UniProtKB/Swiss-Prot
SMART ARID UniProtKB/Swiss-Prot
  BRIGHT UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46774 UniProtKB/Swiss-Prot
UniProt ARI5A_MOUSE UniProtKB/Swiss-Prot
  D3Z085_MOUSE UniProtKB/TrEMBL
  D3Z0W0 ENTREZGENE, UniProtKB/TrEMBL
  D3Z7U1_MOUSE UniProtKB/TrEMBL
  J3KMU9_MOUSE UniProtKB/TrEMBL
  Q3TZS4 ENTREZGENE
  Q3U0F0 ENTREZGENE
  Q3U0S2 ENTREZGENE
  Q3U108 ENTREZGENE
  Q3UDA3 ENTREZGENE
  Q3UDZ6 ENTREZGENE
  Q8BI45 ENTREZGENE
  Q8BYB5 ENTREZGENE
  Q8R2W1 ENTREZGENE
UniProt Secondary Q3TZS4 UniProtKB/Swiss-Prot
1 to 40 of 47 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Arid5a  AT-rich interaction domain 5A  Arid5a  AT rich interactive domain 5A (MRF1-like)  Symbol and/or name change 5135510 APPROVED