Arid5a (AT-rich interaction domain 5A) - Rat Genome Database

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Gene: Arid5a (AT-rich interaction domain 5A) Heterocephalus glaber
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Symbol: Arid5a
Name: AT-rich interaction domain 5A
RGD ID: 18914439
Description: ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); mRNA 3'-UTR AU-rich region binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); cellular response to lipopolysaccharide (ortholog); chondrocyte differentiation (ortholog); ASSOCIATED WITH intellectual disability (ortholog); schizophrenia (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 5A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,491,156 - 2,506,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Arid5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247492,491,156 - 2,506,110 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARID5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38296,536,752 - 96,552,638 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl296,536,743 - 96,552,638 (+)EnsemblGRCh38hg38GRCh38
GRCh37297,202,489 - 97,218,375 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36296,566,191 - 96,582,098 (+)NCBINCBI36Build 36hg18NCBI36
Celera291,643,676 - 91,659,583 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef291,163,667 - 91,180,142 (+)NCBIHuRef
CHM1_1297,207,299 - 97,223,202 (+)NCBICHM1_1
T2T-CHM13v2.0297,043,371 - 97,059,257 (+)NCBIT2T-CHM13v2.0
Arid5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39136,346,814 - 36,363,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl136,346,814 - 36,363,110 (+)EnsemblGRCm39 Ensembl
GRCm38136,307,733 - 36,324,037 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl136,307,733 - 36,324,029 (+)EnsemblGRCm38mm10GRCm38
MGSCv37136,364,578 - 36,380,874 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36136,252,300 - 36,267,521 (+)NCBIMGSCv36mm8
Celera136,094,498 - 36,110,796 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.2NCBI
Arid5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,030,513 - 46,058,729 (+)NCBIGRCr8
mRatBN7.2938,534,612 - 38,549,467 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl938,534,590 - 38,547,597 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx947,046,170 - 47,061,006 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0952,153,491 - 52,168,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0950,435,379 - 50,450,163 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0942,871,907 - 42,886,725 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl942,871,950 - 42,884,855 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0942,526,010 - 42,540,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4935,239,813 - 35,244,452 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1935,208,479 - 35,245,017 (+)NCBI
Celera936,310,858 - 36,315,497 (+)NCBICelera
Cytogenetic Map9q21NCBI
Arid5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554703,950,750 - 3,965,750 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554703,951,010 - 3,964,391 (+)NCBIChiLan1.0ChiLan1.0
ARID5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21231,755,836 - 31,771,847 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A31,758,599 - 31,774,604 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A102,762,076 - 102,778,072 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A97,459,684 - 97,475,655 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A97,459,690 - 97,475,651 (+)Ensemblpanpan1.1panPan2
ARID5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,320,791 - 34,333,660 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1734,321,177 - 34,333,621 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1734,091,654 - 34,104,579 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01735,091,079 - 35,104,010 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1735,091,084 - 35,104,106 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11734,215,957 - 34,228,876 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,278,026 - 34,290,944 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,496,157 - 34,509,082 (-)NCBIUU_Cfam_GSD_1.0
Arid5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629283,279,214 - 83,291,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936744537,168 - 546,017 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936744539,150 - 545,021 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl346,701,632 - 46,714,113 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1346,701,628 - 46,714,121 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2348,848,384 - 48,860,871 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARID5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114876,508 - 892,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14876,562 - 892,166 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041168,304,534 - 168,320,367 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010226   ⟹   ENSHGLP00000010112
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247492,491,156 - 2,506,110 (+)Ensembl
RefSeq Acc Id: XM_004844364   ⟹   XP_004844421
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBI
RefSeq Acc Id: XM_013072203   ⟹   XP_012927657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBI
RefSeq Acc Id: XM_021258015   ⟹   XP_021113674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBI
RefSeq Acc Id: XM_021258016   ⟹   XP_021113675
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247492,491,162 - 2,504,580 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004844421 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927657 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113674 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113675 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010112
RefSeq Acc Id: XP_004844421   ⟸   XM_004844364
- Peptide Label: isoform X1
- UniProtKB: G5BMV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021113675   ⟸   XM_021258016
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021113674   ⟸   XM_021258015
- Peptide Label: isoform X2
- UniProtKB: G5BMV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927657   ⟸   XM_013072203
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000010112   ⟸   ENSHGLT00000010226


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007255 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010226 ENTREZGENE
Gene3D-CATH ARID DNA-binding domain UniProtKB/TrEMBL
InterPro ARID/SWI1_ChromRemod UniProtKB/TrEMBL
  ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
NCBI Gene Arid5a ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5A UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
Superfamily-SCOP ARID-like UniProtKB/TrEMBL
UniProt G5BMV4 ENTREZGENE, UniProtKB/TrEMBL