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Gene: Ushbp1 (USH1 protein network component harmonin binding protein 1) Mus musculus

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Symbol:

Ushbp1

Name:

USH1 protein network component harmonin binding protein 1

RGD ID:

1322005

MGI Page

MGI

Description:

Predicted to enable PDZ domain binding activity. Is expressed in embryo; heart; liver; and lung. Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2210404N08Rik; 9430064H24; AIE-75 binding protein; AIEBP; harmonin-binding protein USHBP1; MCC2; USH1C-binding protein 1; Usher syndrome 1C binding protein 1; Usher syndrome type-1C protein-binding protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,836,918 - 71,848,480 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,836,916 - 71,848,446 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,384,274 - 71,395,834 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,384,272 - 71,395,802 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,908,173 - 73,919,700 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,314,358 - 74,324,774 (-)	NCBI		MGSCv36	mm8
Celera	8	73,908,945 - 73,920,510 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ushbp1	Mouse	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	ISO	RGD:1310859	6480464	Tetrachlorodibenzodioxin results in decreased expression of USHBP1 mRNA	CTD	PMID:32109520\|PMID:34747641
Ushbp1	Mouse	4,4'-sulfonyldiphenol	affects methylation	EXP		6480464	bisphenol S affects the methylation of USHBP1 gene	CTD	PMID:31683443
Ushbp1	Mouse	5-azacytidine	decreases expression	ISO	RGD:1322004	6480464	Azacitidine results in decreased expression of USHBP1 mRNA	CTD	PMID:20823114
Ushbp1	Mouse	8-Br-cAMP	increases expression	ISO	RGD:1322004	6480464	8-Bromo Cyclic Adenosine Monophosphate results in increased expression of USHBP1 mRNA	CTD	PMID:22079614
Ushbp1	Mouse	Aflatoxin B2 alpha	increases methylation	ISO	RGD:1322004	6480464	aflatoxin B2 results in increased methylation of USHBP1 promoter	CTD	PMID:30157460
Ushbp1	Mouse	amosite asbestos	decreases expression	EXP		6480464	Asbestos, Amosite results in decreased expression of USHBP1 mRNA	CTD	PMID:23917077
Ushbp1	Mouse	arsane	decreases methylation	ISO	RGD:1322004	6480464	Arsenic results in decreased methylation of USHBP1 promoter	CTD	PMID:31135185
Ushbp1	Mouse	arsenic atom	decreases methylation	ISO	RGD:1322004	6480464	Arsenic results in decreased methylation of USHBP1 promoter	CTD	PMID:31135185
Ushbp1	Mouse	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of USHBP1 mRNA	CTD	PMID:21964900
Ushbp1	Mouse	benzo[b]fluoranthene	increases expression	EXP		6480464	benzo(b)fluoranthene results in increased expression of USHBP1 mRNA	CTD	PMID:26377693
Ushbp1	Mouse	bisphenol A	decreases expression	ISO	RGD:1310859	6480464	bisphenol A results in decreased expression of USHBP1 mRNA	CTD	PMID:25181051
Ushbp1	Mouse	bisphenol A	increases expression	ISO	RGD:1310859	6480464	bisphenol A results in increased expression of USHBP1 mRNA	CTD	PMID:30816183\|PMID:32528016
Ushbp1	Mouse	bisphenol F	decreases expression	EXP		6480464	bisphenol F results in decreased expression of USHBP1 mRNA	CTD	PMID:38685157
Ushbp1	Mouse	cadmium atom	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of USHBP1 more ...	CTD	PMID:37325564
Ushbp1	Mouse	cadmium dichloride	decreases expression	ISO	RGD:1310859	6480464	Cadmium Chloride results in decreased expression of USHBP1 mRNA	CTD	PMID:33453195
Ushbp1	Mouse	cadmium dichloride	multiple interactions	EXP		6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of USHBP1 more ...	CTD	PMID:37325564
Ushbp1	Mouse	cadmium dichloride	decreases expression	ISO	RGD:1322004	6480464	Cadmium Chloride results in decreased expression of USHBP1 mRNA	CTD	PMID:38382870
Ushbp1	Mouse	carbamazepine	affects expression	ISO	RGD:1322004	6480464	Carbamazepine affects the expression of USHBP1 mRNA	CTD	PMID:25979313
Ushbp1	Mouse	carbon nanotube	decreases expression	EXP		6480464	Nanotubes, Carbon analog results in decreased expression of USHBP1 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25554681\|PMID:25620056
Ushbp1	Mouse	chlorpyrifos	increases expression	EXP		6480464	Chlorpyrifos results in increased expression of USHBP1 mRNA	CTD	PMID:37019170
Ushbp1	Mouse	dioxygen	decreases expression	EXP		6480464	Oxygen deficiency results in decreased expression of USHBP1 mRNA	CTD	PMID:24205000
Ushbp1	Mouse	dioxygen	multiple interactions	EXP		6480464	[NFE2L2 protein affects the susceptibility to Oxygen] which affects the expression of USHBP1 mRNA	CTD	PMID:30529165
Ushbp1	Mouse	menadione	increases expression	EXP		6480464	Vitamin K 3 results in increased expression of USHBP1 mRNA	CTD	PMID:25270620
Ushbp1	Mouse	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased more ...	CTD	PMID:34911549
Ushbp1	Mouse	paracetamol	affects expression	EXP		6480464	Acetaminophen affects the expression of USHBP1 mRNA	CTD	PMID:17562736
Ushbp1	Mouse	paracetamol	increases expression	ISO	RGD:1310859	6480464	Acetaminophen results in increased expression of USHBP1 mRNA	CTD	PMID:33387578
Ushbp1	Mouse	potassium dichromate	increases expression	EXP		6480464	Potassium Dichromate results in increased expression of USHBP1 mRNA	CTD	PMID:23608068
Ushbp1	Mouse	tetraphene	decreases expression	EXP		6480464	benz(a)anthracene results in decreased expression of USHBP1 mRNA	CTD	PMID:26377693
Ushbp1	Mouse	trimellitic anhydride	decreases expression	EXP		6480464	trimellitic anhydride results in decreased expression of USHBP1 mRNA	CTD	PMID:19042947
Ushbp1	Mouse	triptonide	increases expression	EXP		6480464	triptonide results in increased expression of USHBP1 mRNA	CTD	PMID:33045310
Ushbp1	Mouse	valproic acid	increases methylation	ISO	RGD:1322004	6480464	Valproic Acid results in increased methylation of USHBP1 gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ushbp1	Mouse	biological_process	involved_in	ND		2290270		MGI	GO_REF:0000015

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ushbp1	Mouse	cellular_component	is_active_in	ND		2290270		MGI	GO_REF:0000015

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ushbp1	Mouse	PDZ domain binding	enables	ISO	UniProtKB:Q8N6Y0	2290270		GO_Central	GO_REF:0000119
Ushbp1	Mouse	PDZ domain binding	enables	ISO	RefSeq:NM_031941	2290270		MGI	GO_REF:0000008
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:O14777\|UniProtKB:O14964\|UniProtKB:O15155\|UniProtKB:Q8IYI6\|UniProtKB:Q8TAB5\|UniProtKB:Q8WWB3\|UniProtKB:Q96GM5\|UniProtKB:Q9BT78\|UniProtKB:Q9BVI4\|UniProtKB:Q9UJW9	9068941	PMID:16189514	IntAct	PMID:16189514
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:A0A0C4DG38\|UniProtKB:B1APZ0\|UniProtKB:O15481\|UniProtKB:O60573\|UniProtKB:O60826\|UniProtKB:O60941\|UniProtKB:O75558\|UniProtKB:O76015\|UniProtKB:O95990-3\|UniProtKB:P00540\|UniProtKB:P02792\|UniProtKB:P07992\|UniProtKB:P33993\|UniProtKB:P35900\|UniProtKB:P40222\|UniProtKB:P48047\|UniProtKB:P52292\|UniProtKB:P53365\|UniProtKB:P54646\|UniProtKB:P57105\|UniProtKB:Q00994\|UniProtKB:Q0D2H9\|UniProtKB:Q14738\|UniProtKB:Q15323\|UniProtKB:Q15435\|UniProtKB:Q2KHM9\|UniProtKB:Q2WGJ6\|UniProtKB:Q548N1\|UniProtKB:Q5T124\|UniProtKB:Q5VTR2\|UniProtKB:Q5XKE5\|UniProtKB:Q68DK2-5\|UniProtKB:Q6A162\|UniProtKB:Q6IBW4-4\|UniProtKB:Q6IPU0\|UniProtKB:Q6P088\|UniProtKB:Q6P1K2\|UniProtKB:Q6P9E2\|UniProtKB:Q6YHU6\|UniProtKB:Q6ZUS5\|UniProtKB:Q76N32\|UniProtKB:Q7L2R6\|UniProtKB:Q8IY31\|UniProtKB:Q8IYE0-2\|UniProtKB:Q8IYR0\|UniProtKB:Q8IYX3\|UniProtKB:Q8N3L3\|UniProtKB:Q8N4L8\|UniProtKB:Q8N9J2\|UniProtKB:Q8NE01-3\|UniProtKB:Q8NEA9\|UniProtKB:Q8NFR7\|UniProtKB:Q8TAB5\|UniProtKB:Q8TD31-3\|UniProtKB:Q8TES7-6\|UniProtKB:Q8WWB3\|UniProtKB:Q8WXI9\|UniProtKB:Q969G3\|UniProtKB:Q96B02\|UniProtKB:Q96BZ8\|UniProtKB:Q96CS2\|UniProtKB:Q96EZ8\|UniProtKB:Q96FI0\|UniProtKB:Q96FQ7\|UniProtKB:Q96FV9\|UniProtKB:Q96HB5-4\|UniProtKB:Q96HW7\|UniProtKB:Q96IX9\|UniProtKB:Q99627\|UniProtKB:Q99816\|UniProtKB:Q99996-2\|UniProtKB:Q9BQ89\|UniProtKB:Q9BT78\|UniProtKB:Q9BYV2\|UniProtKB:Q9H5Z6\|UniProtKB:Q9H788-2\|UniProtKB:Q9HBI0\|UniProtKB:Q9NPJ6\|UniProtKB:Q9NSA3\|UniProtKB:Q9NSK0\|UniProtKB:Q9NV31\|UniProtKB:Q9NVE4\|UniProtKB:Q9NX04\|UniProtKB:Q9P2B4\|UniProtKB:Q9UDX3\|UniProtKB:Q9UJF2\|UniProtKB:Q9UK41\|UniProtKB:Q9Y3D9\|UniProtKB:Q9Y4H4	9068941	PMID:25416956	IntAct	PMID:25416956
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:Q9UJW9	9068941	PMID:19060904	IntAct	PMID:19060904
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:A0A1B0GWI1\|UniProtKB:A5D8V7\|UniProtKB:A6NEM1\|UniProtKB:A6NJ78-4\|UniProtKB:A8MW99\|UniProtKB:B2RXF5\|UniProtKB:G4XUV3\|UniProtKB:O14777\|UniProtKB:O15481\|UniProtKB:O43482\|UniProtKB:O43521\|UniProtKB:O60941-5\|UniProtKB:O75604\|UniProtKB:O75934\|UniProtKB:O75935-2\|UniProtKB:O76014\|UniProtKB:O76015\|UniProtKB:O94868-3\|UniProtKB:O95678\|UniProtKB:O95995\|UniProtKB:P00540\|UniProtKB:P02533\|UniProtKB:P08779\|UniProtKB:P09683\|UniProtKB:P15173\|UniProtKB:P21673\|UniProtKB:P26367\|UniProtKB:P30626\|UniProtKB:P37198\|UniProtKB:P38936\|UniProtKB:P40222\|UniProtKB:P47897\|UniProtKB:P55040\|UniProtKB:P55201-2\|UniProtKB:P57105\|UniProtKB:P59942\|UniProtKB:P78537\|UniProtKB:P85299-2\|UniProtKB:Q00994\|UniProtKB:Q05D60\|UniProtKB:Q0VAL7\|UniProtKB:Q12934-2\|UniProtKB:Q13064\|UniProtKB:Q13352\|UniProtKB:Q13515\|UniProtKB:Q13561\|UniProtKB:Q14005-2\|UniProtKB:Q14D33\|UniProtKB:Q15172\|UniProtKB:Q15911-2\|UniProtKB:Q16512\|UniProtKB:Q16543\|UniProtKB:Q2WGJ6\|UniProtKB:Q3SY84\|UniProtKB:Q5JUK2\|UniProtKB:Q5JXC2\|UniProtKB:Q5T124-6\|UniProtKB:Q5VWN6\|UniProtKB:Q5W5X9-3\|UniProtKB:Q63ZY3\|UniProtKB:Q68DK2-5\|UniProtKB:Q6AI39\|UniProtKB:Q6IPU0\|UniProtKB:Q6NUQ1\|UniProtKB:Q6P597-3\|UniProtKB:Q6PIY2\|UniProtKB:Q6PJG6\|UniProtKB:Q6ZRS2-3\|UniProtKB:Q6ZVT0-3\|UniProtKB:Q76N32-2\|UniProtKB:Q7L5N1\|UniProtKB:Q7Z3H0-1\|UniProtKB:Q7Z3Y7\|UniProtKB:Q7Z3Y8\|UniProtKB:Q7Z3Y9\|UniProtKB:Q7Z6G3-2\|UniProtKB:Q7Z6N9\|UniProtKB:Q86UD0\|UniProtKB:Q8IVT4\|UniProtKB:Q8IW40\|UniProtKB:Q8IYE0\|UniProtKB:Q8IYI6\|UniProtKB:Q8IYX3\|UniProtKB:Q8N3L3\|UniProtKB:Q8N443\|UniProtKB:Q8N4L8\|UniProtKB:Q8N5M4\|UniProtKB:Q8N720\|UniProtKB:Q8N7C3\|UniProtKB:Q8N7U7-2\|UniProtKB:Q8N8B7-2\|UniProtKB:Q8NA61-2\|UniProtKB:Q8NCU1\|UniProtKB:Q8NE01\|UniProtKB:Q8NEH6\|UniProtKB:Q8NFV4-4\|UniProtKB:Q8TAB5	9068941	PMID:32296183	IntAct	PMID:32296183
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:A0A0S2Z3R2\|UniProtKB:A0A0S2Z5X4\|UniProtKB:A0A0S2Z6P0\|UniProtKB:I6L9F6\|UniProtKB:O14964\|UniProtKB:P50539-4\|UniProtKB:Q9BT78\|UniProtKB:Q9UK41	9068941	PMID:26871637	IntAct	PMID:26871637
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:Q8TAU3\|UniProtKB:Q8TD31-3\|UniProtKB:Q8TDX5-2\|UniProtKB:Q8WWB3\|UniProtKB:Q8WXK1\|UniProtKB:Q92529\|UniProtKB:Q969H6\|UniProtKB:Q969V4\|UniProtKB:Q96C12\|UniProtKB:Q96EZ8\|UniProtKB:Q96GM5\|UniProtKB:Q96GS4\|UniProtKB:Q96KN3\|UniProtKB:Q96M95-2\|UniProtKB:Q96MT8-3\|UniProtKB:Q96MY7\|UniProtKB:Q96RD9\|UniProtKB:Q99459\|UniProtKB:Q9BQ89\|UniProtKB:Q9BT25\|UniProtKB:Q9BT92\|UniProtKB:Q9BWG6\|UniProtKB:Q9BXY8\|UniProtKB:Q9BYU1\|UniProtKB:Q9BYV2\|UniProtKB:Q9BZL4\|UniProtKB:Q9C0C4\|UniProtKB:Q9H0I2\|UniProtKB:Q9H2G9\|UniProtKB:Q9HBI0\|UniProtKB:Q9NP66\|UniProtKB:Q9NP98\|UniProtKB:Q9NPJ6\|UniProtKB:Q9NRD5\|UniProtKB:Q9NV31\|UniProtKB:Q9NYB9-2\|UniProtKB:Q9NZD8\|UniProtKB:Q9P086\|UniProtKB:Q9P0W2\|UniProtKB:Q9P2K3-2\|UniProtKB:Q9UDX3\|UniProtKB:Q9UI47-2\|UniProtKB:Q9UIA0\|UniProtKB:Q9UJW9\|UniProtKB:Q9UPT5-1\|UniProtKB:Q9Y5L4	9068941	PMID:32296183	IntAct	PMID:32296183
Ushbp1	Mouse	protein binding	enables	ISO	UniProtKB:Q13515	9068941	PMID:25910212	IntAct	PMID:25910212

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ushbp1	Mouse	vertebral fusion		IEA		5509061		MGI

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:18799693	PMID:21267068
PMID:21677750	PMID:22016184	PMID:30635555	PMID:30973865	PMID:38355793

Ushbp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	71,836,918 - 71,848,480 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	71,836,916 - 71,848,446 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	71,384,274 - 71,395,834 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	71,384,272 - 71,395,802 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	73,908,173 - 73,919,700 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	74,314,358 - 74,324,774 (-)	NCBI		MGSCv36	mm8
Celera	8	73,908,945 - 73,920,510 (-)	NCBI		Celera
Cytogenetic Map	8	B3.3	NCBI
cM Map	8	34.43	NCBI

USHBP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	17,249,171 - 17,264,745 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	17,249,171 - 17,282,786 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	17,359,980 - 17,375,554 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	17,221,849 - 17,236,544 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	17,221,848 - 17,236,544	NCBI
Celera	19	17,262,392 - 17,277,301 (-)	NCBI		Celera
Cytogenetic Map	19	p13.11	NCBI
HuRef	19	16,927,891 - 16,942,605 (-)	NCBI		HuRef
CHM1_1	19	17,360,331 - 17,375,018 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	17,384,049 - 17,399,626 (-)	NCBI		T2T-CHM13v2.0

Ushbp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	18,091,311 - 18,101,927 (-)	NCBI		GRCr8
mRatBN7.2	16	18,057,321 - 18,067,933 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	18,057,326 - 18,067,877 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	16	18,108,949 - 18,119,545 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	19,241,512 - 19,252,096 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	18,161,870 - 18,172,466 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	19,781,276 - 19,791,832 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	19,781,279 - 19,791,832 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	19,641,397 - 19,651,953 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	18,546,489 - 18,557,045 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	16	18,546,486 - 18,555,536 (-)	NCBI
Celera	16	18,262,900 - 18,273,456 (-)	NCBI		Celera
Cytogenetic Map	16	p14	NCBI

Ushbp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955524	946,561 - 957,029 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955524	945,044 - 954,424 (+)	NCBI	ChiLan1.0	ChiLan1.0

USHBP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	22,119,365 - 22,135,998 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	21,125,938 - 21,142,572 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	16,737,813 - 16,752,891 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	17,711,987 - 17,726,576 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	17,711,987 - 17,726,524 (-)	Ensembl	panpan1.1		panPan2

USHBP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	45,477,070 - 45,486,552 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	45,477,592 - 45,486,510 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	45,390,394 - 45,399,904 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	45,963,233 - 45,972,744 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	45,962,145 - 45,972,731 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	45,199,878 - 45,209,379 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	45,609,695 - 45,619,255 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	45,885,552 - 45,895,064 (+)	NCBI		UU_Cfam_GSD_1.0

Ushbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	204,035,715 - 204,044,346 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	3,584,879 - 3,593,496 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	3,584,890 - 3,593,481 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

USHBP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	60,411,629 - 60,422,554 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	60,411,629 - 60,422,577 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

USHBP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	15,758,962 - 15,772,737 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	15,758,777 - 15,772,471 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666074	3,669,606 - 3,683,305 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ushbp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624908	662,451 - 670,191 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624908	661,663 - 670,226 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ushbp1
830 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	556
Count of miRNA genes:	345
Interacting mature miRNAs:	393
Transcripts:	ENSMUST00000049184
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36630154	93455280	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	48090064	82090180	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	49245591	83245673	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58928107	92928107	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50505958	84505958	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	48090064	82090180	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54740461	88740637	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	48190168	82190288	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	55159258	89159407	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50505958	84505958	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	59136404	93136404	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	56298872	90298872	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68722479	83326976	Mouse
11039503	Ccc4_m	colitis susceptibility in the Collaborative Cross 4 (mouse)					8	65174237	78002730	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	61513479	95513605	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	40162297	95416226	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71589427	90929226	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	52334843	86334843	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301544	Iba3_m	induction of brown adipocytes 3 (mouse)			Not determined		8	44747914	78748059	Mouse

D10Mit157.2

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	6	D1	UniSTS
Cytogenetic Map	16	B4	UniSTS
Cytogenetic Map	18	E2	UniSTS
Cytogenetic Map	4	C3	UniSTS
Cytogenetic Map	7	B2	UniSTS
Cytogenetic Map	4	D2.3	UniSTS
Cytogenetic Map	11	E1	UniSTS
Cytogenetic Map	14	E2.2	UniSTS
Cytogenetic Map	4	C7	UniSTS
Cytogenetic Map	2	H4	UniSTS
Cytogenetic Map	1	F	UniSTS
Cytogenetic Map	6	C3	UniSTS
Cytogenetic Map	11	D	UniSTS
Cytogenetic Map	3	G2	UniSTS
Cytogenetic Map	17	A1	UniSTS
Cytogenetic Map	9	F2	UniSTS
Cytogenetic Map	12	F1	UniSTS
Cytogenetic Map	19	C2	UniSTS
Cytogenetic Map	3	B	UniSTS
Cytogenetic Map	8	C1	UniSTS
Cytogenetic Map	18	A2	UniSTS
Cytogenetic Map	3	F2	UniSTS
Cytogenetic Map	14	C3	UniSTS
Cytogenetic Map	8	E1	UniSTS
Cytogenetic Map	8	E2	UniSTS
Cytogenetic Map	5	B1	UniSTS
Cytogenetic Map	18	B1	UniSTS
Cytogenetic Map	9	C	UniSTS
Cytogenetic Map	14	C2	UniSTS
Cytogenetic Map	6	A1	UniSTS
Cytogenetic Map	10	B4	UniSTS
Cytogenetic Map	13	D2.1	UniSTS
Cytogenetic Map	5	E5	UniSTS
Cytogenetic Map	11	B1.3	UniSTS
Cytogenetic Map	4	D1	UniSTS
Cytogenetic Map	9	A5.2	UniSTS
Cytogenetic Map	3	F1	UniSTS
Cytogenetic Map	17	E3	UniSTS
Cytogenetic Map	11	B3	UniSTS
Cytogenetic Map	1	H4	UniSTS
Cytogenetic Map	6	A3	UniSTS
Cytogenetic Map	5	E4-E5	UniSTS
Cytogenetic Map	15	E1	UniSTS
Cytogenetic Map	13	D	UniSTS
Cytogenetic Map	14	B	UniSTS
Cytogenetic Map	14	D1	UniSTS
Cytogenetic Map	7	B4	UniSTS
Cytogenetic Map	8	D3	UniSTS
Cytogenetic Map	X	D	UniSTS
Cytogenetic Map	17	A3.3	UniSTS
Cytogenetic Map	7	E2	UniSTS
Cytogenetic Map	1	H2.3	UniSTS
Cytogenetic Map	7	A2	UniSTS
Cytogenetic Map	7	F3	UniSTS
Cytogenetic Map	9	F1	UniSTS
Cytogenetic Map	10	C1	UniSTS
Cytogenetic Map	4	E2	UniSTS
Cytogenetic Map	16	A1	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Cytogenetic Map	8	D2	UniSTS
Cytogenetic Map	3	D	UniSTS
Cytogenetic Map	15	D2	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	7	A3	UniSTS
Cytogenetic Map	15	F1	UniSTS
Cytogenetic Map	16	B2	UniSTS
Cytogenetic Map	7	C	UniSTS
Cytogenetic Map	3	F2.1	UniSTS
Cytogenetic Map	6	F3	UniSTS
Cytogenetic Map	1	C4	UniSTS
Cytogenetic Map	11	E2	UniSTS
Cytogenetic Map	11	B5	UniSTS
Cytogenetic Map	9	F3	UniSTS
Cytogenetic Map	2	B	UniSTS
Cytogenetic Map	13	B3	UniSTS
Cytogenetic Map	9	A4	UniSTS
Cytogenetic Map	5	A3	UniSTS
Cytogenetic Map	2	H1	UniSTS
Cytogenetic Map	16	B1	UniSTS
Cytogenetic Map	1	A5	UniSTS
Cytogenetic Map	11	C	UniSTS
Cytogenetic Map	9	E1	UniSTS
Cytogenetic Map	6	G1	UniSTS
Cytogenetic Map	X	A2	UniSTS
Cytogenetic Map	13	B1	UniSTS
Cytogenetic Map	5	E2	UniSTS
Cytogenetic Map	12	C1	UniSTS
Cytogenetic Map	5	F	UniSTS
Cytogenetic Map	4	D3	UniSTS
Cytogenetic Map	10	C2	UniSTS
Cytogenetic Map	9	B	UniSTS
Cytogenetic Map	5	G2	UniSTS
Cytogenetic Map	7	F1	UniSTS
Cytogenetic Map	12	C3	UniSTS
Cytogenetic Map	10	A4	UniSTS
Cytogenetic Map	8	A2	UniSTS
Cytogenetic Map	18	A1	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Cytogenetic Map	1	C2	UniSTS
Cytogenetic Map	11	B2	UniSTS
Cytogenetic Map	6	E3	UniSTS
Cytogenetic Map	5	C3.3	UniSTS
Cytogenetic Map	1	B	UniSTS
Cytogenetic Map	17	A3.1	UniSTS
Cytogenetic Map	7	A1	UniSTS
Cytogenetic Map	2	E5	UniSTS
Cytogenetic Map	11	A1	UniSTS
Cytogenetic Map	4	B1	UniSTS
Cytogenetic Map	15	A2	UniSTS
Cytogenetic Map	8	C3	UniSTS
Cytogenetic Map	2	A3	UniSTS
Cytogenetic Map	5	G3	UniSTS
Cytogenetic Map	4	A3	UniSTS
Cytogenetic Map	2	H3	UniSTS
Cytogenetic Map	8	A1	UniSTS
Cytogenetic Map	8	A1.1	UniSTS
Cytogenetic Map	16	A3	UniSTS
Cytogenetic Map	10	B1	UniSTS
Cytogenetic Map	19	A	UniSTS
Cytogenetic Map	10	A1	UniSTS
Cytogenetic Map	13	D1	UniSTS
Cytogenetic Map	4	A1	UniSTS
Cytogenetic Map	9	A3	UniSTS
Cytogenetic Map	17	C	UniSTS
Cytogenetic Map	1	D	UniSTS
Cytogenetic Map	5	E3	UniSTS
Cytogenetic Map	15	D3	UniSTS
Cytogenetic Map	2	H2	UniSTS
Cytogenetic Map	7	D3	UniSTS
Cytogenetic Map	2	A1	UniSTS
Cytogenetic Map	14	C1	UniSTS
Cytogenetic Map	14	E5	UniSTS
Cytogenetic Map	10	C	UniSTS
Cytogenetic Map	18	B2	UniSTS
Cytogenetic Map	2	F1	UniSTS
Cytogenetic Map	10	D3	UniSTS
Cytogenetic Map	17	A2	UniSTS
Cytogenetic Map	2	C3	UniSTS
Cytogenetic Map	1	C3	UniSTS
Cytogenetic Map	17	B2	UniSTS
Cytogenetic Map	5	B2	UniSTS
Cytogenetic Map	5	G1	UniSTS
Cytogenetic Map	4	C6	UniSTS
Cytogenetic Map	13	C3	UniSTS
Cytogenetic Map	2	E1	UniSTS
Cytogenetic Map	17	A3.2-A3.3	UniSTS
Cytogenetic Map	19	C3	UniSTS
Cytogenetic Map	7	E3	UniSTS
Cytogenetic Map	13	C1	UniSTS
Cytogenetic Map	9	E3.1	UniSTS
Cytogenetic Map	15	E3	UniSTS
Cytogenetic Map	6	B1	UniSTS
Cytogenetic Map	X	E3	UniSTS
Cytogenetic Map	4	C4	UniSTS
Cytogenetic Map	3	E3	UniSTS
Cytogenetic Map	11	A4	UniSTS
Cytogenetic Map	4	C5	UniSTS
Cytogenetic Map	18	B3	UniSTS
Cytogenetic Map	9	A2	UniSTS
Cytogenetic Map	7	E1	UniSTS
Cytogenetic Map	5	D-E1	UniSTS
Cytogenetic Map	5	B3	UniSTS
Cytogenetic Map	13	A2-A3	UniSTS
Cytogenetic Map	5	A2	UniSTS
Cytogenetic Map	4	B3	UniSTS
Cytogenetic Map	1	E4	UniSTS
Cytogenetic Map	17	E4	UniSTS
Cytogenetic Map	1	G2	UniSTS
Cytogenetic Map	15	B3.1	UniSTS
Cytogenetic Map	12	E	UniSTS
Cytogenetic Map	X	A5	UniSTS
Cytogenetic Map	6	A3.3	UniSTS
Cytogenetic Map	6	G3	UniSTS
Cytogenetic Map	6	F2	UniSTS
Cytogenetic Map	5	C1	UniSTS
Cytogenetic Map	4	D2.1	UniSTS
Cytogenetic Map	4	A5	UniSTS
Cytogenetic Map	3	F2.2	UniSTS
Cytogenetic Map	1	E3-E4	UniSTS
Cytogenetic Map	9	F1-F3	UniSTS
Cytogenetic Map	1	C1.1	UniSTS
Cytogenetic Map	14	D2	UniSTS
Cytogenetic Map	12	A2	UniSTS
Cytogenetic Map	17	A3-B	UniSTS
Cytogenetic Map	7	F5	UniSTS
Cytogenetic Map	14	A3	UniSTS
Cytogenetic Map	5	G1.1	UniSTS
Cytogenetic Map	X	F2-F4	UniSTS
Cytogenetic Map	7	D2	UniSTS
Cytogenetic Map	2	F3	UniSTS
Cytogenetic Map	10	A3	UniSTS
Cytogenetic Map	X	A7.3	UniSTS
Cytogenetic Map	9	F1-F2	UniSTS
Cytogenetic Map	13	A3.2	UniSTS
Cytogenetic Map	10	A2	UniSTS
Cytogenetic Map	1	C1	UniSTS
Cytogenetic Map	1	A1	UniSTS
Cytogenetic Map	12	D3	UniSTS
Cytogenetic Map	1	A3-A5	UniSTS
Cytogenetic Map	2	A2	UniSTS
Cytogenetic Map	3	A1	UniSTS
Cytogenetic Map	X	A3.3	UniSTS
Cytogenetic Map	16	A-B1	UniSTS
Cytogenetic Map	1	D2.3	UniSTS
Cytogenetic Map	6	B2.3	UniSTS
Cytogenetic Map	2	G3	UniSTS
Cytogenetic Map	X	A2-A3.1	UniSTS
Cytogenetic Map	9	A5.3	UniSTS
Cytogenetic Map	14	A2-B	UniSTS
Cytogenetic Map	8	E1-E2	UniSTS
Cytogenetic Map	8	A3	UniSTS
Cytogenetic Map	1	G3-H1	UniSTS
Cytogenetic Map	8	B3-C1	UniSTS
Cytogenetic Map	19	C1	UniSTS
Cytogenetic Map	8	C5	UniSTS
Cytogenetic Map	8	A4	UniSTS
Cytogenetic Map	15	F3	UniSTS
Cytogenetic Map	14	E4	UniSTS
Cytogenetic Map	4	D2.2	UniSTS
Cytogenetic Map	X	F5	UniSTS
cM Map	10	40.0	UniSTS
Whitehead Genetic	10	33.9	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_181418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509656	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006509657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003947258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK008831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK034939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK043798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084049	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC026453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY241807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000049184 ⟹ ENSMUSP00000045668

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,838,013 - 71,848,429 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,385,369 - 71,395,785 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000212496

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,839,877 - 71,841,978 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,387,233 - 71,389,334 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000212516

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,839,694 - 71,842,930 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,387,050 - 71,390,286 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000212626 ⟹ ENSMUSP00000148319

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,836,916 - 71,848,434 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,384,272 - 71,395,790 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000213000

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	71,840,429 - 71,848,446 (-)	Ensembl
GRCm38.p6 Ensembl	8	71,387,785 - 71,395,802 (-)	Ensembl

RefSeq Acc Id:

NM_181418 ⟹ NP_852083

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,836,918 - 71,848,445 (-)	NCBI
GRCm38	8	71,384,274 - 71,395,801 (-)	NCBI
MGSCv37	8	73,908,173 - 73,919,700 (-)	RGD
Celera	8	73,908,945 - 73,920,510 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

GAATGGCTTGAGATATGCCCTGGATCTCAGGCCTTTCCCAAGGTGCTCTGGAGAAGCAGAGAAGAGCGCAGCAGGGTCAACCCCCAGGGAAACAAAAAAACAAAAAACAAGGATTCTAAGGTGACGAA
GGCAAGAACTGAAAGCAGACTGTAGTGACAGAGGCAATGAGTGCCCGGGCCACACGGCCCCGAAGCCGTCGAGGGAGGCATCCTCTGCCTGGGGAGCTAGACCCTGTAGCTGAGAGCTCAGAGGAAGT
AGATGCCAACAATGGACGCTTCGAGACTAAACCTGAGCTGCATCAGGAATACCTTGGTCCTGGCCTTCAGAGCCCAAGGAACTGGATCAAGGAGGGTTGTGATGTGGGATCCCATGCGGTTCTATCCT
TGAGCCCAGAAGAACAGTGCGAGCCTGAGGTGGAAGCCCACCAGGTCCTGCAAGAAGCCCCCCTGGATAGTGGCCCTGCTGAGATATCAGTACCCAGTGTGTATGAGACCTTGCAGTGCAGGCTGAGC
TCCCTTGAGGCAGTTGTAGCTGCCTTGCGCCACCACTCGCTAAGCTTTCCAAAGTCAGTGGAAGCAGAAGACAGAGACCAGGGGGCTCCGGGGCCCTTTGGTGATGAGAAAGAAGACGCAGGACCTGG
ACAGCAGGAGGCTGCTCGCCTCATAGAGAGGAACGCCTGGCTGCGGCTAGCCCTGTGCAACCGGGAGGATGAGCTGGCATGCACTCAGGCTTCACTGCAGGACGCCCAGGCAGAGAAGGAGACTCTGC
AGAGACAGGTACAGGAGCTGGAGGATTCCCTGATGCAGATGGAGGCCTCCCCACCTACCCCCATCCTCAGAGCAGGGCGTAGAAACAGCAACTCCAGTACTTCTGGGGCAGAAAGGAGACCCTGGGTA
CCTCAGGACTCTTCCATGGCTCACCCCTTTCTCCAACGCCTCCGGAGTGACTCCAGCACCCAGAGCTTTGGGTGCCTTTCCACACAGCATCCAGCCCCAGAGACGTACCTCATGGAAGACCAGATGGG
GCAGCTCCAGGGGAGCATTGAGAAGTTGAAGTGCTTCAACCGTCTTCTTCTGGCTGTGCTCCAGGGCTACAAGGGCCGTTGTGAGAGCCTCAGCATTAAGCTGGCCAAGCGGGAAGCCGAGGCCACAG
CCCTGCGCCTGGCTCTGCAGTATAGTGAGGACTGTGAGGAGGTGTATGAGGTGCTGCTAGCTCTGAAGATGGCTGGCCTAGGAACTGGAGTTGGAACTACCAAGGGTGACCTGCAGGCTGCTGAGAAG
GAGGCCTCTAGGCTGCTGATGAAGAAGGAAGCAACCATGGAGGTAGAGACACCCCAGCCCAGCTCAGAGGGCAGTGGTGTGGACAAGCCTACACCAGAGGAACTGGCCTCTCAGCTCCATGGCTATGT
CCAGCATCTCCGGGAACGCTGGGCTCTGGTGAAGATCCCCGAAGAACTTGGCCCTGTCACTGCACCCAAGGCCACTATGCCCCATGCAGAAGCAACAGTGCAGGCCATTCTGGAGATACAACCTGGCC
CCACCTTGCCCCATCTGGAGAAGTCTCAGATCCAGCAGGACCTAGCAGCTACTCGGGACAGGCTGGCTGATCTGGTGCTGAGGCTGCAGCTAACACAACGAGAGAAGCGTGGGTTGGAGCTGCGGGAG
GCTGCACTGCGGGCCCAGGGCCCTGCCCACCAGCTACTCCTGCAGCAGCTTCGCTGGGAGCGGGCTCACTTTGCGGGTGATGGCAGCAGTGGAGGCAGTAGCGAGGACCCAAGCAGCGAGGAGGAGGC
TGGGGAGGACAGACAGCAGCACTACCAGGGCCCTCTTGCCCTCCTGGATGGTCAGATGGGCAAAGTGTGGGACTCTGAGAATGTGTCCCAGGAACTGTCAGCGTCCTTGGCCCGGGCAATAGACCTGC
GGGCACAGCTGCAGTCCCTGCGGCAGCAGCTGGAACAGGTGACTCAGAAGGGCCGAACCAGACGTGTTCAGAGTGCCGAGCTGTCCAGAGAACTGTGCAAGGCTCACAGTGCTCTGGCCTTGGCCTTC
AGAGGAGCCCACCGGAAGCAGGAAGAGCAACGCCTGAAGTTGGAGCAGCAGGTGGCTCGGTTGCAGGCTCAGCAGGCAGAAGAGCTGGCAGTGCTGACAGCCACCGCTAGGGCCCTGGGGAAGCCTGG
GGCACCCCAGCCAGCCCAGACTTTCCTGTAGGGCCCGGACCACGTTTGCTTGTGACACAGAGGTGGCTGGAGTGTCACAGTGTCCTGTGGTGGGCGGAGAGGTGGTCCAACAACTAAGAGCAGGGTCT
CCAATTGCGGGCACTTGAGTTTAATTGCCAGCCTCAGCAGCCATGGCGCCTGTGACTCCGGGTCAAGGAGATCTGGCACCCCCTTCTGGCCTCTGCAGGCTCTGTACTAATGTTCCCTCACACATGTA
ATTAGACAAAGTAACTTACAAACCTGTCCTTTGTCCCTGGCACCTGGAGCGTCTCTTCAAGAGGGGACTGAGGTGGGACGGGCTTAGCTTAAGGGTGTGGCAGGGAGGCTTGTTCCCAGGGAGAGGAA
CCCCAGGCTGCTTTAGAACCAGCATTTACAGGAAGTAGAGGGCTGGTGGTTGCTCAGCAGTAGGGCACCTGCTGAGATTGTTTGAAGCCCTCAGAGCTGTCTCTGTGTGCTCCCAACAGCCTGCACTA
AGGAGGCCTGCATTGGTCCCAGCCCTTATAGAACATGTGGGAGTCTTCTGCAGAATACATGGAGTGGGGTGGGGGGAAACAAAGGCCTTGGTGGGTGGAGTATAGGCCTAGCACGCACAGGGCCCTGA
GTTCCAAACCCAGTGACATATACACCTGGAAGTCTGTGGCTGCCTGTGATGCCAGCACTCAGAGCCTAAGGCTATCCCTGACTACACAGTGTGTTTAAGGCCAGCCTGGACTTCTTGAGACAGTATCA
GAGAAAGAAGTTAATGAGGGGCTGGAGACAAGGCTCAGTGGTTAGGAGCACTGGCTCTCTTGCAGAGGGCCTGGGATCCATTTCCAGCACCCAACGTGGCAGCTCACAACTGTCTGTAACTCCAGTTC
CAGGGGTCCAGTACCCTTTTCTGGCTTCTGTGGACATCAGGTAGACACATTACATGGACACAAATGCAGACAAAACACACCTAAATATAAAAACAAAATGAATGAATGAGAAAAGTGTAACCAGAGAG
ATGGCTGACTGGGCAAGGGTGCTTATTGCGGAGTGACAATTTGAGGTCTGCATTCAATTCCCAGCTCCCACATAAAGGTGGAATGAGGATGGACGCCACAAAGTTGTCCTCTGACATCCACAATATCA
CCCGTTGTTACTGTTGTTAAATTGAGAGTCAGAGGAGATACCTCAGCAGTTAAGAGCACTTACTGCTCTAGAGGAGGACCAGAGTCCAGTTCCCAGCACCCATAGTAGCTCACAGCCACCTGTAATTC
CAGCTCTAGGGGATCTGATGCTTCTGGCCGCCTAGGACGCCCACACACAGATACACATGATTGAAAATGGTAAGAATAAAACTTAATGTACTG

hide sequence

RefSeq Acc Id:

XM_006509656 ⟹ XP_006509719

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,838,017 - 71,848,479 (-)	NCBI
GRCm38	8	71,385,365 - 71,395,833 (-)	NCBI

Sequence:

show sequence

TTTTGGCTATCGCAGCCTCAGTAGCCAGTGGCCAGAATGGCTTGAGATATGCCCTGGATCTCAGGCCTTTCCCAAGGTGCTCTGGAGAAGCAGAGAAGAGCGCAGCAGGGTCAACCCCCAGGGAAACA
AAAAAACAAAAAACAAGGATTCTAAGGTGACGAAGGCAAGAACTGAAAGCAGACTGTAGTGACAGAGGCAATGAGTGCCCGGGCCACACGGCCCCGAAGCCGTCGAGGGAGGCATCCTCTGCCTGGGG
AGCTAGACCCTGTAGCTGAGAGCTCAGAGGAAGTAGATGCCAACAATGGACGCTTCGAGACTAAACCTGAGCTGCATCAGGAATACCTTGGTCCTGGCCTTCAGAGCCCAAGGAACTGGATCAAGGAG
GGTTGTGATGTGGGATCCCATGCGGTTCTATCCTTGAGCCCAGAAGAACAGTGCGAGCCTGAGGTGGAAGCCCACCAGGTCCTGCAAGAAGCCCCCCTGGATAGTGGCCCTGCTGAGATATCAGTACC
CAGTGTGTATGAGACCTTGCAGTGCAGGCTGAGCTCCCTTGAGGCAGTTGTAGCTGCCTTGCGCCACCACTCGCTAAGCTTTCCAAAGTCAGTGGAAGCAGAAGACAGAGACCAGGGGGCTCCGGGGC
CCTTTGGTGATGAGAAAGAAGACGCAGGACCTGGACAGCAGGAGGCTGCTCGCCTCATAGAGAGGAACGCCTGGCTGCGGCTAGCCCTGTGCAACCGGGAGGATGAGCTGGCATGCACTCAGGCTTCA
CTGCAGGACGCCCAGGCAGAGAAGGAGACTCTGCAGAGACAGGAGCTGGAGGATTCCCTGATGCAGATGGAGGCCTCCCCACCTACCCCCATCCTCAGAGCAGGGCGTAGAAACAGCAACTCCAGTAC
TTCTGGGGCAGAAAGGAGACCCTGGGTACCTCAGGACTCTTCCATGGCTCACCCCTTTCTCCAACGCCTCCGGAGTGACTCCAGCACCCAGAGCTTTGGGTGCCTTTCCACACAGCATCCAGCCCCAG
AGACGTACCTCATGGAAGACCAGATGGGGCAGCTCCAGGGGAGCATTGAGAAGTTGAAGTGCTTCAACCGTCTTCTTCTGGCTGTGCTCCAGGGCTACAAGGGCCGTTGTGAGAGCCTCAGCATTAAG
CTGGCCAAGCGGGAAGCCGAGGCCACAGCCCTGCGCCTGGCTCTGCAGTATAGTGAGGACTGTGAGGAGGTGTATGAGGTGCTGCTAGCTCTGAAGATGGCTGGCCTAGGAACTGGAGTTGGAACTAC
CAAGGGTGACCTGCAGGCTGCTGAGAAGGAGGCCTCTAGGCTGCTGATGAAGAAGGAAGCAACCATGGAGGTAGAGACACCCCAGCCCAGCTCAGAGGGCAGTGGTGTGGACAAGCCTACACCAGAGG
AACTGGCCTCTCAGCTCCATGGCTATGTCCAGCATCTCCGGGAACGCTGGGCTCTGGTGAAGATCCCCGAAGAACTTGGCCCTGTCACTGCACCCAAGGCCACTATGCCCCATGCAGAAGCAACAGTG
CAGGCCATTCTGGAGATACAACCTGGCCCCACCTTGCCCCATCTGGAGAAGTCTCAGATCCAGCAGGACCTAGCAGCTACTCGGGACAGGCTGGCTGATCTGGTGCTGAGGCTGCAGCTAACACAACG
AGAGAAGCGTGGGTTGGAGCTGCGGGAGGCTGCACTGCGGGCCCAGGGCCCTGCCCACCAGCTACTCCTGCAGCAGCTTCGCTGGGAGCGGGCTCACTTTGCGGGTGATGGCAGCAGTGGAGGCAGTA
GCGAGGACCCAAGCAGCGAGGAGGAGGCTGGGGAGGACAGACAGCAGCACTACCAGGGCCCTCTTGCCCTCCTGGATGGTCAGATGGGCAAAGTGTGGGACTCTGAGAATGTGTCCCAGGAACTGTCA
GCGTCCTTGGCCCGGGCAATAGACCTGCGGGCACAGCTGCAGTCCCTGCGGCAGCAGCTGGAACAGGTGACTCAGAAGGGCCGAACCAGACGTGTTCAGAGTGCCGAGCTGTCCAGAGAACTGTGCAA
GGCTCACAGTGCTCTGGCCTTGGCCTTCAGAGGAGCCCACCGGAAGCAGGAAGAGCAACGCCTGAAGTTGGAGCAGCAGGTGGCTCGGTTGCAGGCTCAGCAGGCAGAAGAGCTGGCAGTGCTGACAG
CCACCGCTAGGGCCCTGGGGAAGCCTGGGGCACCCCAGCCAGCCCAGACTTTCCTGTAGGGCCCGGACCACGTTTGCTTGTGACACAGAGGTGGCTGGAGTGTCACAGTGTCCTGTGGTGGGCGGAGA
GGTGGTCCAACAACTAAGAGCAGGGTCTCCAATTGCGGGCACTTGAGTTTAATTGCCAGCCTCAGCAGCCATGGCGCCTGTGACTCCGGGTCAAGGAGATCTGGCACCCCCTTCTGGCCTCTGCAGGC
TCTGTACTAATGTTCCCTCACACATGTAATTAGACAAAGTAACTTA

hide sequence

RefSeq Acc Id:

XM_006509657 ⟹ XP_006509720

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,838,009 - 71,848,478 (-)	NCBI
GRCm38	8	71,385,365 - 71,395,832 (-)	NCBI

Sequence:

show sequence

TTTGGCTATCGCAGCCTCAGTAGCCAGTGGCCAGAATGGCTTGAGATATGCCCTGGATCTCAGG
CCTTTCCCAAGGTGCTCTGGAGAAGCAGAGAAGAGCGCAGCAGGGTCAACCCCCAGGGAAACAAAAAAACAAAAAACAAGGATTCTAAGGTGACGAAGGCAAGAACTGAAAGCAGACTGTAGTGACAG
AGGCAATGAGTGCCCGGGCCACACGGCCCCGAAGCCGTCGAGGGAGGCATCCTCTGCCTGGGGAGCTAGACCCTGTAGCTGAGAGCTCAGAGGAAGTAGATGCCAACAATGGACGCTTCGAGACTAAA
CCTGAGCTGCATCAGGAATACCTTGGTCCTGGCCTTCAGAGCCCAAGGAACTGGATCAAGGAGGGTTGTGATGTGGGATCCCATGCGGTTCTATCCTTGAGCCCAGAAGAACAGTGCGAGCCTGAGGT
GGAAGCCCACCAGGTCCTGCAAGAAGCCCCCCTGGATAGTGGCCCTGCTGAGATATCAGTACCCAGTGTGTATGAGACCTTGCAGTGCAGGCTGAGCTCCCTTGAGGCAGTTGTAGCTGCCTTGCGCC
ACCACTCGCTAAGCTTTCCAAAGTCAGTGGAAGCAGAAGACAGAGACCAGGGGGCTCCGGGGCCCTTTGGTGATGAGAAAGAAGACGCAGGACCTGGACAGCAGGAGGCTGCTCGCCTCATAGAGAGG
AACGCCTGGCTGCGGCTAGCCCTGTGCAACCGGGAGGATGAGCTGGCATGCACTCAGGCTTCACTGCAGGACGCCCAGGCAGAGAAGGAGACTCTGCAGAGACAGGTACAGGAGCTGGAGGATTCCCT
GATGCAGATGGAGGCCTCCCCACCTACCCCCATCCTCAGAGCAGGGCGTAGAAACAGCAACTCCAGTACTTCTGGGGCAGAAAGGAGACCCTGGGTACCTCAGGACTCTTCCATGGCTCACCCCTTTC
TCCAACGCCTCCGGAGTGACTCCAGCACCCAGAGCTTTGGGTGCCTTTCCACACAGCATCCAGCCCCAGAGACGTACCTCATGGAAGACCAGATGGGGCAGCTCCAGGGGAGCATTGAGAAGTTGAAG
TGCTTCAACCGTCTTCTTCTGGCTGTGCTCCAGGGCTACAAGGGCCGTTGTGAGAGCCTCAGCATTAAGCTGGCCAAGCGGGAAGCCGAGGCCACAGCCCTGCGCCTGGCTCTGCAGTATAGCTCAGA
GGGCAGTGGTGTGGACAAGCCTACACCAGAGGAACTGGCCTCTCAGCTCCATGGCTATGTCCAGCATCTCCGGGAACGCTGGGCTCTGGTGAAGATCCCCGAAGAACTTGGCCCTGTCACTGCACCCA
AGGCCACTATGCCCCATGCAGAAGCAACAGTGCAGGCCATTCTGGAGATACAACCTGGCCCCACCTTGCCCCATCTGGAGAAGTCTCAGATCCAGCAGGACCTAGCAGCTACTCGGGACAGGCTGGCT
GATCTGGTGCTGAGGCTGCAGCTAACACAACGAGAGAAGCGTGGGTTGGAGCTGCGGGAGGCTGCACTGCGGGCCCAGGGCCCTGCCCACCAGCTACTCCTGCAGCAGCTTCGCTGGGAGCGGGCTCA
CTTTGCGGGTGATGGCAGCAGTGGAGGCAGTAGCGAGGACCCAAGCAGCGAGGAGGAGGCTGGGGAGGACAGACAGCAGCACTACCAGGGCCCTCTTGCCCTCCTGGATGGTCAGATGGGCAAAGTGT
GGGACTCTGAGAATGTGTCCCAGGAACTGTCAGCGTCCTTGGCCCGGGCAATAGACCTGCGGGCACAGCTGCAGTCCCTGCGGCAGCAGCTGGAACAGGTGACTCAGAAGGGCCGAACCAGACGTGTT
CAGAGTGCCGAGCTGTCCAGAGAACTGTGCAAGGCTCACAGTGCTCTGGCCTTGGCCTTCAGAGGAGCCCACCGGAAGCAGGAAGAGCAACGCCTGAAGTTGGAGCAGCAGGTGGCTCGGTTGCAGGC
TCAGCAGGCAGAAGAGCTGGCAGTGCTGACAGCCACCGCTAGGGCCCTGGGGAAGCCTGGGGCACCCCAGCCAGCCCAGACTTTCCTGTAGGGCCCGGACCACGTTTGCTTGTGACACAGAGGTGGCT
GGAGTGTCACAGTGTCCTGTGGTGGGCGGAGAGGTGGTCCAACAACTAAGAGCAGGGTCTCCAATTGCGGGCACTTGAGTTTAATTGCCAGCCTCAGCAGCCATGGCGCCTGTGACTCCGGGTCAAGG
AGATCTGGCACCCCCTTCTGGCCTCTGCAGGCTCTGTACTAATGTTCCCTCACACATGTAATTAGACAAAGTAACTTACAAACCTG

hide sequence

RefSeq Acc Id:

XR_003947258

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	71,838,013 - 71,848,480 (-)	NCBI
GRCm38	8	71,385,365 - 71,395,834 (-)	NCBI

Sequence:

show sequence

CTTTTGGCTATCGCAGCCTCAGTAGCCAGTGGCCAGAATGGCTTGAGATATGCCCTGGATCTCAGGCCTTTCCCAAGGTGCTCTGGAGAAGCAGAGAAGAGCGCAGCAGGGTCAACCCCCAGGGAAAC
AAAAAAACAAAAAACAAGGATTCTAAGGTGACGAAGGCAAGAACTGAAAGCAGACTGTAGTGACAGAGGCAATGAGTGCCCGGGCCACACGGCCCCGAAGCCGTCGAGGGAGGCATCCTCTGCCTGGG
GAGCTAGACCCTGTAGCTGAGAGCTCAGAGGAAGTAGATGCCAACAATGGACGCTTCGAGACTAAACCTGAGCTGCATCAGGAATACCTTGGTCCTGGCCTTCAGAGCCCAAGGAACTGGATCAAGGA
GGGTTGTGATGTGGGATCCCATGCGGTTCTATCCTTGAGCCCAGAAGAACAGTGCGAGCCTGAGGTGGAAGCCCACCAGGTCCTGCAAGAAGCCCCCCTGGATAGTGGCCCTGCTGAGATATCAGTAC
CCAGTGTGTATGAGACCTTGCAGTGCAGGCTGAGCTCCCTTGAGGCAGTTGTAGCTGCCTTGCGCCACCACTCGCTAAGCTTTCCAAAGTCAGTGGAAGCAGAAGACAGAGACCAGGGGGCTCCGGGG
CCCTTTGGTGATGAGAAAGAAGACGCAGGACCTGGACAGCAGGAGGCTGCTCGCCTCATAGAGAGGAACGCCTGGCTGCGGCTAGCCCTGTGCAACCGGGAGGATGAGCTGGCATGCACTCAGGCTTC
ACTGCAGGACGCCCAGGCAGAGAAGGAGACTCTGCAGAGACAGGTACAGGAGCTGGAGGATTCCCTGATGCAGATGGAGGCCTCCCCACCTACCCCCATCCTCAGAGCAGGGCGTAGAAACAGCAACT
CCAGTACTTCTGGGGCAGAAAGGAGACCCTGGGTACCTCAGGACTCTTCCATGGCTCACCCCTTTCTCCAACGCCTCCGGAGTGACTCCAGCACCCAGAGCTTTGGGTGCCTTTCCACACAGCATCCA
GCCCCAGAGACGTACCTCATGGAAGACCAGATGGGGCAGCTCCAGGGGAGCATTGAGAAGTTGAAGTGCTTCAACCGTCTTCTTCTGGCTGTGCTCCAGGGCTACAAGGGCCGTTGTGAGAGCCTCAG
CATTAAGCTGGCCAAGCGGGAAGCCGAGGCCACAGCCCTGCGCCTGGCTCTGCAGTATAGTGAGGACTGTGAGGAGGTGTATGAGGTGCTGCTAGCTCTGAAGATGGCTGGCCTAGGAACTGGAGTTG
GAACTACCAAGGGTGACCTGCAGGCTGCTGAGAAGGAGGCCTCTAGGCTGCTGATGAAGAAGGAAGCAACCATGGAGCTCAGAGGGCAGTGGTGTGGACAAGCCTACACCAGAGGAACTGGCCTCTCA
GCTCCATGGCTATGTCCAGCATCTCCGGGAACGCTGGGCTCTGGTGAAGATCCCCGAAGAACTTGGCCCTGTCACTGCACCCAAGGCCACTATGCCCCATGCAGAAGCAACAGTGCAGGCCATTCTGG
AGATACAACCTGGCCCCACCTTGCCCCATCTGGAGAAGTCTCAGATCCAGCAGGACCTAGCAGCTACTCGGGACAGGCTGGCTGATCTGGTGCTGAGGCTGCAGCTAACACAACGAGAGAAGCGTGGG
TTGGAGCTGCGGGAGGCTGCACTGCGGGCCCAGGGCCCTGCCCACCAGCTACTCCTGCAGCAGCTTCGCTGGGAGCGGGCTCACTTTGCGGGTGATGGCAGCAGTGGAGGCAGTAGCGAGGACCCAAG
CAGCGAGGAGGAGGCTGGGGAGGACAGACAGCAGCACTACCAGGGCCCTCTTGCCCTCCTGGATGGTCAGATGGGCAAAGTGTGGGACTCTGAGAATGTGTCCCAGGAACTGTCAGCGTCCTTGGCCC
GGGCAATAGACCTGCGGGCACAGCTGCAGTCCCTGCGGCAGCAGCTGGAACAGGTGACTCAGAAGGGCCGAACCAGACGTGTTCAGAGTGCCGAGCTGTCCAGAGAACTGTGCAAGGCTCACAGTGCT
CTGGCCTTGGCCTTCAGAGGAGCCCACCGGAAGCAGGAAGAGCAACGCCTGAAGTTGGAGCAGCAGGTGGCTCGGTTGCAGGCTCAGCAGGCAGAAGAGCTGGCAGTGCTGACAGCCACCGCTAGGGC
CCTGGGGAAGCCTGGGGCACCCCAGCCAGCCCAGACTTTCCTGTAGGGCCCGGACCACGTTTGCTTGTGACACAGAGGTGGCTGGAGTGTCACAGTGTCCTGTGGTGGGCGGAGAGGTGGTCCAACAA
CTAAGAGCAGGGTCTCCAATTGCGGGCACTTGAGTTTAATTGCCAGCCTCAGCAGCCATGGCGCCTGTGACTCCGGGTCAAGGAGATCTGGCACCCCCTTCTGGCCTCTGCAGGCTCTGTACTAATGT
TCCCTCACACATGTAATTAGACAAAGTAACTTACAAA

hide sequence


Protein RefSeqs	NP_852083	(Get FASTA)	NCBI Sequence Viewer
	XP_006509719	(Get FASTA)	NCBI Sequence Viewer
	XP_006509720	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH26453	(Get FASTA)	NCBI Sequence Viewer
	EDL28914	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000045668
	ENSMUSP00000045668.8
GenBank Protein	Q8R370	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_852083 ⟸ NM_181418

- UniProtKB:

Q8R370 (UniProtKB/Swiss-Prot), E9QKT2 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSARATRPRSRRGRHPLPGELDPVAESSEEVDANNGRFETKPELHQEYLGPGLQSPRNWIKEGCDVGSHAVLSLSPEEQCEPEVEAHQVLQEAPLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHH
SLSFPKSVEAEDRDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQDAQAEKETLQRQVQELEDSLMQMEASPPTPILRAGRRNSNSSTSGAERRPWVPQDSSMAHPFLQ
RLRSDSSTQSFGCLSTQHPAPETYLMEDQMGQLQGSIEKLKCFNRLLLAVLQGYKGRCESLSIKLAKREAEATALRLALQYSEDCEEVYEVLLALKMAGLGTGVGTTKGDLQAAEKEASRLLMKKEAT
MEVETPQPSSEGSGVDKPTPEELASQLHGYVQHLRERWALVKIPEELGPVTAPKATMPHAEATVQAILEIQPGPTLPHLEKSQIQQDLAATRDRLADLVLRLQLTQREKRGLELREAALRAQGPAHQL
LLQQLRWERAHFAGDGSSGGSSEDPSSEEEAGEDRQQHYQGPLALLDGQMGKVWDSENVSQELSASLARAIDLRAQLQSLRQQLEQVTQKGRTRRVQSAELSRELCKAHSALALAFRGAHRKQEEQRL
KLEQQVARLQAQQAEELAVLTATARALGKPGAPQPAQTFL

hide sequence

RefSeq Acc Id:

XP_006509719 ⟸ XM_006509656

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSARATRPRSRRGRHPLPGELDPVAESSEEVDANNGRFETKPELHQEYLGPGLQSPRNWIKEGC
DVGSHAVLSLSPEEQCEPEVEAHQVLQEAPLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHHSLSFPKSVEAEDRDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQ
DAQAEKETLQRQELEDSLMQMEASPPTPILRAGRRNSNSSTSGAERRPWVPQDSSMAHPFLQRLRSDSSTQSFGCLSTQHPAPETYLMEDQMGQLQGSIEKLKCFNRLLLAVLQGYKGRCESLSIKLA
KREAEATALRLALQYSEDCEEVYEVLLALKMAGLGTGVGTTKGDLQAAEKEASRLLMKKEATMEVETPQPSSEGSGVDKPTPEELASQLHGYVQHLRERWALVKIPEELGPVTAPKATMPHAEATVQA
ILEIQPGPTLPHLEKSQIQQDLAATRDRLADLVLRLQLTQREKRGLELREAALRAQGPAHQLLLQQLRWERAHFAGDGSSGGSSEDPSSEEEAGEDRQQHYQGPLALLDGQMGKVWDSENVSQELSAS
LARAIDLRAQLQSLRQQLEQVTQKGRTRRVQSAELSRELCKAHSALALAFRGAHRKQEEQRLKLEQQVARLQAQQAEELAVLTATARALGKPGAPQPAQTFL

hide sequence

RefSeq Acc Id:

XP_006509720 ⟸ XM_006509657

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSARATRPRSRRGRHPLPGELDPVAESSEEVDANNGRFETKPELHQEYLGPGLQSPRNWIKEGCDVGSHAVLSLSPEEQCEPEVEAHQVLQEAPLDSGPAEISVPSVYETLQCRLSSLEAVVAALRHH
SLSFPKSVEAEDRDQGAPGPFGDEKEDAGPGQQEAARLIERNAWLRLALCNREDELACTQASLQDAQAEKETLQRQVQELEDSLMQMEASPPTPILRAGRRNSNSSTSGAERRPWVPQDSSMAHPFLQ
RLRSDSSTQSFGCLSTQHPAPETYLMEDQMGQLQGSIEKLKCFNRLLLAVLQGYKGRCESLSIKLAKREAEATALRLALQYSSEGSGVDKPTPEELASQLHGYVQHLRERWALVKIPEELGPVTAPKA
TMPHAEATVQAILEIQPGPTLPHLEKSQIQQDLAATRDRLADLVLRLQLTQREKRGLELREAALRAQGPAHQLLLQQLRWERAHFAGDGSSGGSSEDPSSEEEAGEDRQQHYQGPLALLDGQMGKVWD
SENVSQELSASLARAIDLRAQLQSLRQQLEQVTQKGRTRRVQSAELSRELCKAHSALALAFRGAHRKQEEQRLKLEQQVARLQAQQAEELAVLTATARALGKPGAPQPAQTFL

hide sequence

Ensembl Acc Id:

ENSMUSP00000045668 ⟸ ENSMUST00000049184

Ensembl Acc Id:

ENSMUSP00000148319 ⟸ ENSMUST00000212626

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8R370-F1-model_v2	AlphaFold	Q8R370	1-680	view protein structure

RGD ID:

8667387

Promoter ID:

EPDNEW_M11725

Type:

multiple initiation site

Name:

Ushbp1_1

Description:

Mus musculus USH1 protein network component harmonin bindingprotein 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	71,395,802 - 71,395,862	EPDNEW

RGD ID:

6843864

Promoter ID:

MM_KWN:54775

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Kidney

Transcripts:

UC009MCY.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	73,909,896 - 73,910,396 (-)	MPROMDB

RGD ID:

6842501

Promoter ID:

MM_KWN:54778

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, Kidney, Lung

Transcripts:

AK009740_2310041K03RIK, NM_181418

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	73,919,651 - 73,920,697 (-)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000034911	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000049184	ENTREZGENE
	ENSMUST00000049184.9	UniProtKB/Swiss-Prot
InterPro	USBP1-like	UniProtKB/Swiss-Prot
	USH1C-bd_PDZ_domain	UniProtKB/Swiss-Prot
KEGG Report	mmu:234395	UniProtKB/Swiss-Prot
MGD	MGI:1922920	ENTREZGENE
NCBI Gene	Ushbp1	ENTREZGENE
PANTHER	PTHR23347	UniProtKB/Swiss-Prot
	USHER SYNDROME TYPE-1C PROTEIN-BINDING PROTEIN 1	UniProtKB/Swiss-Prot
Pfam	MCC-bdg_PDZ	UniProtKB/Swiss-Prot
PhenoGen	Ushbp1	PhenoGen
UniProt	A0A1D5RLD3_MOUSE	UniProtKB/TrEMBL
	E9QKT2	ENTREZGENE
	Q8R370	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	E9QKT2	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-26	Ushbp1	USH1 protein network component harmonin binding protein 1	2210404N08Rik	RIKEN cDNA 2210404N08 gene	Symbol and/or name updated	27372883	PROVISIONAL
2024-08-21	2210404N08Rik	RIKEN cDNA 2210404N08 gene	Ushbp1	USH1 protein network component harmonin binding protein 1	Symbol and/or name change	5135510	APPROVED
2017-03-21	Ushbp1	USH1 protein network component harmonin binding protein 1		Usher syndrome 1C binding protein 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Mammalian Phenotype