Ushbp1 (USH1 protein network component harmonin binding protein 1) - Rat Genome Database
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Gene: Ushbp1 (USH1 protein network component harmonin binding protein 1) Mus musculus
Analyze
Symbol: Ushbp1
Name: USH1 protein network component harmonin binding protein 1
RGD ID: 1322005
MGI Page MGI
Description: Predicted to have PDZ domain binding activity. Is expressed in embryo; heart; liver; and lung. Orthologous to human USHBP1 (USH1 protein network component harmonin binding protein 1); INTERACTS WITH amosite asbestos; benzo[a]pyrene; benzo[b]fluoranthene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2210404N08Rik; 9430064H24; AIE-75 binding protein; AIEBP; MCC2; USH1C-binding protein 1; Usher syndrome 1C binding protein 1; Usher syndrome type-1C protein-binding protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,836,918 - 71,848,480 (-)NCBIGRCm39mm39
GRCm38871,384,274 - 71,395,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,384,272 - 71,395,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,908,173 - 73,919,700 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,314,358 - 74,324,774 (-)NCBImm8
Celera873,908,945 - 73,920,510 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. MGD data from the GO Consortium
2. RGD automated import pipeline
3. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:22016184   PMID:30635555  


Genomics

Comparative Map Data
Ushbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,836,918 - 71,848,480 (-)NCBIGRCm39mm39
GRCm38871,384,274 - 71,395,834 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,384,272 - 71,395,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,908,173 - 73,919,700 (-)NCBIGRCm37mm9NCBIm37
MGSCv36874,314,358 - 74,324,774 (-)NCBImm8
Celera873,908,945 - 73,920,510 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
USHBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,249,171 - 17,282,786 (-)EnsemblGRCh38hg38GRCh38
GRCh381917,249,171 - 17,264,753 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371917,360,537 - 17,375,605 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,221,849 - 17,236,544 (-)NCBINCBI36hg18NCBI36
Build 341917,221,848 - 17,236,544NCBI
Celera1917,262,392 - 17,277,301 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1916,927,891 - 16,942,605 (-)NCBIHuRef
CHM1_11917,360,312 - 17,375,079 (-)NCBICHM1_1
Ushbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01619,781,276 - 19,791,832 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,781,279 - 19,791,832 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,641,397 - 19,651,953 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,546,489 - 18,557,045 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11618,546,486 - 18,555,536 (-)NCBI
Celera1618,262,900 - 18,273,456 (-)NCBICelera
Cytogenetic Map16p14NCBI
Ushbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524946,561 - 957,029 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955524945,044 - 954,424 (+)NCBIChiLan1.0ChiLan1.0
USHBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11917,711,987 - 17,726,576 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,711,987 - 17,726,524 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01916,737,813 - 16,752,891 (-)NCBIMhudiblu_PPA_v0panPan3
USHBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2045,477,592 - 45,486,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12045,477,070 - 45,486,552 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ushbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,584,890 - 3,593,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USHBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,411,652 - 60,425,899 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,411,629 - 60,422,577 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
USHBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,758,962 - 15,772,737 (-)NCBI
ChlSab1.1 Ensembl615,758,777 - 15,772,471 (-)Ensembl
Ushbp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624908661,663 - 670,226 (+)NCBI

Position Markers
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:556
Count of miRNA genes:345
Interacting mature miRNAs:393
Transcripts:ENSMUST00000049184
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000049184   ⟹   ENSMUSP00000045668
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,385,369 - 71,395,785 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212496
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,387,233 - 71,389,334 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212516
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,387,050 - 71,390,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212626   ⟹   ENSMUSP00000148319
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,384,272 - 71,395,790 (-)Ensembl
RefSeq Acc Id: ENSMUST00000213000
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl871,387,785 - 71,395,802 (-)Ensembl
RefSeq Acc Id: NM_181418   ⟹   NP_852083
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,836,918 - 71,848,445 (-)NCBI
GRCm38871,384,274 - 71,395,801 (-)NCBI
MGSCv37873,908,173 - 73,919,700 (-)RGD
Celera873,908,945 - 73,920,510 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509656   ⟹   XP_006509719
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,838,017 - 71,848,479 (-)NCBI
GRCm38871,385,365 - 71,395,833 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006509657   ⟹   XP_006509720
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,838,009 - 71,848,478 (-)NCBI
GRCm38871,385,365 - 71,395,832 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003947258
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,838,013 - 71,848,480 (-)NCBI
GRCm38871,385,365 - 71,395,834 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_852083 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509719 (Get FASTA)   NCBI Sequence Viewer  
  XP_006509720 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH26453 (Get FASTA)   NCBI Sequence Viewer  
  EDL28914 (Get FASTA)   NCBI Sequence Viewer  
  Q8R370 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_852083   ⟸   NM_181418
- UniProtKB: Q8R370 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509719   ⟸   XM_006509656
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006509720   ⟸   XM_006509657
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000045668   ⟸   ENSMUST00000049184
RefSeq Acc Id: ENSMUSP00000148319   ⟸   ENSMUST00000212626

Promoters
RGD ID:8667387
Promoter ID:EPDNEW_M11725
Type:multiple initiation site
Name:Ushbp1_1
Description:Mus musculus USH1 protein network component harmonin bindingprotein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,395,802 - 71,395,862EPDNEW
RGD ID:6843864
Promoter ID:MM_KWN:54775
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:UC009MCY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,909,896 - 73,910,396 (-)MPROMDB
RGD ID:6842501
Promoter ID:MM_KWN:54778
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   Kidney,   Lung
Transcripts:AK009740_2310041K03RIK,   NM_181418
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,919,651 - 73,920,697 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922920 AgrOrtholog
Ensembl Genes ENSMUSG00000034911 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000045668 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148319 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049184 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212626 UniProtKB/TrEMBL
InterPro USBP1-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  USH1C-bd_PDZ_domain UniProtKB/Swiss-Prot
KEGG Report mmu:234395 UniProtKB/Swiss-Prot
MGD MGI:1922920 ENTREZGENE
NCBI Gene 234395 ENTREZGENE
PANTHER PTHR23347 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MCC-bdg_PDZ UniProtKB/Swiss-Prot
PhenoGen Ushbp1 PhenoGen
UniGene Mm.34874 ENTREZGENE
UniProt A0A1D5RLD3_MOUSE UniProtKB/TrEMBL
  Q8R370 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QKT2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Ushbp1  USH1 protein network component harmonin binding protein 1    Usher syndrome 1C binding protein 1  Symbol and/or name change 5135510 APPROVED