Uhrf2 (ubiquitin-like, containing PHD and RING finger domains 2) - Rat Genome Database

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Gene: Uhrf2 (ubiquitin-like, containing PHD and RING finger domains 2) Mus musculus
Analyze
Symbol: Uhrf2
Name: ubiquitin-like, containing PHD and RING finger domains 2
RGD ID: 1320633
MGI Page MGI
Description: Enables histone binding activity. Predicted to be involved in several processes, including negative regulation of gene expression via chromosomal CpG island methylation; protein autoubiquitination; and regulation of cell cycle. Located in heterochromatin and nucleus. Is expressed in several structures, including central nervous system; ear; early conceptus; female reproductive system; and urinary system. Orthologous to human UHRF2 (ubiquitin like with PHD and ring finger domains 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310065A22Rik; AI426270; AW214556; D130071B19Rik; E3 ubiquitin-protein ligase UHRF2; N; Nirf; Np95-like ring finger protein; nuclear protein 97; nuclear zinc finger protein Np97; RING-type E3 ubiquitin transferase UHRF2; ubiquitin-like PHD and RING finger domain-containing protein 2; ubiquitin-like-containing PHD and RING finger domains protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391930,007,920 - 30,071,126 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1930,007,913 - 30,071,122 (+)EnsemblGRCm39 Ensembl
GRCm381930,030,430 - 30,093,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,030,513 - 30,093,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv371930,105,003 - 30,168,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,096,600 - 30,159,723 (+)NCBIMGSCv36mm8
Celera1930,805,906 - 30,868,941 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
heterochromatin  (IDA)
nucleoplasm  (IEA,ISO)
nucleus  (IDA,ISO,ISS)
pericentric heterochromatin  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14741369   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16919269   PMID:18287559  
PMID:20059953   PMID:20412781   PMID:21267068   PMID:21598301   PMID:21677750   PMID:21873635   PMID:22064703   PMID:22988430   PMID:23929336   PMID:24134842   PMID:27626380   PMID:28115522  
PMID:28402695   PMID:28900727   PMID:31024001   PMID:32372448   PMID:33554859   PMID:35285483   PMID:37253089   PMID:38338822   PMID:38355793  


Genomics

Comparative Map Data
Uhrf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391930,007,920 - 30,071,126 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1930,007,913 - 30,071,122 (+)EnsemblGRCm39 Ensembl
GRCm381930,030,430 - 30,093,726 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1930,030,513 - 30,093,722 (+)EnsemblGRCm38mm10GRCm38
MGSCv371930,105,003 - 30,168,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361930,096,600 - 30,159,723 (+)NCBIMGSCv36mm8
Celera1930,805,906 - 30,868,941 (+)NCBICelera
Cytogenetic Map19C1NCBI
cM Map1924.73NCBI
UHRF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3896,413,199 - 6,507,054 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl96,413,151 - 6,507,056 (+)EnsemblGRCh38hg38GRCh38
GRCh3796,413,199 - 6,507,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3696,403,151 - 6,497,051 (+)NCBINCBI36Build 36hg18NCBI36
Celera96,350,611 - 6,444,524 (+)NCBICelera
Cytogenetic Map9p24.1NCBI
HuRef96,368,448 - 6,462,031 (+)NCBIHuRef
CHM1_196,413,916 - 6,507,825 (+)NCBICHM1_1
T2T-CHM13v2.096,418,255 - 6,512,105 (+)NCBIT2T-CHM13v2.0
Uhrf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81237,224,050 - 237,291,406 (+)NCBIGRCr8
mRatBN7.21227,814,639 - 227,877,907 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1227,814,963 - 227,877,904 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,216,934 - 236,279,927 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01243,146,619 - 243,209,613 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,968,772 - 236,031,886 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01248,228,496 - 248,291,984 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1248,228,496 - 248,291,978 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01255,476,029 - 255,539,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,777,723 - 233,841,343 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11233,941,745 - 234,005,366 (+)NCBI
Celera1224,961,724 - 225,024,651 (+)NCBICelera
Cytogenetic Map1q52NCBI
Uhrf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543410,337,564 - 10,413,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543410,337,871 - 10,413,290 (+)NCBIChiLan1.0ChiLan1.0
UHRF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211118,069,622 - 118,163,049 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19118,075,570 - 118,168,985 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v096,228,895 - 6,322,319 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.196,409,081 - 6,502,484 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl96,409,081 - 6,502,484 (+)Ensemblpanpan1.1panPan2
UHRF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11127,406,275 - 27,474,971 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1127,405,977 - 27,623,005 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1126,181,369 - 26,258,264 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01128,256,562 - 28,333,875 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1128,256,658 - 28,333,060 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11126,980,701 - 27,057,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01126,799,633 - 26,876,818 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01127,468,621 - 27,545,966 (+)NCBIUU_Cfam_GSD_1.0
Uhrf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947142,457,520 - 142,537,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936539910,172 - 992,983 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936539910,191 - 990,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UHRF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1215,730,225 - 215,807,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11215,730,212 - 215,807,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21241,357,141 - 241,363,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UHRF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11273,010,697 - 73,106,163 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1273,007,830 - 73,106,120 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603861,349,917 - 61,448,467 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uhrf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473610,913,643 - 11,003,525 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473610,901,260 - 11,004,832 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Uhrf2
1909 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1116
Count of miRNA genes:648
Interacting mature miRNAs:794
Transcripts:ENSMUST00000025739, ENSMUST00000112552, ENSMUST00000123773, ENSMUST00000127244, ENSMUST00000129420, ENSMUST00000134518, ENSMUST00000137368, ENSMUST00000143769, ENSMUST00000150532
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301271Datd_mdopamine transporter density (mouse)Not determined19132340234Mouse
13506250Renmq1_mrenal mercury accumulation QTL 1 (mouse)192738559461385705Mouse
10412251Mnp_mmodifier of Niemann Pick type C1 (mouse)Not determined192023431454234461Mouse
1357596Tgct3_mtesticular germ cell tumor 3 (mouse)Not determined192198409132912719Mouse
11039522Tbbr4_mTrypanosoma brucei brucei response 4 (mouse)19531332639313470Mouse
1301336Alcp23_malcohol preference locus 23 (mouse)Not determined191591260749912719Mouse
1558876W3q14_mweight 3 weeks QTL 14 (mouse)Not determined192231332653911504Mouse
1302019Pgia23_mproteoglycan induced arthritis 23 (mouse)Not determined19978745343787602Mouse
1301633Alcp24_malcohol preference locus 24 (mouse)Not determined191591260749912719Mouse
14928311Manh85_mmandible shape 85 (mouse)191191478945914789Mouse
1357568Tgct4_mtesticular germ cell tumor 4 (mouse)Not determined192777198535295381Mouse
1301451Ath16_matherosclerosis 16 (mouse)Not determined192542691759427005Mouse
4141659Pbwg20_mpostnatal body weight growth 20 (mouse)Not determined192137870555378928Mouse
10413881Moe2_mmodifier of epilepsy 2 (mouse)191492301648923138Mouse
1302004Lfp2_mlong free running period 2 (mouse)Not determined191829516252295381Mouse
1300923Bits4_mbitterness sensitivity 4 (mouse)Not determined19332321637323348Mouse
12790634Ebm1_mEpidermolysis Bullosa modifier 1 (mouse)192498843958988439Mouse
4141138Femwf11_mfemur work to failure 11 (mouse)Not determined2814034861420004Mouse
4142343Moen2_mmodifier of engrailed QTL 2 (mouse)Not determined192023431454234461Mouse
1302123Tlsr8_mthymic lymphoma suppressor region 8 (mouse)Not determined192513600242388916Mouse
4142406Pbctlp1_mperipheral blood cytotoxic T lymphocyte percentage 1 (mouse)Not determined132875174Mouse
1300904Chab5_mcholesterol absorption 5 (mouse)Not determined19165376435653927Mouse
26884385Skwq14_mskull length QTL 14, 16 week (mouse)19325000035877400Mouse
1301800Faq10_mfluctuating asymmetry QTL 10 (mouse)Not determined19332321637323348Mouse
1300591Pas3_mpulmonary adenoma susceptibility 3 (mouse)Not determined19332321637323348Mouse
1302063Eae19_mexperimental allergic encephalomyelitis 19 (mouse)Not determined191829516252295381Mouse
1302126Skull26_mskull morphology 26 (mouse)Not determined19332321637323348Mouse
1301228Iba4_minduction of brown adipocytes 4 (mouse)Not determined19930571543305821Mouse

Markers in Region
AI426270  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381930,093,489 - 30,093,606UniSTSGRCm38
MGSCv371930,167,979 - 30,168,096UniSTSGRCm37
Celera1930,868,704 - 30,868,821UniSTS
Cytogenetic Map19C1UniSTS
Whitehead/MRC_RH19303.35UniSTS
Whitehead/MRC_RH19303.47UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001419334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_144873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB116653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC111048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC162613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF274047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000025739   ⟹   ENSMUSP00000025739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,007,913 - 30,071,122 (+)Ensembl
GRCm38.p6 Ensembl1930,030,513 - 30,093,722 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,007,989 - 30,034,563 (+)Ensembl
GRCm38.p6 Ensembl1930,030,589 - 30,057,163 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,066,456 - 30,071,122 (+)Ensembl
GRCm38.p6 Ensembl1930,089,056 - 30,093,722 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,063,094 - 30,064,716 (+)Ensembl
GRCm38.p6 Ensembl1930,085,694 - 30,087,316 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129420
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,051,183 - 30,052,921 (+)Ensembl
GRCm38.p6 Ensembl1930,073,783 - 30,075,521 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,007,913 - 30,036,212 (+)Ensembl
GRCm38.p6 Ensembl1930,030,513 - 30,058,812 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,007,913 - 30,058,919 (+)Ensembl
GRCm38.p6 Ensembl1930,030,513 - 30,081,519 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,069,361 - 30,070,339 (+)Ensembl
GRCm38.p6 Ensembl1930,091,961 - 30,092,939 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1930,055,904 - 30,057,645 (+)Ensembl
GRCm38.p6 Ensembl1930,078,504 - 30,080,245 (+)Ensembl
RefSeq Acc Id: NM_001419329   ⟹   NP_001406258
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_001419330   ⟹   NP_001406259
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_001419331   ⟹   NP_001406260
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_001419332   ⟹   NP_001406261
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_001419333   ⟹   NP_001406262
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_001419334   ⟹   NP_001406263
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NM_144873   ⟹   NP_659122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
GRCm381930,030,513 - 30,093,726 (+)NCBI
MGSCv371930,105,003 - 30,168,216 (+)RGD
Celera1930,805,906 - 30,868,941 (+)RGD
cM Map19 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185060
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391930,007,920 - 30,071,126 (+)NCBI
RefSeq Acc Id: NP_659122   ⟸   NM_144873
- Peptide Label: isoform 1
- UniProtKB: Q8K1I5 (UniProtKB/Swiss-Prot),   Q8BY30 (UniProtKB/Swiss-Prot),   Q8BJP6 (UniProtKB/Swiss-Prot),   Q8BG56 (UniProtKB/Swiss-Prot),   Q7TMI3 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000025739   ⟸   ENSMUST00000025739
RefSeq Acc Id: NP_001406259   ⟸   NM_001419330
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001406258   ⟸   NM_001419329
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001406260   ⟸   NM_001419331
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001406262   ⟸   NM_001419333
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001406263   ⟸   NM_001419334
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001406261   ⟸   NM_001419332
- Peptide Label: isoform 5
Protein Domains
RING-type   Ubiquitin-like   UHRF1 tandem tudor   YDG

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TMI3-F1-model_v2 AlphaFold Q7TMI3 1-803 view protein structure

Promoters
RGD ID:13679242
Promoter ID:EPDNEW_M23770
Type:initiation region
Name:Uhrf2_1
Description:Mus musculus ubiquitin-like, containing PHD and RING finger domains2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381930,030,520 - 30,030,580EPDNEW
RGD ID:6830267
Promoter ID:MM_KWN:26813
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112552,   NM_144873,   OTTMUST00000042038,   OTTMUST00000042039,   UC008HEG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361930,104,651 - 30,105,151 (+)MPROMDB
RGD ID:6830504
Promoter ID:MM_KWN:26817
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1
Transcripts:OTTMUST00000042049
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361930,163,311 - 30,163,811 (+)MPROMDB
RGD ID:6830502
Promoter ID:MM_KWN:26818
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000074233
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361930,165,726 - 30,166,777 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923718 AgrOrtholog
Ensembl Genes ENSMUSG00000024817 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000025739 ENTREZGENE
  ENSMUST00000025739.14 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.30.1150 UniProtKB/Swiss-Prot
  2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PHD_UHRF2 UniProtKB/Swiss-Prot
  PUA-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING-HC_UHRF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRA-YDG_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRA_YDG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TTD_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_UHRF2_rpt1 UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubl_UHRF2 UniProtKB/Swiss-Prot
  UHRF1/2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/Swiss-Prot
  Znf_PHD UniProtKB/Swiss-Prot
  Znf_PHD-finger UniProtKB/Swiss-Prot
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:109113 UniProtKB/Swiss-Prot
MGD MGI:1923718 ENTREZGENE
NCBI Gene Uhrf2 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PHD UniProtKB/Swiss-Prot
  SAD_SRA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TTD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ubiquitin UniProtKB/Swiss-Prot
PhenoGen Uhrf2 PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot
  YDG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/Swiss-Prot
  ZF_PHD_2 UniProtKB/Swiss-Prot
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PHD UniProtKB/Swiss-Prot
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SRA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UBQ UniProtKB/Swiss-Prot
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57903 UniProtKB/Swiss-Prot
  SSF88697 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3T995_MOUSE UniProtKB/TrEMBL
  Q3TCM1_MOUSE UniProtKB/TrEMBL
  Q7TMI3 ENTREZGENE
  Q8BG56 ENTREZGENE
  Q8BJP6 ENTREZGENE
  Q8BY30 ENTREZGENE
  Q8K1I5 ENTREZGENE
  UHRF2_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BG56 UniProtKB/Swiss-Prot
  Q8BJP6 UniProtKB/Swiss-Prot
  Q8BY30 UniProtKB/Swiss-Prot
  Q8K1I5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Uhrf2  ubiquitin-like, containing PHD and RING finger domains 2  2310065A22Rik  RIKEN cDNA 2310065A22 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 2310065A22Rik  RIKEN cDNA 2310065A22 gene  Uhrf2  ubiquitin-like, containing PHD and RING finger domains 2  Symbol and/or name change 5135510 APPROVED