NLRC4 (NLR family CARD domain containing 4) - Rat Genome Database

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Gene: NLRC4 (NLR family CARD domain containing 4) Homo sapiens
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Symbol: NLRC4
Name: NLR family CARD domain containing 4
RGD ID: 1320383
HGNC Page HGNC:16412
Description: Enables several functions, including ATP binding activity; caspase binding activity; and protein homodimerization activity. Involved in positive regulation of apoptotic process; regulation of gene expression; and response to bacterium. Located in cytosol; intracellular membrane-bounded organelle; and plasma membrane. Implicated in familial cold autoinflammatory syndrome 4.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AIFEC; CARD, LRR, and NACHT-containing protein; CARD12; caspase recruitment domain family, member 12; caspase recruitment domain-containing protein 12; CED-4-like protein Clan; CLAN; CLAN1; CLANA; CLANB; CLANC; CLAND; CLR2.1; FCAS4; ice protease-activating factor; ICE-protease activating factor; IPAF; NLR family CARD domain-containing protein 4; NLR family, CARD domain containing 4; NOD-like receptor C4; nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 4
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,224,449 - 32,265,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,224,453 - 32,265,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37232,449,518 - 32,490,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36232,303,022 - 32,344,305 (-)NCBINCBI36Build 36hg18NCBI36
Build 34232,361,170 - 32,402,452NCBI
Celera232,294,338 - 32,335,591 (-)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef232,188,707 - 32,229,921 (-)NCBIHuRef
CHM1_1232,379,411 - 32,420,670 (-)NCBICHM1_1
T2T-CHM13v2.0232,272,955 - 32,314,278 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:16199547 and PMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:27203668 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25741868 and PMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25741868
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25741868 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:24033266 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:17576681 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:19763152 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25741868 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532 and PMID:34248956
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Syndrome of entercolitis and autoinflmmation caused by mutation of NLRC4 (SCAN4)ClinVarPMID:25217960 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:28492532 and PMID:33822359
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25217959 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25741868 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVarPMID:25217959 more ...
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Autoinflammation with infantile enterocolitisClinVar 
1 to 20 of 58 rows
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Original Reference(s)
NLRC4HumanCryopyrin-Associated Periodic Syndromes  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
NLRC4HumanEnterocolitis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25217960
NLRC4HumanHereditary Autoinflammatory Diseases  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25217959 and PMID:25217960
NLRC4HumanMacrophage Activation Syndrome  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25217959
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Original Reference(s)
NLRC4Humanfamilial cold autoinflammatory syndrome 4  ISSNlrc4 (Mus musculus)13592920OMIM:616115MouseDO 
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Original Reference(s)
NLRC4HumanAutoinflammation with Infantile Enterocolitis  IAGP 7240710 OMIM 
NLRC4Humanfamilial cold autoinflammatory syndrome 4  IAGP 7240710 OMIM 

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Original Reference(s)
NLRC4Human1,2-dimethylhydrazine decreases expressionISONlrc4 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of NLRC4 mRNACTDPMID:22206623
NLRC4Human1-naphthyl isothiocyanate increases expressionISONlrc4 (Rattus norvegicus)64804641-Naphthylisothiocyanate results in increased expression of NLRC4 mRNACTDPMID:30723492
NLRC4Human17beta-estradiol multiple interactionsEXP 6480464[Estradiol co-treated with TGFB1 protein] results in increased expression of NLRC4 mRNACTDPMID:30165855
NLRC4Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISONlrc4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of NLRC4 mRNACTDPMID:22298810
NLRC4Human4-hydroxynon-2-enal increases expressionISONlrc4 (Mus musculus)64804644-hydroxy-2-nonenal results in increased expression of NLRC4 mRNACTDPMID:19191707
NLRC4Humanacetamide increases expressionISONlrc4 (Rattus norvegicus)6480464acetamide results in increased expression of NLRC4 mRNACTDPMID:31881176
NLRC4Humanacrylamide decreases expressionISONlrc4 (Rattus norvegicus)6480464Acrylamide results in decreased expression of NLRC4 mRNACTDPMID:28959563
NLRC4Humanacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of NLRC4 mRNACTDPMID:32763439
NLRC4Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of NLRC4 geneCTDPMID:27153756
NLRC4HumanAflatoxin B2 alpha increases methylationEXP 6480464aflatoxin B2 results in increased methylation of NLRC4 intronCTDPMID:30157460
NLRC4Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of NLRC4 mRNACTDPMID:33167477
NLRC4Humanantirheumatic drug decreases expressionEXP 6480464Antirheumatic Agents results in decreased expression of NLRC4 mRNACTDPMID:24449571
NLRC4Humanaristolochic acid A increases expressionEXP 6480464aristolochic acid I results in increased expression of NLRC4 mRNACTDPMID:33212167
NLRC4Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of NLRC4 geneCTDPMID:25304211
NLRC4Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of NLRC4 geneCTDPMID:25304211
NLRC4Humanarsenous acid decreases expressionEXP 6480464Arsenic Trioxide results in decreased expression of NLRC4 proteinCTDPMID:35226250
NLRC4Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of NLRC4 intronCTDPMID:30157460
NLRC4Humanbenzo[e]pyrene increases methylationEXP 6480464benzo(e)pyrene results in increased methylation of NLRC4 intronCTDPMID:30157460
NLRC4Humanbisphenol A decreases expressionISONlrc4 (Rattus norvegicus)6480464bisphenol A results in decreased expression of NLRC4 mRNACTDPMID:30816183 more ...
NLRC4Humanbisphenol A decreases methylationEXP 6480464bisphenol A results in decreased methylation of NLRC4 geneCTDPMID:31601247

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Biological Process
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Original Reference(s)
NLRC4Humanactivation of innate immune response involved_inISSUniProtKB:Q3UP24150520179 UniProtGO_REF:0000024
NLRC4Humanactivation of innate immune response involved_inIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humanapoptotic process involved_inIEAUniProtKB-KW:KW-0053150520179 UniProtGO_REF:0000043
NLRC4Humandefense response to bacterium involved_inIDA 150520179 PMID:15107016HGNC-UCLPMID:15107016
NLRC4Humandefense response to bacterium involved_inIBAMGI:3036243 more ...150520179 GO_CentralGO_REF:0000033
NLRC4Humandefense response to bacterium involved_inIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humandetection of bacterium involved_inIDA 150520179 PMID:15107016HGNC-UCLPMID:15107016
NLRC4Humandetection of bacterium involved_inIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humandetection of bacterium involved_inIBAMGI:3036243 more ...150520179 GO_CentralGO_REF:0000033
NLRC4Humanicosanoid biosynthetic process involved_inNAS 150520179 PMID:22902502ComplexPortalPMID:22902502
NLRC4Humanimmune system process involved_inIEAUniProtKB-KW:KW-0391150520179 UniProtGO_REF:0000043
NLRC4Humaninflammatory response involved_inISSUniProtKB:Q3UP24150520179 UniProtGO_REF:0000024
NLRC4Humaninflammatory response acts_upstream_of_or_withinIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humaninflammatory response involved_inIEAUniProtKB-KW:KW-0395150520179 UniProtGO_REF:0000043
NLRC4Humaninnate immune response involved_inIEAUniProtKB-KW:KW-0399150520179 UniProtGO_REF:0000043
NLRC4Humanpattern recognition receptor signaling pathway involved_inNAS 150520179 PMID:21918512ComplexPortalPMID:21918512
NLRC4Humanpositive regulation of apoptotic process involved_inIDA 150520179 PMID:12646168UniProtPMID:12646168
NLRC4Humanpositive regulation of inflammatory response involved_inNAS 150520179 PMID:21918512ComplexPortalPMID:21918512
NLRC4Humanpositive regulation of interleukin-1 beta production involved_inIGIUniProtKB:P10749 and UniProtKB:P29466150520179 PMID:15882992HGNC-UCLPMID:15882992
NLRC4Humanpositive regulation of interleukin-1 beta production involved_inIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
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Cellular Component
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Original Reference(s)
NLRC4Humancanonical inflammasome complex part_ofNAS 150520179 PMID:25879286ComplexPortalPMID:25879286
NLRC4Humancanonical inflammasome complex part_ofIEAUniProtKB-KW:KW-1271150520179 UniProtGO_REF:0000043
NLRC4Humancanonical inflammasome complex part_ofIEAUniProtKB-SubCell:SL-0488150520179 UniProtGO_REF:0000044
NLRC4Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
NLRC4Humancytoplasm located_inNAS 150520179 PMID:24803432ComplexPortalPMID:24803432
NLRC4Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
NLRC4Humancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-6801415 and Reactome:R-HSA-844617
NLRC4Humancytosol located_inIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humancytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
NLRC4Humancytosol located_inIDA 150520179 HPAGO_REF:0000052
NLRC4Humancytosol located_inISSUniProtKB:Q3UP24150520179 UniProtGO_REF:0000024
NLRC4Humanintracellular membrane-bounded organelle located_inIDA 150520179 HPAGO_REF:0000052
NLRC4HumanIPAF inflammasome complex part_ofIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4HumanIPAF inflammasome complex part_ofISSUniProtKB:Q3UP24150520179 UniProtGO_REF:0000024
NLRC4Humanplasma membrane located_inIDA 150520179 HPAGO_REF:0000052
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Molecular Function
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Original Reference(s)
NLRC4HumanATP binding enablesIDA 150520179 PMID:15882992HGNC-UCLPMID:15882992
NLRC4HumanATP binding enablesIEAUniProtKB-KW:KW-0067150520179 UniProtGO_REF:0000043
NLRC4Humancaspase binding enablesIPIUniProtKB:P29466150520179 PMID:15882992ARUK-UCLPMID:15882992
NLRC4Humanendopeptidase activator activity enablesIGIUniProtKB:P10749 and UniProtKB:P29466150520179 PMID:15882992ARUK-UCLPMID:15882992
NLRC4Humanidentical protein binding enablesIPIUniProtKB:Q9NPP4150520179 PMID:11374873 more ...IntActPMID:11374873 more ...
NLRC4Humanidentical protein binding enablesIEAUniProtKB:Q3UP24 and ensembl:ENSMUSP00000059637150520179 EnsemblGO_REF:0000107
NLRC4Humanmagnesium ion binding enablesTAS 150520179 PMID:15882992HGNC-UCLPMID:15882992
NLRC4Humannucleotide binding enablesIEAUniProtKB-KW:KW-0547150520179 UniProtGO_REF:0000043
NLRC4Humanprotein binding enablesIPIUniProtKB:Q48824150520179 PMID:21918512IntActPMID:21918512
NLRC4Humanprotein binding enablesIPIUniProtKB:P29466150520179 PMID:11374873 more ...IntActPMID:11374873 more ...
NLRC4Humanprotein binding enablesIPIUniProtKB:O95999 more ...150520179 PMID:11472070UniProtPMID:11472070
NLRC4Humanprotein binding enablesIPIUniProtKB:P29466 more ...150520179 PMID:15107016HGNC-UCLPMID:15107016
NLRC4Humanprotein binding enablesIPIUniProtKB:P19525150520179 PMID:22801494UniProtPMID:22801494
NLRC4Humanprotein homodimerization activity enablesIDA 150520179 PMID:15107016HGNC-UCLPMID:15107016
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Imported Annotations - KEGG (archival)

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Original Reference(s)
NLRC4HumanNOD-like receptor signaling pathway  IEA 6907045 KEGGhsa:04621
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Original Reference(s)
NLRC4HumanAnemia  IAGP 8699517 HPOMIM:616050
NLRC4HumanArthralgia  IAGP 8699517 HPOMIM:616115
NLRC4HumanArthralgia  IAGP 8699517 HPOMIM:616050
NLRC4HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:616115
NLRC4HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:616050
NLRC4HumanDiffuse alveolar hemorrhage  IAGP 8699517 HPOMIM:616050
NLRC4HumanDisseminated intravascular coagulation  IAGP 8699517 HPOMIM:616050
NLRC4HumanElevated circulating C-reactive protein concentration  IAGP 8699517 HPOMIM:616050
NLRC4HumanEnterocolitis  IAGP 8699517 HPOMIM:616050
NLRC4HumanEpisodic vomiting  IAGP 8699517 HPOMIM:616050
NLRC4HumanFailure to thrive  IAGP 8699517 HPOMIM:616050
NLRC4HumanFatigue  IAGP 8699517 HPOMIM:616050
NLRC4HumanFeeding difficulties in infancy  IAGP 8699517 HPOMIM:616050
NLRC4HumanFever  IAGP 8699517 HPOMIM:616115
NLRC4HumanFever  IAGP 8699517 HPOMIM:616050
NLRC4HumanHypoalbuminemia  IAGP 8699517 HPOMIM:616050
NLRC4HumanHypofibrinogenemia  IAGP 8699517 HPOMIM:616050
NLRC4HumanIncreased circulating ferritin concentration  IAGP 8699517 HPOMIM:616050
NLRC4HumanInfantile onset  IAGP 8699517 HPOMIM:616115
NLRC4HumanMeningitis  IAGP 8699517 HPOMIM:616050
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Original Reference(s)
NLRC4HumanSpastic paraplegia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVarPMID:32581362
NLRC4HumanSpastic paraplegia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Spastic paraplegiaClinVar 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:11374873   PMID:11390368   PMID:11472070   PMID:12477932   PMID:12545166   PMID:12646168   PMID:12975309   PMID:14702039   PMID:15030775   PMID:15107016   PMID:15174051   PMID:15489334  
PMID:15528373   PMID:15580302   PMID:15882992   PMID:16817903   PMID:17418785   PMID:17620097   PMID:18453601   PMID:20085538   PMID:20349122   PMID:21873635   PMID:21918512   PMID:22227487  
PMID:22547706   PMID:22801494   PMID:22902502   PMID:23012363   PMID:23215645   PMID:23686814   PMID:24054992   PMID:24182552   PMID:24803432   PMID:25217960   PMID:25342284   PMID:25385754  
PMID:25811392   PMID:25879286   PMID:26121197   PMID:26258904   PMID:26269955   PMID:26362438   PMID:26972847   PMID:27175981   PMID:27203668   PMID:27706238   PMID:27708283   PMID:27750030  
PMID:27974463   PMID:28011505   PMID:28992059   PMID:29797527   PMID:30279182   PMID:30368901   PMID:30385506   PMID:30658261   PMID:30802690   PMID:30824190   PMID:31133717   PMID:31244842  
PMID:31511355   PMID:31597739   PMID:31623628   PMID:31751447   PMID:32397236   PMID:32531834   PMID:32802832   PMID:32833985   PMID:33846244   PMID:33848452   PMID:34099337   PMID:34349018  
PMID:34512673   PMID:35216164   PMID:35462504   PMID:35678562   PMID:36194479   PMID:36301367   PMID:36797819   PMID:36899084   PMID:36941318   PMID:36948192   PMID:37099347   PMID:37567492  
PMID:37586642   PMID:37846829   PMID:38453949   PMID:38571451   PMID:38652550   PMID:39425177  



NLRC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38232,224,449 - 32,265,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl232,224,453 - 32,265,732 (-)EnsemblGRCh38hg38GRCh38
GRCh37232,449,518 - 32,490,812 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36232,303,022 - 32,344,305 (-)NCBINCBI36Build 36hg18NCBI36
Build 34232,361,170 - 32,402,452NCBI
Celera232,294,338 - 32,335,591 (-)NCBICelera
Cytogenetic Map2p22.3NCBI
HuRef232,188,707 - 32,229,921 (-)NCBIHuRef
CHM1_1232,379,411 - 32,420,670 (-)NCBICHM1_1
T2T-CHM13v2.0232,272,955 - 32,314,278 (-)NCBIT2T-CHM13v2.0
Nlrc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391774,733,254 - 74,766,140 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1774,732,433 - 74,766,137 (-)EnsemblGRCm39 Ensembl
GRCm381774,426,255 - 74,459,144 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1774,425,438 - 74,459,142 (-)EnsemblGRCm38mm10GRCm38
MGSCv371774,825,635 - 74,858,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361774,331,277 - 74,364,090 (-)NCBIMGSCv36mm8
Celera1778,730,040 - 78,763,171 (-)NCBICelera
Cytogenetic Map17E2NCBI
cM Map1745.64NCBI
Nlrc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8626,743,658 - 26,771,783 (+)NCBIGRCr8
mRatBN7.2620,991,785 - 21,018,254 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl620,995,266 - 21,018,248 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx621,326,076 - 21,349,081 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0621,641,928 - 21,664,923 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0621,122,373 - 21,145,374 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0622,167,874 - 22,194,755 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl622,167,919 - 22,194,250 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0632,058,459 - 32,081,799 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4620,934,595 - 20,953,654 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1620,933,896 - 20,956,415 (+)NCBI
Celera620,554,800 - 20,577,780 (+)NCBICelera
Cytogenetic Map6q13NCBI
Nlrc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955441570,880 - 603,128 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955441570,853 - 607,529 (-)NCBIChiLan1.0ChiLan1.0
NLRC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21294,225,360 - 94,269,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A94,229,345 - 94,273,056 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A32,241,782 - 32,284,041 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A32,954,185 - 32,996,465 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A32,954,185 - 32,996,465 (-)Ensemblpanpan1.1panPan2
NLRC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ROS_Cfam_1.01726,056,805 - 26,082,575 (-)NCBIROS_Cfam_1.0
UU_Cfam_GSD_1.01725,525,532 - 25,553,925 (-)NCBIUU_Cfam_GSD_1.0
Nlrc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629269,606,157 - 69,649,699 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364931,206,374 - 1,237,412 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364931,189,940 - 1,233,408 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLRC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13107,358,117 - 107,389,557 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23114,568,336 - 114,571,717 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NLRC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11475,229,262 - 75,273,336 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1475,242,274 - 75,273,312 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604536,801,347 - 36,842,252 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nlrc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473813,836,717 - 13,873,783 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473813,836,678 - 13,863,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in NLRC4
740 total Variants

1 to 10 of 873 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001199138.2(NLRC4):c.862C>G (p.Arg288Gly) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001853665]|not provided [RCV000521468] Chr2:32251002 [GRCh38]
Chr2:32476071 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1999C>T (p.Arg667Trp) single nucleotide variant not provided [RCV000523688] Chr2:32249865 [GRCh38]
Chr2:32474934 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1776C>T (p.Pro592=) single nucleotide variant Autoinflammatory syndrome [RCV002264295]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001394564] Chr2:32250088 [GRCh38]
Chr2:32475157 [GRCh37]
Chr2:2p22.3
likely benign
NM_001199138.2(NLRC4):c.2785G>T (p.Ala929Ser) single nucleotide variant Autoinflammatory syndrome [RCV002263807]|NLRC4-related disorder [RCV003925705]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000546974]|not provided [RCV002263806]|not specified [RCV001821634] Chr2:32224763 [GRCh38]
Chr2:32449832 [GRCh37]
Chr2:2p22.3
benign
NM_001199138.2(NLRC4):c.1022T>C (p.Val341Ala) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000144517]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001857479]|Syndrome of entercolitis and autoinflmmation caused by mutation of NLRC4 (SCAN4) [RCV000132764]|not provided [RCV000434682] Chr2:32250842 [GRCh38]
Chr2:32475911 [GRCh37]
Chr2:2p22.3
pathogenic
GRCh38/hg38 2p25.3-16.1(chr2:66097-55570637)x3 copy number gain See cases [RCV000052933] Chr2:66097..55570637 [GRCh38]
Chr2:66097..55797773 [GRCh37]
Chr2:56097..55651277 [NCBI36]
Chr2:2p25.3-16.1
pathogenic
GRCh38/hg38 2p23.1-22.3(chr2:31370181-32512769)x1 copy number loss See cases [RCV000053981] Chr2:31370181..32512769 [GRCh38]
Chr2:31593047..32737836 [GRCh37]
Chr2:31446551..32591340 [NCBI36]
Chr2:2p23.1-22.3
pathogenic
NM_001199138.1(NLRC4):c.1912G>A (p.Glu638Lys) single nucleotide variant Malignant melanoma [RCV000065568] Chr2:32249952 [GRCh38]
Chr2:32475021 [GRCh37]
Chr2:32328525 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.1518G>A (p.Met506Ile) single nucleotide variant Malignant melanoma [RCV000065569] Chr2:32250346 [GRCh38]
Chr2:32475415 [GRCh37]
Chr2:32328919 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.2249G>A (p.Arg750Gln) single nucleotide variant Malignant melanoma [RCV000060559] Chr2:32249615 [GRCh38]
Chr2:32474684 [GRCh37]
Chr2:32328188 [NCBI36]
Chr2:2p22.3
not provided
1 to 10 of 873 rows

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:58
Interacting mature miRNAs:59
Transcripts:ENST00000342905, ENST00000360906, ENST00000402280, ENST00000404025
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597189592GWAS1285666_Hsex hormone-binding globulin measurement QTL GWAS1285666 (human)1e-13sex hormone-binding globulin measurement23225328532253286Human
597213178GWAS1309252_Hinterleukin 18 measurement QTL GWAS1309252 (human)1e-15interleukin 18 measurement23226408932264090Human
596974295GWAS1093814_Hinterleukin 18 measurement QTL GWAS1093814 (human)1e-13interleukin 18 measurement23226478232264783Human
597185437GWAS1281511_Hetiocholanolone glucuronide measurement QTL GWAS1281511 (human)1e-12etiocholanolone glucuronide measurement23225328532253286Human
597250396GWAS1346470_Hinterleukin 18 measurement QTL GWAS1346470 (human)1e-13interleukin 18 measurement23226478232264783Human
597216624GWAS1312698_Hinterleukin 18 measurement QTL GWAS1312698 (human)1e-101interleukin 18 measurement23226478232264783Human
597501143GWAS1597217_H11beta-hydroxyandrosterone glucuronide measurement QTL GWAS1597217 (human)3e-1111beta-hydroxyandrosterone glucuronide measurement23223527932235280Human
597022399GWAS1118473_Hinterleukin 18 measurement QTL GWAS1118473 (human)2e-22interleukin 18 measurement23226478232264783Human
597096666GWAS1192740_Hsex hormone-binding globulin measurement QTL GWAS1192740 (human)1e-14sex hormone-binding globulin measurement23225328532253286Human
597140987GWAS1237061_Hinterleukin 18 measurement QTL GWAS1237061 (human)3e-28interleukin 18 measurement23226478232264783Human

1 to 10 of 13 rows
RH103483  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37232,476,696 - 32,476,849UniSTSGRCh37
Build 36232,330,200 - 32,330,353RGDNCBI36
Celera232,321,493 - 32,321,646RGD
Cytogenetic Map2p22-p21UniSTS
HuRef232,215,808 - 32,215,961UniSTS
GeneMap99-GB4 RH Map2103.33UniSTS
RH119418  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37232,460,384 - 32,460,705UniSTSGRCh37
Build 36232,313,888 - 32,314,209RGDNCBI36
Celera232,305,182 - 32,305,503RGD
Cytogenetic Map2p22-p21UniSTS
HuRef232,199,487 - 32,199,808UniSTS
TNG Radiation Hybrid Map223408.0UniSTS
CARD12_8077  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37232,449,333 - 32,449,820UniSTSGRCh37
Build 36232,302,837 - 32,303,324RGDNCBI36
Celera232,294,153 - 32,294,640RGD
HuRef232,188,522 - 32,189,009UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2405 2787 2252 4915 1715 2283 4 622 1915 459 2245 7203 6421 27 3689 1 824 1711 1557 172 1


1 to 27 of 27 rows
RefSeq Transcripts NG_041780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001199139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017004619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047445356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054343247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001738872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF376061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK314762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL121653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL389934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW337918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY027787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY027788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY027789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY027790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY032589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY035391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN998613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 27 of 27 rows

Ensembl Acc Id: ENST00000342905   ⟹   ENSP00000339666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,224,455 - 32,265,732 (-)Ensembl
Ensembl Acc Id: ENST00000360906   ⟹   ENSP00000354159
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,224,453 - 32,265,732 (-)Ensembl
Ensembl Acc Id: ENST00000402280   ⟹   ENSP00000385428
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,224,453 - 32,264,886 (-)Ensembl
Ensembl Acc Id: ENST00000404025   ⟹   ENSP00000385090
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,224,469 - 32,264,865 (-)Ensembl
Ensembl Acc Id: ENST00000652197   ⟹   ENSP00000498301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl232,224,453 - 32,258,182 (-)Ensembl
RefSeq Acc Id: NM_001199138   ⟹   NP_001186067
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,224,453 - 32,264,886 (-)NCBI
GRCh37232,449,518 - 32,490,812 (-)ENTREZGENE
HuRef232,188,707 - 32,229,921 (-)ENTREZGENE
CHM1_1232,379,411 - 32,419,807 (-)NCBI
T2T-CHM13v2.0232,272,959 - 32,313,421 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001199139   ⟹   NP_001186068
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,224,449 - 32,265,620 (-)NCBI
GRCh37232,449,518 - 32,490,812 (-)ENTREZGENE
HuRef232,188,707 - 32,229,921 (-)ENTREZGENE
CHM1_1232,379,411 - 32,420,547 (-)NCBI
T2T-CHM13v2.0232,272,955 - 32,314,155 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001302504   ⟹   NP_001289433
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,224,449 - 32,265,743 (-)NCBI
CHM1_1232,379,411 - 32,420,670 (-)NCBI
T2T-CHM13v2.0232,272,955 - 32,314,278 (-)NCBI
Sequence:
RefSeq Acc Id: NM_021209   ⟹   NP_067032
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,224,449 - 32,265,743 (-)NCBI
GRCh37232,449,518 - 32,490,812 (-)ENTREZGENE
Build 36232,303,022 - 32,344,305 (-)NCBI Archive
HuRef232,188,707 - 32,229,921 (-)ENTREZGENE
CHM1_1232,379,411 - 32,420,670 (-)NCBI
T2T-CHM13v2.0232,272,955 - 32,314,278 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047445356   ⟹   XP_047301312
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,241,033 - 32,264,886 (-)NCBI
RefSeq Acc Id: XM_054343247   ⟹   XP_054199222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0232,289,543 - 32,313,421 (-)NCBI
1 to 30 of 32 rows
Protein RefSeqs NP_001186067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001186068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289433 (Get FASTA)   NCBI Sequence Viewer  
  NP_067032 (Get FASTA)   NCBI Sequence Viewer  
  XP_047301312 (Get FASTA)   NCBI Sequence Viewer  
  XP_054199222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31555 (Get FASTA)   NCBI Sequence Viewer  
  AAK14776 (Get FASTA)   NCBI Sequence Viewer  
  AAK14777 (Get FASTA)   NCBI Sequence Viewer  
  AAK14778 (Get FASTA)   NCBI Sequence Viewer  
  AAK14779 (Get FASTA)   NCBI Sequence Viewer  
  AAK38730 (Get FASTA)   NCBI Sequence Viewer  
  AAK53443 (Get FASTA)   NCBI Sequence Viewer  
  AAK59843 (Get FASTA)   NCBI Sequence Viewer  
  AAQ88519 (Get FASTA)   NCBI Sequence Viewer  
  BAF85362 (Get FASTA)   NCBI Sequence Viewer  
  BAG37300 (Get FASTA)   NCBI Sequence Viewer  
  BAG53062 (Get FASTA)   NCBI Sequence Viewer  
  CAB97523 (Get FASTA)   NCBI Sequence Viewer  
  EAX00451 (Get FASTA)   NCBI Sequence Viewer  
  EAX00452 (Get FASTA)   NCBI Sequence Viewer  
  EAX00453 (Get FASTA)   NCBI Sequence Viewer  
  EAX00454 (Get FASTA)   NCBI Sequence Viewer  
  EAX00455 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000339666
  ENSP00000339666.6
  ENSP00000354159
  ENSP00000354159.5
  ENSP00000385090
  ENSP00000385428
1 to 30 of 32 rows
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: NP_067032   ⟸   NM_021209
- Peptide Label: isoform a
- UniProtKB: Q96J82 (UniProtKB/Swiss-Prot),   Q96J81 (UniProtKB/Swiss-Prot),   D6W580 (UniProtKB/Swiss-Prot),   B3KTF0 (UniProtKB/Swiss-Prot),   B2RBQ3 (UniProtKB/Swiss-Prot),   A8K9F8 (UniProtKB/Swiss-Prot),   Q96J83 (UniProtKB/Swiss-Prot),   Q9NPP4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001186068   ⟸   NM_001199139
- Peptide Label: isoform a
- UniProtKB: Q96J82 (UniProtKB/Swiss-Prot),   Q96J81 (UniProtKB/Swiss-Prot),   D6W580 (UniProtKB/Swiss-Prot),   B3KTF0 (UniProtKB/Swiss-Prot),   B2RBQ3 (UniProtKB/Swiss-Prot),   A8K9F8 (UniProtKB/Swiss-Prot),   Q96J83 (UniProtKB/Swiss-Prot),   Q9NPP4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001186067   ⟸   NM_001199138
- Peptide Label: isoform a
- UniProtKB: Q96J82 (UniProtKB/Swiss-Prot),   Q96J81 (UniProtKB/Swiss-Prot),   D6W580 (UniProtKB/Swiss-Prot),   B3KTF0 (UniProtKB/Swiss-Prot),   B2RBQ3 (UniProtKB/Swiss-Prot),   A8K9F8 (UniProtKB/Swiss-Prot),   Q96J83 (UniProtKB/Swiss-Prot),   Q9NPP4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289433   ⟸   NM_001302504
- Peptide Label: isoform b
- UniProtKB: Q9NPP4 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000354159   ⟸   ENST00000360906
CARD   NACHT

Name Modeler Protein Id AA Range Protein Structure
AF-Q9NPP4-F1-model_v2 AlphaFold Q9NPP4 1-1024 view protein structure

RGD ID:6860058
Promoter ID:EPDNEW_H3194
Type:initiation region
Name:NLRC4_1
Description:NLR family CARD domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3195  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,264,865 - 32,264,925EPDNEW
RGD ID:6860060
Promoter ID:EPDNEW_H3195
Type:initiation region
Name:NLRC4_2
Description:NLR family CARD domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H3194  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38232,265,815 - 32,265,875EPDNEW
RGD ID:6797179
Promoter ID:HG_KWN:32115
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000401562,   UC002ROI.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36232,343,096 - 32,343,596 (-)MPROMDB


1 to 40 of 57 rows
Database
Acc Id
Source(s)
COSMIC NLRC4 COSMIC
Ensembl Genes ENSG00000091106 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000342905 ENTREZGENE
  ENST00000342905.10 UniProtKB/Swiss-Prot
  ENST00000360906 ENTREZGENE
  ENST00000360906.9 UniProtKB/Swiss-Prot
  ENST00000402280 ENTREZGENE
  ENST00000402280.6 UniProtKB/Swiss-Prot
  ENST00000404025 ENTREZGENE
Gene3D-CATH 1.10.1900.50 UniProtKB/Swiss-Prot
  1.10.533.10 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
GTEx ENSG00000091106 GTEx
HGNC ID HGNC:16412 ENTREZGENE
Human Proteome Map NLRC4 Human Proteome Map
InterPro CARD UniProtKB/Swiss-Prot
  DEATH-like_dom_sf UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
  NACHT_NTPase UniProtKB/Swiss-Prot
  NLRC4 UniProtKB/Swiss-Prot
  Nlrc4-like_WHD UniProtKB/Swiss-Prot
  NLRC4_HD UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report hsa:58484 UniProtKB/Swiss-Prot
NCBI Gene 58484 ENTREZGENE
OMIM 606831 OMIM
PANTHER NLR FAMILY CARD DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
  PTHR47688 UniProtKB/Swiss-Prot
Pfam CARD UniProtKB/Swiss-Prot
  NACHT UniProtKB/Swiss-Prot
  Nlrc4-like_WHD UniProtKB/Swiss-Prot
  NLRC4_HD UniProtKB/Swiss-Prot
PharmGKB PA162397671 PharmGKB
PROSITE CARD UniProtKB/Swiss-Prot
  NACHT UniProtKB/Swiss-Prot
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot
  SSF47986 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A494BZZ1_HUMAN UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 NLRC4  NLR family CARD domain containing 4  NLRC4  NLR family, CARD domain containing 4  Symbol and/or name change 5135510 APPROVED