Gskip (GSK3B interacting protein) - Rat Genome Database

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Gene: Gskip (GSK3B interacting protein) Mus musculus
Analyze
Symbol: Gskip
Name: GSK3B interacting protein
RGD ID: 1318257
MGI Page MGI
Description: Predicted to enable protein kinase A regulatory subunit binding activity; protein kinase binding activity; and protein kinase inhibitor activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to oxidative stress and positive regulation of canonical Wnt signaling pathway. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including gut; liver; metanephros; spleen; and testis. Orthologous to human GSKIP (GSK3B interacting protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4933433P14Rik; FLJ20789; GSK3-beta interaction protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912105,651,611 - 105,669,317 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12105,651,088 - 105,669,282 (+)EnsemblGRCm39 Ensembl
GRCm3812105,685,352 - 105,703,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12105,684,829 - 105,703,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712106,923,562 - 106,941,268 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612106,086,491 - 106,104,097 (+)NCBIMGSCv36mm8
Celera12106,919,875 - 106,937,566 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1255.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
nucleus  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16981698  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:26582204   PMID:32325033   PMID:32828530   PMID:34748402  


Genomics

Comparative Map Data
Gskip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912105,651,611 - 105,669,317 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12105,651,088 - 105,669,282 (+)EnsemblGRCm39 Ensembl
GRCm3812105,685,352 - 105,703,058 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12105,684,829 - 105,703,023 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712106,923,562 - 106,941,268 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612106,086,491 - 106,104,097 (+)NCBIMGSCv36mm8
Celera12106,919,875 - 106,937,566 (+)NCBICelera
Cytogenetic Map12ENCBI
cM Map1255.92NCBI
GSKIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381496,363,526 - 96,387,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1496,363,452 - 96,387,288 (+)EnsemblGRCh38hg38GRCh38
GRCh371496,829,863 - 96,853,627 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361495,915,775 - 95,923,321 (+)NCBINCBI36Build 36hg18NCBI36
Build 341495,899,622 - 95,922,362NCBI
Celera1476,901,748 - 76,909,294 (+)NCBICelera
Cytogenetic Map14q32.2NCBI
HuRef1477,014,876 - 77,038,713 (+)NCBIHuRef
CHM1_11496,768,634 - 96,792,467 (+)NCBICHM1_1
T2T-CHM13v2.01490,595,122 - 90,618,884 (+)NCBIT2T-CHM13v2.0
Gskip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86130,357,241 - 130,373,221 (+)NCBIGRCr8
mRatBN7.26124,586,087 - 124,609,106 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6124,586,070 - 124,609,100 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6124,713,904 - 124,729,726 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06125,009,170 - 125,024,993 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06124,370,337 - 124,386,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06129,512,950 - 129,536,320 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6129,519,709 - 129,536,221 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06138,706,202 - 138,729,236 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46129,842,160 - 129,858,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16129,845,906 - 129,861,859 (+)NCBI
Celera6122,159,593 - 122,175,547 (+)NCBICelera
Cytogenetic Map6q32NCBI
Gskip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543818,153,564 - 18,177,899 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543818,153,564 - 18,174,980 (+)NCBIChiLan1.0ChiLan1.0
GSKIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21597,523,394 - 97,547,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11496,739,898 - 96,763,980 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01476,993,055 - 77,017,142 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11496,331,789 - 96,339,378 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1496,329,936 - 96,339,378 (+)Ensemblpanpan1.1panPan2
GSKIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1865,110,659 - 65,131,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl865,111,414 - 65,129,622 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha864,626,310 - 64,647,821 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0865,382,175 - 65,403,816 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl865,383,060 - 65,450,126 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1865,054,862 - 65,076,654 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0865,116,291 - 65,137,874 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0865,439,899 - 65,461,533 (+)NCBIUU_Cfam_GSD_1.0
Gskip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086409,406,837 - 9,424,882 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936604657,400 - 675,923 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936604657,602 - 675,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSKIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7117,586,764 - 117,607,564 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17117,586,742 - 117,607,575 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27124,844,708 - 124,865,661 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GSKIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12474,246,221 - 74,270,608 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2474,246,255 - 74,271,765 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605361,397,502 - 61,422,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gskip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,002,240 - 7,015,194 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247347,003,240 - 7,015,215 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gskip
555 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:702
Count of miRNA genes:379
Interacting mature miRNAs:431
Transcripts:ENSMUST00000051934
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
25823169Hrsq8_mhost response to SARS QTL 8, log titer (mouse)1281696245108495368Mouse
13524846Ppiq11_mprepulse inhibition QTL 11 (mouse)1282666396116666396Mouse
1301492Dbsty3_mdiabesity 3 (mouse)Not determined1283532075117532224Mouse
1301879Insq10_minsulin QTL 10 (mouse)Not determined1283532075117532224Mouse
1300883Ath21_matherosclerosis 21 (mouse)Not determined1285961579119961683Mouse
10412156Nociq3_mnociceptive sensitivity inflammatory QTL 3 (mouse)Not determined1286396075114831653Mouse
4142007Chlq17_mcirculating hormone level QTL 17 (mouse)Not determined1288052874120092757Mouse
1300545Lifespan3_mlife span 3 (mouse)Not determined1288052874120092757Mouse
1301308Prdt4_mprion disease incubation time 4 (mouse)Not determined1288308354120092757Mouse
5491194Mobq3_mmultigenic obesity QTL 3 (mouse)Not determined1289664071120092757Mouse
1301836Heal5_mwound healing/regeneration 5 (mouse)Not determined1289939031120092757Mouse
1301922Bbaa6_mB.burgdorferi-associated arthritis 6 (mouse)Not determined1290308268120092757Mouse
12910790Pwgrq7_mpre-weaning growth rate QTL 7 (mouse)1290937367108645308Mouse
10402491Dipa4_mdrug induced psychomotor activation 4 (mouse)Not determined1291222515120092757Mouse
10412192Bbaa27_mB.burgdorferi-associated arthritis 27 (mouse)Not determined1291254220107308393Mouse
12910532Nrq10a_mnoise-induced hearing loss resistant QTL 10a (mouse)1292750025120092757Mouse
12910533Nrq10_mnoise-induced hearing loss resistant QTL 10 (mouse)1292750025120092757Mouse
1357463Vtbt14_mvertebral trabecular bone trait 14 (mouse)Not determined1292936097120092757Mouse
1300973Abmm_mantibody mediated myocarditis (mouse)Not determined1293264461120092757Mouse
11039526Ccc1_mcolitis susceptibility in the Collaborative Cross 1 (mouse)1293528334111028223Mouse
1302177Dps2_mdelta power in slow-wave sleep 2 (mouse)Not determined1294146064120092757Mouse
1302138Im6_mimmunoregulatory 6 (mouse)Not determined1296860337120092757Mouse
1301269Sluc12_msusceptibility to lung cancer 12 (mouse)Not determined1296860337120092757Mouse
10412075Nils1_mneointima lesion size 1 (mouse)Not determined12102024665120092757Mouse
25394546Skmw76_mskeletal muscle weight 76, TA (mouse)12102593095106941888Mouse

Markers in Region
UniSTS:236940  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3812105,689,826 - 105,689,954UniSTSGRCm38
MGSCv3712106,928,036 - 106,928,164UniSTSGRCm37
Celera12106,924,348 - 106,924,476UniSTS
Cytogenetic Map12EUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000051934   ⟹   ENSMUSP00000057939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12105,651,643 - 105,669,282 (+)Ensembl
GRCm38.p6 Ensembl12105,685,384 - 105,703,023 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222284   ⟹   ENSMUSP00000152722
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12105,651,088 - 105,665,410 (+)Ensembl
GRCm38.p6 Ensembl12105,684,829 - 105,699,151 (+)Ensembl
RefSeq Acc Id: ENSMUST00000222841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl12105,651,660 - 105,656,479 (+)Ensembl
GRCm38.p6 Ensembl12105,685,401 - 105,690,220 (+)Ensembl
RefSeq Acc Id: NM_178613   ⟹   NP_848728
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3912105,651,611 - 105,669,317 (+)NCBI
GRCm3812105,685,352 - 105,703,058 (+)ENTREZGENE
MGSCv3712106,923,562 - 106,941,268 (+)RGD
Celera12106,919,875 - 106,937,566 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_848728   ⟸   NM_178613
- UniProtKB: Q8K2G9 (UniProtKB/Swiss-Prot),   Q8CDW3 (UniProtKB/Swiss-Prot),   Q8BGR8 (UniProtKB/Swiss-Prot),   Q3TBR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000057939   ⟸   ENSMUST00000051934
RefSeq Acc Id: ENSMUSP00000152722   ⟸   ENSMUST00000222284
Protein Domains
GSKIP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGR8-F1-model_v2 AlphaFold Q8BGR8 1-139 view protein structure

Promoters
RGD ID:8679174
Promoter ID:EPDNEW_M17617
Type:multiple initiation site
Name:Gskip_1
Description:Mus musculus GSK3B interacting protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3812105,685,418 - 105,685,478EPDNEW
RGD ID:6822585
Promoter ID:MM_KWN:12641
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_029654,   NM_178613,   UC007OYQ.1,   UC007OYR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3612106,922,261 - 106,923,687 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914037 AgrOrtholog
Ensembl Genes ENSMUSG00000044715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000051934 ENTREZGENE
  ENSMUST00000051934.7 UniProtKB/Swiss-Prot
  ENSMUST00000222284.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GSKIP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GSKIP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GSKIP_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66787 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1914037 ENTREZGENE
NCBI Gene 66787 ENTREZGENE
PANTHER GSK3B-INTERACTING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12490 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF727 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gskip PhenoGen
Superfamily-SCOP SSF103107 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VNZ5_MOUSE UniProtKB/TrEMBL
  GSKIP_MOUSE UniProtKB/Swiss-Prot
  Q3TBR1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGR8 ENTREZGENE
  Q8CDD7_MOUSE UniProtKB/TrEMBL
  Q8CDW3 ENTREZGENE
  Q8K2G9 ENTREZGENE
UniProt Secondary Q8CDW3 UniProtKB/Swiss-Prot
  Q8K2G9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-11-27 Gskip  GSK3B interacting protein  4933433P14Rik  RIKEN cDNA 4933433P14 gene  Symbol and/or name change 5135510 APPROVED