BSCL2 (BSCL2 lipid droplet biogenesis associated, seipin) - Rat Genome Database

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Gene: BSCL2 (BSCL2 lipid droplet biogenesis associated, seipin) Homo sapiens
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Symbol: BSCL2
Name: BSCL2 lipid droplet biogenesis associated, seipin
RGD ID: 1317732
HGNC Page HGNC:15832
Description: Enables phospholipid binding activity. Involved in lipid droplet formation. Located in endoplasmic reticulum membrane and lipid droplet. Implicated in autosomal dominant distal hereditary motor neuronopathy 13; congenital generalized lipodystrophy type 2; hereditary spastic paraplegia; hereditary spastic paraplegia 17; and lipodystrophy.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Berardinelli-Seip congenital lipodystrophy 2 (seipin); Bernardinelli-Seip congenital lipodystrophy 2 (seipin); bernardinelli-Seip congenital lipodystrophy type 2 protein; BSCL2, seipin lipid droplet biogenesis associated; FLJ16651; GNG3LG; HMN5; HMN5C; HMND13; MGC4694; PELD; seipin; spastic paraplegia 17 (Silver syndrome); SPG17
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,690,262 - 62,709,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,689,289 - 62,709,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,457,734 - 62,477,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,214,323 - 62,231,395 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,214,322 - 62,231,395NCBI
Celera1159,786,117 - 59,805,403 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,786,515 - 58,805,891 (-)NCBIHuRef
CHM1_11162,340,845 - 62,360,176 (-)NCBICHM1_1
T2T-CHM13v2.01162,679,681 - 62,698,954 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Original Reference(s)
BSCL2Humanazoospermia  ISORGD:130813511085488 RGD 
BSCL2Humanhereditary spastic paraplegia  IAGP 1600602SPG17, OMIM:270685, DNA:point mutation:exon:N88SRGD 
BSCL2HumanInsulin Resistance  ISORGD:130813511085488 RGD 
BSCL2Humanlipodystrophy  IAGP 1600601CGL2, OMIM:269700, DNA:frameshift:exonRGD 
BSCL2Humantype 2 diabetes mellitus no_associationISORGD:13081351600600 RGD 
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Original Reference(s)
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:85964768554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:11479539|PMID:14981520|PMID:17387721|PMID:17486577|PMID:20806400|PMID:21957196|PMID:24604904|PMID:25487175|PMID:25741868|PMID:25832430|PMID:26467025|PMID:26815532|PMID:26989944|PMID:27027447|PMID:27738760|PMID:27862672|PMID:28362824|PMID:28492532|PMID:31372974|PMID:31475473|PMID:34232518
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:104082468554872ClinVar Annotator: match by term: SPINAL MUSCULAR ATROPHY, DISTAL, HARDING TYPE VCClinVarPMID:18690553|PMID:25741868|PMID:28492532|PMID:31824185|PMID:35351089
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:147139508554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:14981520|PMID:23989774|PMID:25741868|PMID:26467025|PMID:26815532|PMID:28492532|PMID:31369919
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:11546074|RGD:126737167|RGD:12846247|RGD:14393512|RGD:401913676|RGD:86591078554872ClinVar Annotator: match by term: DHMN VC | ClinVar Annotator: match by term: Neuronopathy, distal more ...ClinVarPMID:25741868|PMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:127416028554872ClinVar Annotator: match by term: DHMN VCClinVarPMID:11479539|PMID:14557463|PMID:19226263|PMID:19762912|PMID:21126715|PMID:23564749|PMID:25741868|PMID:26467025|PMID:27612026|PMID:27632409|PMID:28492532|PMID:28916377|PMID:29478747|PMID:30903322|PMID:31770241|PMID:32792356
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:11547527|RGD:14734817|RGD:155643963|RGD:1556440718554872ClinVar Annotator: match by term: DHMN VC | ClinVar Annotator: match by term: Neuronopathy, distal more ...ClinVarPMID:25741868
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:134952498554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:17387721|PMID:17486577|PMID:20806400|PMID:21957196|PMID:23142943|PMID:24451228|PMID:24604904|PMID:25487175|PMID:26815532|PMID:27549087|PMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:85964738554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:11479539|PMID:12362029|PMID:19226263|PMID:20301391|PMID:25741868|PMID:26072926
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:115231078554872ClinVar Annotator: match by term: DHMN VCClinVarPMID:24451228|PMID:25741868|PMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:268847028554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:23292937|PMID:25741868|PMID:28492532|PMID:32397312
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 13  IAGPRGD:85964758554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5CClinVarPMID:14981520|PMID:15126564|PMID:15732094|PMID:16427281|PMID:16574104|PMID:1674639|PMID:17387721|PMID:18585921|PMID:18612770|PMID:18790819|PMID:19396477|PMID:20598714|PMID:21750110|PMID:21957196|PMID:22045697|PMID:22474068|PMID:23553728|PMID:24345054|PMID:25219579|PMID:25454168|PMID:25741868|PMID:26467025|PMID:27738760|PMID:28492532|PMID:29269637|PMID:32320108|PMID:34085946|PMID:34942918|PMID:5964029
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:11601875|RGD:116054768554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:25741868
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:11523722|RGD:11598703|RGD:11602644|RGD:11606008|RGD:11613149|RGD:13538275|RGD:28908039|RGD:95867928554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:10768053|RGD:11523512|RGD:11523994|RGD:11543772|RGD:11546074|RGD:13526417|RGD:13810364|RGD:28908043|RGD:86591078554872ClinVar Annotator: match by term: DHMN VA | ClinVar Annotator: match by term: Neuronopathy, distal more ...ClinVarPMID:25741868|PMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:86574988554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:18690553|PMID:23963299|PMID:25588603|PMID:25741868|PMID:26467025|PMID:28492532|PMID:29525178|PMID:31824185|PMID:32397312|PMID:35351089
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:11608122|RGD:11620364|RGD:289069028554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:26467025|PMID:28492532
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:85964768554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:11479539|PMID:14981520|PMID:17387721|PMID:17486577|PMID:20806400|PMID:21957196|PMID:24604904|PMID:25487175|PMID:25741868|PMID:25832430|PMID:26467025|PMID:26815532|PMID:26989944|PMID:27027447|PMID:27738760|PMID:27862672|PMID:28362824|PMID:28492532|PMID:31372974|PMID:31475473|PMID:34232518
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:116049498554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:26467025
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:146881118554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:14557463|PMID:19226263|PMID:23989774
BSCL2Humanautosomal dominant distal hereditary motor neuronopathy 5  IAGPRGD:116207458554872ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 5AClinVarPMID:25741868|PMID:26467025|PMID:27144933|PMID:28492532
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Original Reference(s)
BSCL2HumanAnimal Disease Models  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25462787
BSCL2HumanAsthenozoospermia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26181198
BSCL2Humancongenital generalized lipodystrophy  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
BSCL2HumanDelayed Puberty  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25462787
BSCL2Humanhereditary spastic paraplegia 17  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
BSCL2Humanlipodystrophy  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:25462787
BSCL2Humanoligospermia  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:26181198
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Original Reference(s)
BSCL2Humancongenital generalized lipodystrophy type 2  ISSRGD:131773313592920OMIM:269700MouseDO 
BSCL2Humanmale infertility  ISSRGD:131773313592920 MouseDO 

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Original Reference(s)
BSCL2Human(+)-schisandrin B multiple interactionsISORGD:13177336480464[schizandrin B results in decreased activity of ATR protein] inhibits the reaction [Aphidicolin results in more ...CTDPMID:22003191
BSCL2Human(+)-schisandrin B multiple interactionsISORGD:13081356480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of BSCL2 mRNA]CTDPMID:31150632
BSCL2Human1,2-dimethylhydrazine increases expressionISORGD:131773364804641,2-Dimethylhydrazine results in increased expression of BSCL2 mRNACTDPMID:22206623
BSCL2Human17beta-estradiol increases expressionISORGD:13177336480464Estradiol results in increased expression of BSCL2 mRNACTDPMID:39298647
BSCL2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13177336480464Tetrachlorodibenzodioxin affects the expression of BSCL2 mRNACTDPMID:21570461
BSCL2Human4,4'-sulfonyldiphenol increases expressionISORGD:13177336480464bisphenol S results in increased expression of BSCL2 mRNACTDPMID:39298647
BSCL2Human4,4'-sulfonyldiphenol multiple interactionsISORGD:13081356480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of more ...CTDPMID:36041667
BSCL2Human4-nitroquinoline N-oxide increases expressionISORGD:131773364804644-Nitroquinoline-1-oxide results in increased expression of BSCL2 mRNACTDPMID:22003191
BSCL2Human6-propyl-2-thiouracil decreases expressionISORGD:13081356480464Propylthiouracil results in decreased expression of BSCL2 mRNACTDPMID:24780913
BSCL2Human7,12-dimethyltetraphene increases expressionISORGD:131773364804649,10-Dimethyl-1,2-benzanthracene results in increased expression of BSCL2 mRNACTDPMID:22003191
BSCL2Humanaflatoxin B1 increases expressionISORGD:13177336480464Aflatoxin B1 results in increased expression of BSCL2 mRNACTDPMID:19770486|PMID:22003191
BSCL2Humanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of BSCL2 geneCTDPMID:27153756
BSCL2Humanantimycin A decreases expressionEXP 6480464Antimycin A results in decreased expression of BSCL2 mRNACTDPMID:33512557
BSCL2Humanaphidicolin multiple interactionsISORGD:13177336480464[7-hydroxystaurosporine results in decreased activity of [CHEK1 protein co-treated with BSCL2 protein]] inhibits the reaction more ...CTDPMID:22003191
BSCL2Humanaphidicolin increases expressionISORGD:13177336480464Aphidicolin results in increased expression of BSCL2 mRNACTDPMID:22003191
BSCL2Humanarsane multiple interactionsEXP 6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of BSCL2 more ...CTDPMID:39836092
BSCL2Humanarsenic atom multiple interactionsEXP 6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of BSCL2 more ...CTDPMID:39836092
BSCL2Humanbenzo[a]pyrene increases expressionISORGD:13177336480464Benzo(a)pyrene results in increased expression of BSCL2 mRNACTDPMID:19770486|PMID:22003191
BSCL2Humanbenzo[a]pyrene affects methylationEXP 6480464Benzo(a)pyrene affects the methylation of BSCL2 promoterCTDPMID:27901495
BSCL2Humanbenzo[a]pyrene multiple interactionsISORGD:13177336480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in increased expression of more ...CTDPMID:27858113

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Biological Process
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Original Reference(s)
BSCL2Humanadipose tissue development acts_upstream_of_or_withinISOMGI:50143259068941 PMID:21551454MGIPMID:21551454
BSCL2Humanadipose tissue development involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humancentral nervous system development involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humanchromosome organization involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humancytosolic lipolysis acts_upstream_of_or_withinISOMGI:2386686,MGI:56299379068941 PMID:24622797MGIPMID:24622797
BSCL2Humandetermination of adult lifespan involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humanfat cell differentiation involved_inISSUniProtKB:Q9Z2E9150520179 UniProtGO_REF:0000024
BSCL2Humanfat cell differentiation acts_upstream_of_or_withinISORGD:13177339068941 PMID:23458123MGIPMID:23458123
BSCL2Humangene expression involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humanhair follicle development involved_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humanlipid catabolic process involved_inIEAUniProtKB-KW:KW-0442150520179 UniProtGO_REF:0000043
BSCL2Humanlipid droplet formation involved_inIDA 150520179 PMID:31178403, PMID:31708432UniProtPMID:31178403|PMID:31708432
BSCL2Humanlipid droplet formation acts_upstream_of_or_withinISORGD:13177339068941 PMID:23458123MGIPMID:23458123
BSCL2Humanlipid droplet formation involved_inIEAARBA:ARBA00027908150520179 UniProtGO_REF:0000117
BSCL2Humanlipid droplet formation involved_inIMP 150520179 PMID:27564575, PMID:27879284UniProtPMID:27564575|PMID:27879284
BSCL2Humanlipid droplet organization involved_inIBAFB:FBgn0040336|MGI:1298392|PANTHER:PTN000476621|TAIR:locus:2019347|TAIR:locus:2040884|TAIR:locus:2171412|UniProtKB:Q96G97|dictyBase:DDB_G0287697150520179 GO_CentralGO_REF:0000033
BSCL2Humanlipid droplet organization acts_upstream_of_or_withinISOMGI:50143259068941 PMID:24778225MGIPMID:24778225
BSCL2Humanlipid droplet organization involved_inIMP 150520179 PMID:19278620UniProtPMID:19278620
BSCL2Humanlipid metabolic process involved_inIEAUniProtKB-KW:KW-0443150520179 UniProtGO_REF:0000043
BSCL2Humanlipid storage involved_inIMP 150520179 PMID:19278620UniProtPMID:19278620
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Cellular Component
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BSCL2Humancytoplasm is_active_inISORGD:13177339068941 PMID:30735131MGIPMID:30735131
BSCL2Humanendoplasmic reticulum located_inIEAARBA:ARBA00028672150520179 UniProtGO_REF:0000117
BSCL2Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
BSCL2Humanendoplasmic reticulum membrane is_active_inIBAFB:FBgn0040336|PANTHER:PTN000476621|UniProtKB:Q96G97|dictyBase:DDB_G0287697150520179 GO_CentralGO_REF:0000033
BSCL2Humanendoplasmic reticulum membrane located_inIDA 150520179 PMID:14981520, PMID:27879284, PMID:30901948, PMID:31708432UniProtPMID:14981520|PMID:27879284|PMID:30901948|PMID:31708432
BSCL2Humanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
BSCL2Humanlipid droplet located_inIEAUniProtKB-SubCell:SL-0154150520179 UniProtGO_REF:0000044
BSCL2Humanlipid droplet located_inIEAUniProtKB-KW:KW-0551150520179 UniProtGO_REF:0000043
BSCL2Humanlipid droplet located_inIDA 150520179 PMID:27879284, PMID:30970241UniProtPMID:27879284|PMID:30970241
BSCL2Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
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Molecular Function

  
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BSCL2Humanphospholipid binding enablesIDA 150520179 PMID:30293840UniProtPMID:30293840
BSCL2Humanprotein binding enablesIPIUniProtKB:A2RU14|UniProtKB:A5PKU2|UniProtKB:A8MQ03|UniProtKB:O00526|UniProtKB:O43561-2|UniProtKB:O60636|UniProtKB:O75063|UniProtKB:O95393|UniProtKB:P0DN84|UniProtKB:P11686|UniProtKB:P42857|UniProtKB:P49639|UniProtKB:Q07325|UniProtKB:Q13021|UniProtKB:Q15836|UniProtKB:Q3LI67|UniProtKB:Q63HR2|UniProtKB:Q6UX06|UniProtKB:Q7Z2K6|UniProtKB:Q86W74-2|UniProtKB:Q8N609|UniProtKB:Q8N6F1-2|UniProtKB:Q8N6R1|UniProtKB:Q8NHY0|UniProtKB:Q96FZ5|UniProtKB:Q96HH6|UniProtKB:Q96IK5|UniProtKB:Q96LM6|UniProtKB:Q9BZL3|UniProtKB:Q9H0R3|UniProtKB:Q9H0R8|UniProtKB:Q9NS64|UniProtKB:Q9NZ43|UniProtKB:Q9Y6X1150520179 PMID:32296183IntActPMID:32296183
BSCL2Humanprotein binding enablesIPIUniProtKB:Q96B96150520179 PMID:30901948, PMID:31708432UniProtPMID:30901948|PMID:31708432
BSCL2Humanprotein binding enablesIPIUniProtKB:Q96HH6|UniProtKB:Q9BZL3150520179 PMID:16189514IntActPMID:16189514
BSCL2Humanprotein binding enablesIPIUniProtKB:Q96HH6150520179 PMID:31515488IntActPMID:31515488
BSCL2Humanprotein binding enablesIPIUniProtKB:Q9HBF4|UniProtKB:Q9NP72150520179 PMID:30970241UniProtPMID:30970241
BSCL2Humanprotein binding enablesIPIUniProtKB:P16284|UniProtKB:P54252|UniProtKB:Q7Z3I7|UniProtKB:Q8WXH5|UniProtKB:Q96CV9|UniProtKB:Q96EL1|UniProtKB:Q99932-2|UniProtKB:Q9GZS3|UniProtKB:Q9HC96|UniProtKB:Q9UNE7|UniProtKB:Q9UNS2150520179 PMID:32814053IntActPMID:32814053
BSCL2Humanprotein binding enablesIPIUniProtKB:H3BR10|UniProtKB:P42857|UniProtKB:Q96HH6|UniProtKB:Q9BZL3|UniProtKB:Q9H8W4150520179 PMID:25416956IntActPMID:25416956

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BSCL2HumanAbnormal facial shape  IAGP 8699517 HPOORPHA:528
BSCL2HumanAbnormal motor nerve conduction velocity  IAGP 8699517 HPOORPHA:100998|ORPHA:139536
BSCL2HumanAbnormal pyramidal sign  IAGP 8699517 HPOMIM:615924|ORPHA:363400
BSCL2HumanAbnormality of the foot musculature  IAGP 8699517 HPOORPHA:100998
BSCL2HumanAbnormally high-pitched voice  IAGP 8699517 HPOMIM:269700
BSCL2HumanAcanthosis nigricans  IAGP 8699517 HPOMIM:269700|PMID:11479539|ORPHA:363400|ORPHA:528
BSCL2HumanAccelerated skeletal maturation  IAGP 8699517 HPOMIM:269700|ORPHA:528
BSCL2HumanAcute pancreatitis  IAGP 8699517 HPOMIM:269700
BSCL2HumanAdipose tissue loss  IAGP 8699517 HPOORPHA:528
BSCL2HumanAdult onset  IAGP 8699517 HPOMIM:619112|PMID:20806400
BSCL2HumanAmenorrhea  IAGP 8699517 HPOORPHA:528
BSCL2HumanAnkle weakness  IAGP 8699517 HPOORPHA:100998
BSCL2HumanAtaxia  IAGP 8699517 HPOMIM:615924|ORPHA:363400
BSCL2HumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:270685|PMID:14981520|MIM:619112|PMID:20806400
BSCL2HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:269700|PMID:11479539|MIM:615924
BSCL2HumanBabinski sign  IAGP 8699517 HPOMIM:270685|PMID:23553728|MIM:619112|PMID:20806400|ORPHA:100998
BSCL2HumanBone cyst  IAGP 8699517 HPOORPHA:528
BSCL2HumanBrisk reflexes  IAGP 8699517 HPOORPHA:363400
BSCL2HumanCaudate atrophy  IAGP 8699517 HPOORPHA:363400
BSCL2HumanCerebral atrophy  IAGP 8699517 HPOMIM:615924|ORPHA:363400
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Source
Original Reference(s)
BSCL2HumanAbnormal central motor function  IAGPRGD:85964768554872ClinVar Annotator: match by term: Abnormal central motor functionClinVarPMID:11479539|PMID:14981520|PMID:17387721|PMID:17486577|PMID:20806400|PMID:21957196|PMID:24604904|PMID:25487175|PMID:25741868|PMID:25832430|PMID:26467025|PMID:26815532|PMID:26989944|PMID:27027447|PMID:27738760|PMID:27862672|PMID:28362824|PMID:28492532|PMID:31372974|PMID:31475473|PMID:34232518
BSCL2HumanBreast carcinoma  IAGPRGD:1505339648554872ClinVar Annotator: match by term: Breast carcinomaClinVar 
BSCL2HumanCongenital generalized lipodystrophy  IAGPRGD:100534888554872ClinVar Annotator: match by term: Congenital generalized lipodystrophyClinVarPMID:25741868|PMID:26467025|PMID:28492532
BSCL2HumanIntellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
BSCL2HumanIsolated systolic hypertension  IAGPRGD:86591078554872ClinVar Annotator: match by term: Isolated systolic hypertensionClinVarPMID:25741868|PMID:28492532
BSCL2HumanLipodystrophy  IAGPRGD:5969443208554872ClinVar Annotator: match by term: LipodystrophyClinVarPMID:25741868
BSCL2HumanLipodystrophy  IAGPRGD:128957188554872ClinVar Annotator: match by term: LipodystrophyClinVarPMID:18057387|PMID:25741868
BSCL2HumanNeutrophilia in presence of infection  IAGPRGD:86591078554872ClinVar Annotator: match by term: Neutrophilia in presence of infectionClinVarPMID:25741868|PMID:28492532
BSCL2HumanPeripheral neuropathy  IAGPRGD:85964758554872ClinVar Annotator: match by term: Peripheral neuropathyClinVarPMID:14981520|PMID:15126564|PMID:15732094|PMID:16427281|PMID:16574104|PMID:1674639|PMID:17387721|PMID:18585921|PMID:18612770|PMID:18790819|PMID:19396477|PMID:20598714|PMID:21750110|PMID:21957196|PMID:22045697|PMID:22474068|PMID:23553728|PMID:24345054|PMID:25219579|PMID:25454168|PMID:25741868|PMID:26467025|PMID:27738760|PMID:28492532|PMID:29269637|PMID:32320108|PMID:34085946|PMID:34942918|PMID:5964029
BSCL2HumanReduced delayed hypersensitivity  IAGPRGD:1505339648554872ClinVar Annotator: match by term: Reduced delayed hypersensitivityClinVar 
BSCL2HumanSymphalangism affecting the proximal phalanx of the 4th finger  IAGPRGD:1505339648554872ClinVar Annotator: match by term: Symphalangism affecting the proximal phalanx of the 4th fingerClinVar 
BSCL2HumanTriangular shaped proximal phalanx of the thumb  IAGPRGD:86591078554872ClinVar Annotator: match by term: Triangular shaped proximal phalanx of the thumbClinVarPMID:25741868|PMID:28492532
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Reference Title
Reference Citation
1. Seipin is necessary for normal brain development and spermatogenesis in addition to adipogenesis. Ebihara C, etal., Hum Mol Genet. 2015 Aug 1;24(15):4238-49. doi: 10.1093/hmg/ddv156. Epub 2015 May 1.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Localization, cDNA sequence and genomic organization of the rat seipin gene (Bscl2) and sequence analysis in inbred rat models of Type 2 diabetes mellitus. Kaisaki PJ, etal., Cytogenet Genome Res. 2002;98(1):71-4.
4. Identification of the gene altered in Berardinelli-Seip congenital lipodystrophy on chromosome 11q13. Magre J, etal., Nat Genet. 2001 Aug;28(4):365-70.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
9. Refinement of the Silver syndrome locus on chromosome 11q12-q14 in four families and exclusion of eight candidate genes. Windpassinger C, etal., Hum Genet. 2003 Dec;114(1):99-109. Epub 2003 Sep 16.
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1 to 10 of 11 rows
PMID:8125298   PMID:8619474   PMID:9110174   PMID:11389484   PMID:12477932   PMID:14602785   PMID:14702039   PMID:14981520   PMID:15126564   PMID:15181077   PMID:15342556   PMID:15489334  
PMID:15732094   PMID:16189514   PMID:16341674   PMID:16344560   PMID:16427281   PMID:16435205   PMID:16751776   PMID:17387721   PMID:17420921   PMID:17486577   PMID:17535271   PMID:17663003  
PMID:18093937   PMID:18155601   PMID:18224579   PMID:18250201   PMID:18458148   PMID:18585921   PMID:18612770   PMID:18690553   PMID:18698612   PMID:19226263   PMID:19252810   PMID:19278620  
PMID:19323790   PMID:19396477   PMID:19438831   PMID:19574402   PMID:19762912   PMID:20301391   PMID:20301484   PMID:20301682   PMID:20598714   PMID:20806400   PMID:21750110   PMID:21873635  
PMID:21957196   PMID:22157746   PMID:22234369   PMID:22427291   PMID:22474068   PMID:22810586   PMID:23088713   PMID:23142943   PMID:23470542   PMID:23553728   PMID:23564749   PMID:23659685  
PMID:23907395   PMID:23989774   PMID:24554482   PMID:24778225   PMID:24961962   PMID:25195639   PMID:25219579   PMID:25416956   PMID:25487175   PMID:25832430   PMID:26186194   PMID:26282322  
PMID:26815532   PMID:26871637   PMID:26975546   PMID:27025967   PMID:27107014   PMID:27391332   PMID:27564575   PMID:27612026   PMID:27634302   PMID:27748422   PMID:27806294   PMID:27838812  
PMID:27862672   PMID:27868354   PMID:27879284   PMID:28514442   PMID:28611215   PMID:28916377   PMID:29336362   PMID:29478747   PMID:29892012   PMID:30266686   PMID:30277474   PMID:30293840  
PMID:30447390   PMID:30575818   PMID:30871963   PMID:30901948   PMID:30903322   PMID:30940487   PMID:30970241   PMID:31178403   PMID:31391242   PMID:31515488   PMID:31708432   PMID:32094408  
PMID:32108980   PMID:32236581   PMID:32296183   PMID:32320108   PMID:32814053   PMID:33147895   PMID:33315072   PMID:33481779   PMID:33545068   PMID:33674387   PMID:33845483   PMID:33961781  
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BSCL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,690,262 - 62,709,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,689,289 - 62,709,845 (-)EnsemblGRCh38hg38GRCh38
GRCh371162,457,734 - 62,477,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,214,323 - 62,231,395 (-)NCBINCBI36Build 36hg18NCBI36
Build 341162,214,322 - 62,231,395NCBI
Celera1159,786,117 - 59,805,403 (-)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,786,515 - 58,805,891 (-)NCBIHuRef
CHM1_11162,340,845 - 62,360,176 (-)NCBICHM1_1
T2T-CHM13v2.01162,679,681 - 62,698,954 (-)NCBIT2T-CHM13v2.0
Bscl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,814,831 - 8,826,047 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,814,831 - 8,826,047 (+)EnsemblGRCm39 Ensembl
GRCm38198,837,467 - 8,848,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,837,467 - 8,848,683 (+)EnsemblGRCm38mm10GRCm38
MGSCv37198,911,957 - 8,923,173 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,906,548 - 8,915,712 (+)NCBIMGSCv36mm8
Celera198,597,278 - 8,608,494 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.76NCBI
Bscl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,160,764 - 215,172,540 (+)NCBIGRCr8
mRatBN7.21205,731,828 - 205,743,430 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,733,872 - 205,743,421 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,140,405 - 214,151,980 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,175,225 - 221,186,823 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,868,074 - 213,879,673 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01225,035,956 - 225,046,137 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1225,037,737 - 225,046,040 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,972,073 - 231,983,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,509,675 - 211,518,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,668,104 - 211,677,392 (+)NCBI
Celera1203,246,734 - 203,256,205 (+)NCBICelera
Cytogenetic Map1q43NCBI
Bscl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599507,501 - 514,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955599505,725 - 514,225 (+)NCBIChiLan1.0ChiLan1.0
BSCL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,916,547 - 63,934,968 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11164,959,248 - 64,976,477 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,046,842 - 58,064,219 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,399,314 - 61,416,494 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,399,314 - 61,416,494 (-)Ensemblpanpan1.1panPan2
BSCL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,958,380 - 53,971,120 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,958,475 - 53,971,119 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,563,744 - 52,576,469 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01855,010,452 - 55,023,323 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1855,010,741 - 55,023,896 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,106,793 - 54,119,570 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,681,289 - 53,694,035 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,477,585 - 54,490,344 (+)NCBIUU_Cfam_GSD_1.0
Bscl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,453,683 - 10,463,113 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581567,662 - 578,267 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581567,426 - 576,859 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BSCL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl29,052,070 - 9,064,886 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.129,052,676 - 9,064,890 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,400,731 - 8,410,537 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BSCL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,198,033 - 11,216,709 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,200,356 - 11,216,622 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,534,784 - 108,555,013 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bscl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,190,072 - 1,196,076 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,189,990 - 1,197,220 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in BSCL2
562 total Variants

1 to 10 of 661 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001122955.4(BSCL2):c.457G>A (p.Val153Ile) single nucleotide variant not provided [RCV000521639] Chr11:62702497 [GRCh38]
Chr11:62469969 [GRCh37]
Chr11:11q12.3
likely pathogenic|uncertain significance
NM_001122955.4(BSCL2):c.631G>A (p.Val211Met) single nucleotide variant not provided [RCV004777698]|not specified [RCV000517737] Chr11:62692797 [GRCh38]
Chr11:62460269 [GRCh37]
Chr11:11q12.3
uncertain significance
NM_001122955.4(BSCL2):c.809G>T (p.Arg270Leu) single nucleotide variant Charcot-Marie-Tooth disease type 2 [RCV005056063]|Hereditary spastic paraplegia [RCV000516060] Chr11:62692430 [GRCh38]
Chr11:62459902 [GRCh37]
Chr11:11q12.3
uncertain significance
NM_001122955.4(BSCL2):c.895G>A (p.Ala299Thr) single nucleotide variant Charcot-Marie-Tooth disease type 2 [RCV000526218]|Hereditary spastic paraplegia [RCV000515840] Chr11:62691390 [GRCh38]
Chr11:62458862 [GRCh37]
Chr11:11q12.3
uncertain significance
NM_001122955.4(BSCL2):c.885G>A (p.Pro295=) single nucleotide variant Charcot-Marie-Tooth disease type 2 [RCV001407254]|not provided [RCV000516898] Chr11:62691400 [GRCh38]
Chr11:62458872 [GRCh37]
Chr11:11q12.3
likely benign
NM_001122955.4(BSCL2):c.384_385delinsGGA (p.Ser128fs) indel Berardinelli-Seip congenital lipodystrophy [RCV003311635]|Congenital generalized lipodystrophy type 2 [RCV000004789] Chr11:62705320..62705321 [GRCh38]
Chr11:62472792..62472793 [GRCh37]
Chr11:11q12.3
pathogenic|uncertain significance
NM_001122955.4(BSCL2):c.493_494insAA (p.Met165fs) insertion Berardinelli-Seip congenital lipodystrophy [RCV003311636]|Congenital generalized lipodystrophy type 2 [RCV000004790] Chr11:62694704..62694705 [GRCh38]
Chr11:62462176..62462177 [GRCh37]
Chr11:11q12.3
pathogenic|uncertain significance
NM_001122955.4(BSCL2):c.507_508del (p.Tyr170fs) deletion Berardinelli-Seip congenital lipodystrophy [RCV003311637]|Congenital generalized lipodystrophy type 2 [RCV000004791] Chr11:62694690..62694691 [GRCh38]
Chr11:62462162..62462163 [GRCh37]
Chr11:11q12.3
pathogenic|uncertain significance
BSCL2, 258-BP DEL/12-BP INS indel Congenital generalized lipodystrophy type 2 [RCV000004792] Chr11:11q13 pathogenic
NM_001122955.4(BSCL2):c.509_513del (p.Tyr170fs) deletion Berardinelli-Seip congenital lipodystrophy [RCV003311638]|Charcot-Marie-Tooth disease type 2 [RCV005089168]|Congenital generalized lipodystrophy type 2 [RCV000004793]|Severe neurodegenerative syndrome with lipodystrophy [RCV000133399]|not provided [RCV001091624] Chr11:62694685..62694689 [GRCh38]
Chr11:62462157..62462161 [GRCh37]
Chr11:11q12.3
pathogenic|uncertain significance
1 to 10 of 661 rows

Predicted Target Of
Summary Value
Count of predictions:7911
Count of miRNA genes:1128
Interacting mature miRNAs:1457
Transcripts:ENST00000278893, ENST00000301781, ENST00000360796, ENST00000403098, ENST00000403550, ENST00000405837, ENST00000407022, ENST00000412351, ENST00000413908, ENST00000421906, ENST00000433053, ENST00000448568, ENST00000449636, ENST00000463679, ENST00000464544, ENST00000468505, ENST00000470529, ENST00000524862, ENST00000525000, ENST00000526426, ENST00000528874, ENST00000530009, ENST00000530900, ENST00000531524, ENST00000532115, ENST00000532818, ENST00000533982, ENST00000537604
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
597097842GWAS1193916_Hprotein measurement QTL GWAS1193916 (human)1e-08protein measurement116269647262696473Human
597137569GWAS1233643_Hsmoking initiation QTL GWAS1233643 (human)4e-13smoking initiation116269080362690804Human
597512100GWAS1608174_Heducational attainment QTL GWAS1608174 (human)8e-11educational attainment116269474562694746Human
407096189GWAS745165_Hresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy QTL GWAS745165 (human)0.000006response to viral infection trait (VT:0010439)116269375762693758Human
597476898GWAS1572972_Hsmoking status measurement QTL GWAS1572972 (human)8e-09smoking status measurement116270607662706077Human

D11S987  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371167,893,340 - 67,893,449UniSTSGRCh37
Celera1165,227,362 - 65,227,471UniSTS
HuRef1164,228,670 - 64,228,775UniSTS
Marshfield Genetic Map1167.48RGD
D11S1765  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371160,778,544 - 60,778,777UniSTSGRCh37
Build 361160,535,120 - 60,535,353RGDNCBI36
Celera1158,139,595 - 58,139,842RGD
Cytogenetic Map11q13UniSTS
Marshfield Genetic Map1161.78UniSTS
Marshfield Genetic Map1161.78RGD
Genethon Genetic Map1165.0UniSTS
TNG Radiation Hybrid Map1126764.0UniSTS
deCODE Assembly Map1165.93UniSTS
GeneMap99-GB4 RH Map11225.4UniSTS
Whitehead-RH Map11298.7UniSTS
Whitehead-YAC Contig Map11 UniSTS
D11S4063  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,457,824 - 62,457,932UniSTSGRCh37
Build 361162,214,400 - 62,214,508RGDNCBI36
Celera1159,786,194 - 59,786,302RGD
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13UniSTS
HuRef1158,786,605 - 58,786,713UniSTS
D11S4928  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,457,829 - 62,458,149UniSTSGRCh37
Build 361162,214,405 - 62,214,725RGDNCBI36
Celera1159,786,199 - 59,786,519RGD
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13UniSTS
HuRef1158,786,610 - 58,786,930UniSTS
TNG Radiation Hybrid Map1127109.0UniSTS
Stanford-G3 RH Map112707.0UniSTS
NCBI RH Map11560.2UniSTS
GeneMap99-G3 RH Map112707.0UniSTS
RH12537  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,476,500 - 62,476,651UniSTSGRCh37
Build 361162,233,076 - 62,233,227RGDNCBI36
Celera1159,804,857 - 59,805,008RGD
Cytogenetic Map11q13UniSTS
Cytogenetic Map11p11UniSTS
HuRef1158,805,300 - 58,805,451UniSTS
GeneMap99-GB4 RH Map11230.64UniSTS
NCBI RH Map11563.0UniSTS
RH12527  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,457,799 - 62,457,939UniSTSGRCh37
Build 361162,214,375 - 62,214,515RGDNCBI36
Celera1159,786,169 - 59,786,309RGD
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11q13UniSTS
HuRef1158,786,580 - 58,786,720UniSTS
GeneMap99-GB4 RH Map11230.64UniSTS
NCBI RH Map11563.0UniSTS
D11S1084  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,478,271 - 62,478,422UniSTSGRCh37
Build 361162,234,847 - 62,234,998RGDNCBI36
Celera1159,806,628 - 59,806,779RGD
Cytogenetic Map11q13UniSTS
HuRef1158,807,071 - 58,807,222UniSTS
Gng3  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371162,475,783 - 62,476,275UniSTSGRCh37
Celera1159,804,140 - 59,804,632UniSTS
HuRef1158,804,583 - 58,805,075UniSTS
D11S987  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map11p13UniSTS
Marshfield Genetic Map1167.48UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2436 2788 2246 4970 1725 2346 4 622 1948 464 2268 7288 6457 52 3734 849 1736 1613 172 1


1 to 30 of 33 rows
RefSeq Transcripts NG_008461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001122955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001130702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001386027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001386028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF052149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK225029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG699373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM763152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP370169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD107822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CQ783924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS072299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB178846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB296305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ575792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ584208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 33 rows

Ensembl Acc Id: ENST00000278893   ⟹   ENSP00000278893
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,276 - 62,706,315 (-)Ensembl
Ensembl Acc Id: ENST00000301781   ⟹   ENSP00000301781
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,312 - 62,707,518 (-)Ensembl
Ensembl Acc Id: ENST00000360796   ⟹   ENSP00000354032
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,275 - 62,707,424 (-)Ensembl
Ensembl Acc Id: ENST00000403098   ⟹   ENSP00000384258
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,281 - 62,692,749 (-)Ensembl
Ensembl Acc Id: ENST00000403550   ⟹   ENSP00000385561
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,295 - 62,706,234 (-)Ensembl
Ensembl Acc Id: ENST00000405837   ⟹   ENSP00000385332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,275 - 62,709,514 (-)Ensembl
Ensembl Acc Id: ENST00000407022   ⟹   ENSP00000384080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,295 - 62,706,344 (-)Ensembl
Ensembl Acc Id: ENST00000412351
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,535 - 62,695,389 (-)Ensembl
Ensembl Acc Id: ENST00000413908   ⟹   ENSP00000393728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,705,494 - 62,707,463 (-)Ensembl
Ensembl Acc Id: ENST00000421906   ⟹   ENSP00000413209
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,315 - 62,706,344 (-)Ensembl
Ensembl Acc Id: ENST00000448568   ⟹   ENSP00000413340
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,692,376 - 62,706,218 (-)Ensembl
Ensembl Acc Id: ENST00000449636   ⟹   ENSP00000405265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,426 (-)Ensembl
Ensembl Acc Id: ENST00000463679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,347 - 62,691,929 (-)Ensembl
Ensembl Acc Id: ENST00000464544   ⟹   ENSP00000431782
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,705,426 - 62,709,845 (-)Ensembl
Ensembl Acc Id: ENST00000468505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,970 - 62,692,797 (-)Ensembl
Ensembl Acc Id: ENST00000470529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,276 - 62,691,178 (-)Ensembl
Ensembl Acc Id: ENST00000524862   ⟹   ENSP00000433888
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,295 - 62,709,536 (-)Ensembl
Ensembl Acc Id: ENST00000525000   ⟹   ENSP00000437044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,694,676 - 62,707,144 (-)Ensembl
Ensembl Acc Id: ENST00000526426
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,692,410 - 62,694,712 (-)Ensembl
Ensembl Acc Id: ENST00000528874   ⟹   ENSP00000436991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,707,126 - 62,709,064 (-)Ensembl
Ensembl Acc Id: ENST00000530009   ⟹   ENSP00000435500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,707,111 - 62,709,845 (-)Ensembl
Ensembl Acc Id: ENST00000530900
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,694,600 - 62,706,256 (-)Ensembl
Ensembl Acc Id: ENST00000531524   ⟹   ENSP00000436026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,692,696 - 62,709,528 (-)Ensembl
Ensembl Acc Id: ENST00000532115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,691,336 - 62,694,711 (-)Ensembl
Ensembl Acc Id: ENST00000532818   ⟹   ENSP00000435831
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,705,336 - 62,709,731 (-)Ensembl
Ensembl Acc Id: ENST00000533982   ⟹   ENSP00000434149
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,694,708 - 62,707,349 (-)Ensembl
Ensembl Acc Id: ENST00000537604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,694,558 - 62,706,220 (-)Ensembl
Ensembl Acc Id: ENST00000679883   ⟹   ENSP00000505838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,275 - 62,709,537 (-)Ensembl
Ensembl Acc Id: ENST00000682003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,292 - 62,703,131 (-)Ensembl
Ensembl Acc Id: ENST00000682223   ⟹   ENSP00000508140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,345 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000682262   ⟹   ENSP00000507103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000682555   ⟹   ENSP00000507814
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000682644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,417 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000682794
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,319 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000683025   ⟹   ENSP00000507028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000683193
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,326 - 62,691,866 (-)Ensembl
Ensembl Acc Id: ENST00000683296   ⟹   ENSP00000507725
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,275 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000683368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,319 - 62,695,388 (-)Ensembl
Ensembl Acc Id: ENST00000683494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,292 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000683846
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,695,537 (-)Ensembl
Ensembl Acc Id: ENST00000683892
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,709,519 (-)Ensembl
Ensembl Acc Id: ENST00000684067   ⟹   ENSP00000506799
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,288 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000684115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000684258
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,291 - 62,695,625 (-)Ensembl
Ensembl Acc Id: ENST00000684285   ⟹   ENSP00000507669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000684475   ⟹   ENSP00000507429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,689,289 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000684609
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,362 - 62,707,587 (-)Ensembl
Ensembl Acc Id: ENST00000684720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1162,690,414 - 62,707,587 (-)Ensembl
RefSeq Acc Id: NM_001122955   ⟹   NP_001116427
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,690,275 - 62,707,424 (-)NCBI
GRCh371162,457,734 - 62,477,091 (-)ENTREZGENE
HuRef1158,786,515 - 58,805,891 (-)ENTREZGENE
CHM1_11162,340,845 - 62,358,264 (-)NCBI
T2T-CHM13v2.01162,679,694 - 62,696,841 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001130702   ⟹   NP_001124174
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,690,262 - 62,706,315 (-)NCBI
GRCh371162,457,734 - 62,477,091 (-)ENTREZGENE
HuRef1158,786,515 - 58,805,891 (-)ENTREZGENE
CHM1_11162,340,845 - 62,356,875 (-)NCBI
T2T-CHM13v2.01162,679,681 - 62,695,735 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001386027   ⟹   NP_001372956
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,690,275 - 62,709,537 (-)NCBI
T2T-CHM13v2.01162,679,694 - 62,698,954 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001386028   ⟹   NP_001372957
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,690,275 - 62,709,537 (-)NCBI
T2T-CHM13v2.01162,679,694 - 62,698,954 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032667   ⟹   NP_116056
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,690,262 - 62,706,315 (-)NCBI
GRCh371162,457,734 - 62,477,091 (-)ENTREZGENE
Build 361162,214,323 - 62,231,395 (-)NCBI Archive
HuRef1158,786,515 - 58,805,891 (-)ENTREZGENE
CHM1_11162,340,845 - 62,356,875 (-)NCBI
T2T-CHM13v2.01162,679,681 - 62,695,735 (-)NCBI
Sequence:
1 to 30 of 41 rows
Protein RefSeqs NP_001116427 (Get FASTA)   NCBI Sequence Viewer  
  NP_001124174 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372956 (Get FASTA)   NCBI Sequence Viewer  
  NP_001372957 (Get FASTA)   NCBI Sequence Viewer  
  NP_116056 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH04911 (Get FASTA)   NCBI Sequence Viewer  
  AAH12140 (Get FASTA)   NCBI Sequence Viewer  
  AAH41640 (Get FASTA)   NCBI Sequence Viewer  
  AAH93048 (Get FASTA)   NCBI Sequence Viewer  
  ACA50720 (Get FASTA)   NCBI Sequence Viewer  
  ALQ34053 (Get FASTA)   NCBI Sequence Viewer  
  ALQ34054 (Get FASTA)   NCBI Sequence Viewer  
  BAB55175 (Get FASTA)   NCBI Sequence Viewer  
  BAC11543 (Get FASTA)   NCBI Sequence Viewer  
  BAD97326 (Get FASTA)   NCBI Sequence Viewer  
  CAF86927 (Get FASTA)   NCBI Sequence Viewer  
  CAI93437 (Get FASTA)   NCBI Sequence Viewer  
  EAW74070 (Get FASTA)   NCBI Sequence Viewer  
  EAW74071 (Get FASTA)   NCBI Sequence Viewer  
  EAW74072 (Get FASTA)   NCBI Sequence Viewer  
  EAW74073 (Get FASTA)   NCBI Sequence Viewer  
  EAW74074 (Get FASTA)   NCBI Sequence Viewer  
  EAW74075 (Get FASTA)   NCBI Sequence Viewer  
  EAW74076 (Get FASTA)   NCBI Sequence Viewer  
  EAW74077 (Get FASTA)   NCBI Sequence Viewer  
  EAW74078 (Get FASTA)   NCBI Sequence Viewer  
  EAW74080 (Get FASTA)   NCBI Sequence Viewer  
  EAW74081 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000278893
  ENSP00000278893.7
1 to 30 of 41 rows
1 to 5 of 33 rows
1 to 5 of 33 rows
RefSeq Acc Id: NP_001116427   ⟸   NM_001122955
- Peptide Label: isoform 1
- UniProtKB: A0A804HK11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001124174   ⟸   NM_001130702
- Peptide Label: isoform 3
- UniProtKB: Q96G97 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_116056   ⟸   NM_032667
- Peptide Label: isoform 2
- UniProtKB: Q96SV1 (UniProtKB/Swiss-Prot),   Q567S1 (UniProtKB/Swiss-Prot),   G3XAE4 (UniProtKB/Swiss-Prot),   Q9BSQ0 (UniProtKB/Swiss-Prot),   Q96G97 (UniProtKB/Swiss-Prot),   A0A024R549 (UniProtKB/TrEMBL),   Q53EN3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000431782   ⟸   ENST00000464544
Ensembl Acc Id: ENSP00000435500   ⟸   ENST00000530009

Name Modeler Protein Id AA Range Protein Structure
AF-Q96G97-F1-model_v2 AlphaFold Q96G97 1-398 view protein structure

RGD ID:6788527
Promoter ID:HG_KWN:13125
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000319195
Position:
Human AssemblyChrPosition (strand)Source
Build 361162,230,151 - 62,230,651 (-)MPROMDB
RGD ID:6788802
Promoter ID:HG_KWN:13126
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000403098,   ENST00000403734,   OTTHUMT00000319184,   OTTHUMT00000319187,   UC001NUO.1,   UC001NUQ.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361162,230,161 - 62,230,661 (-)MPROMDB
RGD ID:6788528
Promoter ID:HG_KWN:13127
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001122955,   OTTHUMT00000319181,   OTTHUMT00000319189,   UC001NUS.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361162,231,676 - 62,232,772 (-)MPROMDB
RGD ID:6788529
Promoter ID:HG_KWN:13129
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001130702,   OTTHUMT00000319188,   UC001NUT.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361162,233,556 - 62,234,377 (-)MPROMDB
RGD ID:7220687
Promoter ID:EPDNEW_H16090
Type:initiation region
Name:BSCL2_4
Description:BSCL2, seipin lipid droplet biogenesis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16091  EPDNEW_H16093  EPDNEW_H16096  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,691,073 - 62,691,133EPDNEW
RGD ID:7220691
Promoter ID:EPDNEW_H16091
Type:initiation region
Name:BSCL2_1
Description:BSCL2, seipin lipid droplet biogenesis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16090  EPDNEW_H16093  EPDNEW_H16096  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,706,315 - 62,706,375EPDNEW
RGD ID:7220695
Promoter ID:EPDNEW_H16093
Type:initiation region
Name:BSCL2_3
Description:BSCL2, seipin lipid droplet biogenesis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16090  EPDNEW_H16091  EPDNEW_H16096  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,707,424 - 62,707,484EPDNEW
RGD ID:7220699
Promoter ID:EPDNEW_H16096
Type:initiation region
Name:BSCL2_2
Description:BSCL2, seipin lipid droplet biogenesis associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H16090  EPDNEW_H16091  EPDNEW_H16093  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381162,709,536 - 62,709,596EPDNEW


1 to 40 of 61 rows
Database
Acc Id
Source(s)
COSMIC BSCL2 COSMIC
Ensembl Genes ENSG00000168000 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000278893 ENTREZGENE
  ENST00000278893.11 UniProtKB/Swiss-Prot
  ENST00000360796 ENTREZGENE
  ENST00000360796.10 UniProtKB/Swiss-Prot
  ENST00000403550.5 UniProtKB/Swiss-Prot
  ENST00000405837 ENTREZGENE
  ENST00000407022 ENTREZGENE
  ENST00000407022.7 UniProtKB/Swiss-Prot
  ENST00000421906.5 UniProtKB/Swiss-Prot
  ENST00000524862.6 UniProtKB/Swiss-Prot
  ENST00000679883 ENTREZGENE
  ENST00000679883.1 UniProtKB/Swiss-Prot
GTEx ENSG00000168000 GTEx
HGNC ID HGNC:15832 ENTREZGENE
Human Proteome Map BSCL2 Human Proteome Map
InterPro Seipin UniProtKB/Swiss-Prot
KEGG Report hsa:26580 UniProtKB/Swiss-Prot
NCBI Gene 26580 ENTREZGENE
OMIM 606158 OMIM
PANTHER PTHR21212 UniProtKB/Swiss-Prot
  SEIPIN UniProtKB/Swiss-Prot
Pfam Seipin UniProtKB/Swiss-Prot
PharmGKB PA25432 PharmGKB
UniProt A0A024R541 ENTREZGENE
  A0A024R549 ENTREZGENE, UniProtKB/TrEMBL
  A0A0S2Z544_HUMAN UniProtKB/TrEMBL
  A0A804HHX0_HUMAN UniProtKB/TrEMBL
  A0A804HIE2_HUMAN UniProtKB/TrEMBL
  A0A804HIJ7_HUMAN UniProtKB/TrEMBL
  A0A804HJB1_HUMAN UniProtKB/TrEMBL
  A0A804HJW1_HUMAN UniProtKB/TrEMBL
  A0A804HK11 ENTREZGENE, UniProtKB/TrEMBL
  A0A804HK83_HUMAN UniProtKB/TrEMBL
  A0A804HKZ9_HUMAN UniProtKB/TrEMBL
  B1PWS6_HUMAN UniProtKB/TrEMBL
  BSCL2_HUMAN UniProtKB/Swiss-Prot
  E9PIU3_HUMAN UniProtKB/TrEMBL
  E9PJK0_HUMAN UniProtKB/TrEMBL
1 to 40 of 61 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 BSCL2  BSCL2 lipid droplet biogenesis associated, seipin    BSCL2, seipin lipid droplet biogenesis associated  Symbol and/or name change 5135510 APPROVED
2016-05-31 BSCL2  BSCL2, seipin lipid droplet biogenesis associated    Berardinelli-Seip congenital lipodystrophy 2 (seipin)  Symbol and/or name change 5135510 APPROVED
2016-03-09 BSCL2  Berardinelli-Seip congenital lipodystrophy 2 (seipin)  SPG17  spastic paraplegia 17 (Silver syndrome)  Data merged from RGD:1344469 737654 PROVISIONAL