Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | VIL1 | Human | cholestasis | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | VIL1 | Human | cholestasis | | EXP | | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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# | Reference Title | Reference Citation |
1. | GOAs Human GO annotations | GOA_HUMAN data from the GO Consortium |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:1961750 | PMID:2846586 | PMID:2892781 | PMID:3453110 | PMID:3510866 | PMID:3793760 | PMID:6893424 | PMID:8125298 | PMID:11500485 | PMID:12445810 | PMID:12477932 | PMID:12937273 |
PMID:14594952 | PMID:15096633 | PMID:15272027 | PMID:15342556 | PMID:15342783 | PMID:15576363 | PMID:16189514 | PMID:16921170 | PMID:17182858 | PMID:17229814 | PMID:17353931 | PMID:17537734 |
PMID:17606613 | PMID:17847007 | PMID:18029348 | PMID:18054784 | PMID:18307996 | PMID:19056867 | PMID:19371634 | PMID:19377296 | PMID:19808673 | PMID:21492153 | PMID:21623163 | PMID:21654808 |
PMID:21741320 | PMID:21873635 | PMID:22530999 | PMID:23376485 | PMID:23383273 | PMID:23533167 | PMID:24250806 | PMID:24266897 | PMID:25337239 | PMID:25517957 | PMID:25600187 | PMID:26209609 |
PMID:26334299 | PMID:26344197 | PMID:26537799 | PMID:26658611 | PMID:28514442 | PMID:28536478 | PMID:28704336 | PMID:28832070 | PMID:28902428 | PMID:28953659 | PMID:29274870 | PMID:29676528 |
PMID:30884312 | PMID:32520642 | PMID:32814053 | PMID:33022573 | PMID:33024199 | PMID:33644029 | PMID:33961781 | PMID:34299191 | PMID:35124280 | PMID:35575683 | PMID:35944360 | PMID:36217030 |
PMID:36244648 | PMID:36877072 | PMID:37704626 |
VIL1 (Homo sapiens - human) |
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Vil1 (Mus musculus - house mouse) |
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Vil1 (Rattus norvegicus - Norway rat) |
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Vil1 (Chinchilla lanigera - long-tailed chinchilla) |
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VIL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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VIL1 (Canis lupus familiaris - dog) |
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Vil1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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VIL1 (Sus scrofa - pig) |
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VIL1 (Chlorocebus sabaeus - green monkey) |
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Vil1 (Heterocephalus glaber - naked mole-rat) |
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Variants in VIL1
70 total Variants |
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 | copy number gain | See cases [RCV000051119] | Chr2:194898783..236473913 [GRCh38] Chr2:195763507..237382556 [GRCh37] Chr2:195471752..237047295 [NCBI36] Chr2:2q32.3-37.3 |
pathogenic |
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 | copy number gain | See cases [RCV000052958] | Chr2:188818195..242065208 [GRCh38] Chr2:189682921..243007359 [GRCh37] Chr2:189391166..242656032 [NCBI36] Chr2:2q32.2-37.3 |
pathogenic |
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 | copy number gain | See cases [RCV000052959] | Chr2:190310736..241892770 [GRCh38] Chr2:191175462..242834921 [GRCh37] Chr2:190883707..242483594 [NCBI36] Chr2:2q32.2-37.3 |
pathogenic |
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] | Chr2:193122313..241074980 [GRCh38] Chr2:193987039..242014395 [GRCh37] Chr2:193695284..241663068 [NCBI36] Chr2:2q32.3-37.3 |
pathogenic |
GRCh38/hg38 2q34-36.3(chr2:212614422-227121230)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052964]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052964]|See cases [RCV000052964] | Chr2:212614422..227121230 [GRCh38] Chr2:213479146..227985946 [GRCh37] Chr2:213187391..227694190 [NCBI36] Chr2:2q34-36.3 |
pathogenic |
NM_007127.2(VIL1):c.321C>T (p.Phe107=) | single nucleotide variant | Malignant melanoma [RCV000065417] | Chr2:218425785 [GRCh38] Chr2:219290508 [GRCh37] Chr2:218998752 [NCBI36] Chr2:2q35 |
not provided |
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 | copy number gain | See cases [RCV000135934] | Chr2:210579676..242126245 [GRCh38] Chr2:211444400..243059659 [GRCh37] Chr2:211152645..242717069 [NCBI36] Chr2:2q34-37.3 |
pathogenic |
GRCh38/hg38 2q31.3-36.2(chr2:180513793-224302848)x3 | copy number gain | See cases [RCV000139446] | Chr2:180513793..224302848 [GRCh38] Chr2:181378520..225167565 [GRCh37] Chr2:181086765..224875809 [NCBI36] Chr2:2q31.3-36.2 |
pathogenic |
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 | copy number gain | See cases [RCV000142307] | Chr2:189436149..241841232 [GRCh38] Chr2:190300875..242783384 [GRCh37] Chr2:190009120..242432057 [NCBI36] Chr2:2q32.2-37.3 |
pathogenic |
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 | copy number gain | See cases [RCV000143216] | Chr2:218101759..242126245 [GRCh38] Chr2:218966482..243059659 [GRCh37] Chr2:218674727..242717069 [NCBI36] Chr2:2q35-37.3 |
pathogenic |
GRCh37/hg19 2q35(chr2:219221864-219423299)x3 | copy number gain | Breast ductal adenocarcinoma [RCV000207108] | Chr2:219221864..219423299 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2q35-36.3(chr2:217374144-227643620)x1 | copy number loss | not provided [RCV000585275] | Chr2:217374144..227643620 [GRCh37] Chr2:2q35-36.3 |
likely pathogenic |
NM_007127.3(VIL1):c.684C>A (p.His228Gln) | single nucleotide variant | not provided [RCV004711046]|not specified [RCV000432970] | Chr2:218429401 [GRCh38] Chr2:219294124 [GRCh37] Chr2:2q35 |
likely benign |
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) | copy number gain | See cases [RCV000512056] | Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3 |
pathogenic |
GRCh37/hg19 2q34-37.3(chr2:213518431-242783384)x3 | copy number gain | See cases [RCV000512009] | Chr2:213518431..242783384 [GRCh37] Chr2:2q34-37.3 |
pathogenic |
GRCh37/hg19 2q35(chr2:219275536-220266647)x3 | copy number gain | See cases [RCV000511655] | Chr2:219275536..220266647 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 | copy number gain | See cases [RCV000511212] | Chr2:12771..242783384 [GRCh37] Chr2:2p25.3-q37.3 |
pathogenic |
NM_007127.3(VIL1):c.14G>T (p.Ser5Ile) | single nucleotide variant | not specified [RCV004310880] | Chr2:218423792 [GRCh38] Chr2:219288515 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1514G>A (p.Arg505Gln) | single nucleotide variant | VIL1-related disorder [RCV003918100]|not provided [RCV000658900] | Chr2:218434539 [GRCh38] Chr2:219299262 [GRCh37] Chr2:2q35 |
benign|uncertain significance |
GRCh37/hg19 2q35(chr2:219139778-219368933)x3 | copy number gain | not provided [RCV000682039] | Chr2:219139778..219368933 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2q35-37.3(chr2:219225872-242016876)x3 | copy number gain | not provided [RCV000682170] | Chr2:219225872..242016876 [GRCh37] Chr2:2q35-37.3 |
pathogenic |
GRCh37/hg19 2q35-36.3(chr2:218813434-227450699)x1 | copy number loss | not provided [RCV000682163] | Chr2:218813434..227450699 [GRCh37] Chr2:2q35-36.3 |
pathogenic |
NC_000002.11:g.(?_219135239)_(220290732_?)del | deletion | Desmin-related myofibrillar myopathy [RCV000707774] | Chr2:219135239..220290732 [GRCh37] Chr2:2q35 |
pathogenic |
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 | copy number gain | not provided [RCV000752802] | Chr2:14238..243048760 [GRCh37] Chr2:2p25.3-q37.3 |
pathogenic |
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 | copy number gain | not provided [RCV000752804] | Chr2:15672..243101834 [GRCh37] Chr2:2p25.3-q37.3 |
pathogenic |
GRCh37/hg19 2q34-37.3(chr2:210779657-239879183)x3 | copy number gain | See cases [RCV000790568] | Chr2:210779657..239879183 [GRCh37] Chr2:2q34-37.3 |
pathogenic |
NM_007127.3(VIL1):c.2019C>T (p.Ala673=) | single nucleotide variant | not provided [RCV000967983] | Chr2:218437171 [GRCh38] Chr2:219301894 [GRCh37] Chr2:2q35 |
benign |
NM_007127.3(VIL1):c.772G>C (p.Val258Leu) | single nucleotide variant | not provided [RCV000964626] | Chr2:218429598 [GRCh38] Chr2:219294321 [GRCh37] Chr2:2q35 |
benign |
NM_007127.3(VIL1):c.1779C>A (p.Asn593Lys) | single nucleotide variant | not provided [RCV000964627] | Chr2:218435387 [GRCh38] Chr2:219300110 [GRCh37] Chr2:2q35 |
benign |
NM_007127.3(VIL1):c.361G>T (p.Gly121Cys) | single nucleotide variant | not specified [RCV004291358] | Chr2:218427978 [GRCh38] Chr2:219292701 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2q35(chr2:218271898-219825640) | copy number gain | not provided [RCV000767784] | Chr2:218271898..219825640 [GRCh37] Chr2:2q35 |
likely pathogenic |
Single allele | duplication | Neurodevelopmental disorder [RCV000787403] | Chr2:188926928..225298653 [GRCh37] Chr2:2q32.1-36.2 |
pathogenic |
NM_007127.3(VIL1):c.1888C>T (p.Arg630Cys) | single nucleotide variant | not provided [RCV000964719] | Chr2:218436543 [GRCh38] Chr2:219301266 [GRCh37] Chr2:2q35 |
benign |
GRCh37/hg19 2q35(chr2:216883237-220953003)x3 | copy number gain | not provided [RCV001007510] | Chr2:216883237..220953003 [GRCh37] Chr2:2q35 |
pathogenic |
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) | copy number gain | Mosaic trisomy 2 [RCV002280628] | Chr2:1..243199373 [GRCh37] Chr2:2p25.3-q37.3 |
pathogenic |
GRCh37/hg19 2q34-35(chr2:215122019-220397907)x1 | copy number loss | not provided [RCV001259180] | Chr2:215122019..220397907 [GRCh37] Chr2:2q34-35 |
likely pathogenic |
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 | copy number gain | See cases [RCV001263052] | Chr2:178397959..243007457 [GRCh37] Chr2:2q31.2-37.3 |
pathogenic |
GRCh37/hg19 2q34-36.1(chr2:215108009-221679980) | copy number gain | not specified [RCV002053282] | Chr2:215108009..221679980 [GRCh37] Chr2:2q34-36.1 |
pathogenic |
GRCh37/hg19 2q35(chr2:218210665-220141650) | copy number gain | not specified [RCV002053284] | Chr2:218210665..220141650 [GRCh37] Chr2:2q35 |
uncertain significance |
NC_000002.11:g.(?_218999525)_(220435954_?)dup | duplication | Alacrima, achalasia, and intellectual disability syndrome [RCV001955103]|Paroxysmal nonkinesigenic dyskinesia [RCV001962531] | Chr2:218999525..220435954 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.718G>A (p.Val240Met) | single nucleotide variant | not specified [RCV004304603] | Chr2:218429435 [GRCh38] Chr2:219294158 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.419T>C (p.Leu140Pro) | single nucleotide variant | not specified [RCV004239787] | Chr2:218428036 [GRCh38] Chr2:219292759 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2179G>C (p.Asp727His) | single nucleotide variant | not specified [RCV004183913] | Chr2:218438676 [GRCh38] Chr2:219303399 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.485G>A (p.Arg162Gln) | single nucleotide variant | not specified [RCV004091126] | Chr2:218428255 [GRCh38] Chr2:219292978 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.599A>G (p.Gln200Arg) | single nucleotide variant | not specified [RCV004147524] | Chr2:218429316 [GRCh38] Chr2:219294039 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.296T>C (p.Val99Ala) | single nucleotide variant | not specified [RCV004199113] | Chr2:218425760 [GRCh38] Chr2:219290483 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1156G>A (p.Val386Met) | single nucleotide variant | not specified [RCV004193103] | Chr2:218431910 [GRCh38] Chr2:219296633 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.516G>T (p.Lys172Asn) | single nucleotide variant | not specified [RCV004184336] | Chr2:218428286 [GRCh38] Chr2:219293009 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.682C>T (p.His228Tyr) | single nucleotide variant | not specified [RCV004172270] | Chr2:218429399 [GRCh38] Chr2:219294122 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1396C>G (p.Leu466Val) | single nucleotide variant | not specified [RCV004148358] | Chr2:218432847 [GRCh38] Chr2:219297570 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1247A>G (p.Lys416Arg) | single nucleotide variant | not specified [RCV004213373] | Chr2:218432089 [GRCh38] Chr2:219296812 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.104G>A (p.Ser35Asn) | single nucleotide variant | not specified [RCV004099780] | Chr2:218424305 [GRCh38] Chr2:219289028 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.908C>T (p.Ala303Val) | single nucleotide variant | not specified [RCV004161418] | Chr2:218429907 [GRCh38] Chr2:219294630 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1735C>T (p.Arg579Trp) | single nucleotide variant | not specified [RCV004182757] | Chr2:218435343 [GRCh38] Chr2:219300066 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.724G>A (p.Asp242Asn) | single nucleotide variant | not specified [RCV004188487] | Chr2:218429441 [GRCh38] Chr2:219294164 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1211G>A (p.Arg404His) | single nucleotide variant | not specified [RCV004599576] | Chr2:218432053 [GRCh38] Chr2:219296776 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2441G>A (p.Arg814Gln) | single nucleotide variant | not specified [RCV004093544] | Chr2:218449293 [GRCh38] Chr2:219314016 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2405T>C (p.Phe802Ser) | single nucleotide variant | not specified [RCV004174554] | Chr2:218449257 [GRCh38] Chr2:219313980 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1700G>A (p.Arg567Gln) | single nucleotide variant | not specified [RCV004196494] | Chr2:218435308 [GRCh38] Chr2:219300031 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1805C>A (p.Ala602Asp) | single nucleotide variant | not specified [RCV004238605] | Chr2:218435413 [GRCh38] Chr2:219300136 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.659C>T (p.Pro220Leu) | single nucleotide variant | not specified [RCV004221974] | Chr2:218429376 [GRCh38] Chr2:219294099 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1021G>A (p.Val341Ile) | single nucleotide variant | not specified [RCV004221009] | Chr2:218430797 [GRCh38] Chr2:219295520 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.605G>A (p.Arg202Gln) | single nucleotide variant | not specified [RCV004222621] | Chr2:218429322 [GRCh38] Chr2:219294045 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.593G>A (p.Arg198Gln) | single nucleotide variant | not specified [RCV004074567] | Chr2:218429310 [GRCh38] Chr2:219294033 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2093T>C (p.Val698Ala) | single nucleotide variant | not specified [RCV004259250] | Chr2:218437245 [GRCh38] Chr2:219301968 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1441A>G (p.Met481Val) | single nucleotide variant | not specified [RCV004268580] | Chr2:218432892 [GRCh38] Chr2:219297615 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.939C>A (p.Ser313Arg) | single nucleotide variant | not specified [RCV004267163] | Chr2:218429938 [GRCh38] Chr2:219294661 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.493G>A (p.Val165Ile) | single nucleotide variant | not specified [RCV004256131] | Chr2:218428263 [GRCh38] Chr2:219292986 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2q32.1-36.1(chr2:186698504-223918111)x3 | copy number gain | See cases [RCV003329558] | Chr2:186698504..223918111 [GRCh37] Chr2:2q32.1-36.1 |
pathogenic |
NM_007127.3(VIL1):c.1580A>C (p.Asn527Thr) | single nucleotide variant | not specified [RCV004334691] | Chr2:218434605 [GRCh38] Chr2:219299328 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.985C>A (p.Gln329Lys) | single nucleotide variant | not specified [RCV004334854] | Chr2:218430761 [GRCh38] Chr2:219295484 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.932C>G (p.Ala311Gly) | single nucleotide variant | not specified [RCV004348860] | Chr2:218429931 [GRCh38] Chr2:219294654 [GRCh37] Chr2:2q35 |
uncertain significance |
GRCh37/hg19 2q35-37.3(chr2:218376403-242783384)x3 | copy number gain | not provided [RCV003484087] | Chr2:218376403..242783384 [GRCh37] Chr2:2q35-37.3 |
pathogenic |
GRCh37/hg19 2q35-37.3(chr2:216815496-242782258)x3 | copy number gain | See cases [RCV004442836] | Chr2:216815496..242782258 [GRCh37] Chr2:2q35-37.3 |
pathogenic |
NM_007127.3(VIL1):c.1329C>T (p.Leu443=) | single nucleotide variant | VIL1-related disorder [RCV003952081] | Chr2:218432171 [GRCh38] Chr2:219296894 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.948+3A>T | single nucleotide variant | VIL1-related disorder [RCV003916818] | Chr2:218429950 [GRCh38] Chr2:219294673 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.274C>T (p.Arg92Trp) | single nucleotide variant | VIL1-related disorder [RCV003911697] | Chr2:218425738 [GRCh38] Chr2:219290461 [GRCh37] Chr2:2q35 |
benign |
NM_007127.3(VIL1):c.75+8C>G | single nucleotide variant | VIL1-related disorder [RCV003924165] | Chr2:218423861 [GRCh38] Chr2:219288584 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.16G>A (p.Ala6Thr) | single nucleotide variant | VIL1-related disorder [RCV003961531] | Chr2:218423794 [GRCh38] Chr2:219288517 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.2229+8C>T | single nucleotide variant | VIL1-related disorder [RCV003924578]|not provided [RCV004711984] | Chr2:218438734 [GRCh38] Chr2:219303457 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.128G>A (p.Gly43Asp) | single nucleotide variant | VIL1-related disorder [RCV003962182] | Chr2:218424329 [GRCh38] Chr2:219289052 [GRCh37] Chr2:2q35 |
benign |
NM_007127.3(VIL1):c.568-3C>T | single nucleotide variant | VIL1-related disorder [RCV003961669] | Chr2:218429282 [GRCh38] Chr2:219294005 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.1849A>G (p.Ile617Val) | single nucleotide variant | VIL1-related disorder [RCV003933841] | Chr2:218436504 [GRCh38] Chr2:219301227 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.1200G>A (p.Val400=) | single nucleotide variant | VIL1-related disorder [RCV003914386] | Chr2:218431954 [GRCh38] Chr2:219296677 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.1473C>T (p.Ile491=) | single nucleotide variant | VIL1-related disorder [RCV003969223] | Chr2:218432924 [GRCh38] Chr2:219297647 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.1051G>A (p.Ala351Thr) | single nucleotide variant | not specified [RCV004482424] | Chr2:218430827 [GRCh38] Chr2:219295550 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1052C>T (p.Ala351Val) | single nucleotide variant | not specified [RCV004482425] | Chr2:218430828 [GRCh38] Chr2:219295551 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.1221C>A (p.Asn407Lys) | single nucleotide variant | not specified [RCV004482426] | Chr2:218432063 [GRCh38] Chr2:219296786 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1249T>C (p.Trp417Arg) | single nucleotide variant | not specified [RCV004482427] | Chr2:218432091 [GRCh38] Chr2:219296814 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1642C>A (p.Leu548Ile) | single nucleotide variant | not specified [RCV004482428] | Chr2:218434667 [GRCh38] Chr2:219299390 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1820C>T (p.Thr607Ile) | single nucleotide variant | not specified [RCV004482429] | Chr2:218435428 [GRCh38] Chr2:219300151 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2081C>G (p.Pro694Arg) | single nucleotide variant | not specified [RCV004482431] | Chr2:218437233 [GRCh38] Chr2:219301956 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.352C>T (p.Arg118Trp) | single nucleotide variant | not specified [RCV004482435] | Chr2:218427969 [GRCh38] Chr2:219292692 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.659C>G (p.Pro220Arg) | single nucleotide variant | not specified [RCV004482437] | Chr2:218429376 [GRCh38] Chr2:219294099 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.749A>G (p.Lys250Arg) | single nucleotide variant | not specified [RCV004482438] | Chr2:218429466 [GRCh38] Chr2:219294189 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.755C>T (p.Ala252Val) | single nucleotide variant | not specified [RCV004482439] | Chr2:218429472 [GRCh38] Chr2:219294195 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2227G>A (p.Ala743Thr) | single nucleotide variant | not specified [RCV004482433] | Chr2:218438724 [GRCh38] Chr2:219303447 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.183C>A (p.Asp61Glu) | single nucleotide variant | not specified [RCV004482430] | Chr2:218425647 [GRCh38] Chr2:219290370 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2106C>T (p.His702=) | single nucleotide variant | not specified [RCV004482432] | Chr2:218437258 [GRCh38] Chr2:219301981 [GRCh37] Chr2:2q35 |
likely benign |
NM_007127.3(VIL1):c.275G>A (p.Arg92Gln) | single nucleotide variant | not specified [RCV004482434] | Chr2:218425739 [GRCh38] Chr2:219290462 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1714A>G (p.Met572Val) | single nucleotide variant | not specified [RCV004681034] | Chr2:218435322 [GRCh38] Chr2:219300045 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1204G>C (p.Val402Leu) | single nucleotide variant | not specified [RCV004681035] | Chr2:218432046 [GRCh38] Chr2:219296769 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1108G>T (p.Val370Leu) | single nucleotide variant | not specified [RCV004681036] | Chr2:218431862 [GRCh38] Chr2:219296585 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2296A>G (p.Ile766Val) | single nucleotide variant | not specified [RCV004681037] | Chr2:218440788 [GRCh38] Chr2:219305511 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.1123T>G (p.Phe375Val) | single nucleotide variant | not specified [RCV004688624] | Chr2:218431877 [GRCh38] Chr2:219296600 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.2115dup (p.Thr706fs) | duplication | VIL1-related disorder [RCV004758319] | Chr2:218437261..218437262 [GRCh38] Chr2:219301984..219301985 [GRCh37] Chr2:2q35 |
uncertain significance |
NM_007127.3(VIL1):c.241T>C (p.Tyr81His) | single nucleotide variant | VIL1-related disorder [RCV004730664] | Chr2:218425705 [GRCh38] Chr2:219290428 [GRCh37] Chr2:2q35 |
uncertain significance |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
GDB:542905 |
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VIL1_8718 |
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D2S2722 |
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adipose tissue
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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entire extraembryonic component
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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963 | 2330 | 2475 | 1883 | 3800 | 1431 | 2015 | 4 | 589 | 1624 | 461 | 1997 | 6317 | 5369 | 29 | 2656 | 702 | 1539 | 1318 | 136 |
RefSeq Transcripts | NM_007127 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | A07400 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
A14103 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC021016 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AC073838 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK223398 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK300965 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK313709 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC017303 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BP329402 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471063 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CP068276 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CS223375 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X04657 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X12901 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
X71058 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENST00000248444 ⟹ ENSP00000248444 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Ensembl Acc Id: | ENST00000392114 ⟹ ENSP00000375962 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Ensembl Acc Id: | ENST00000419986 ⟹ ENSP00000394030 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Ensembl Acc Id: | ENST00000440053 ⟹ ENSP00000409270 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Ensembl Acc Id: | ENST00000454069 ⟹ ENSP00000412657 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_007127 ⟹ NP_009058 | ||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
Protein RefSeqs | NP_009058 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAH17303 | (Get FASTA) | NCBI Sequence Viewer |
AAY14886 | (Get FASTA) | NCBI Sequence Viewer | |
BAD97118 | (Get FASTA) | NCBI Sequence Viewer | |
BAG36454 | (Get FASTA) | NCBI Sequence Viewer | |
BAG62590 | (Get FASTA) | NCBI Sequence Viewer | |
CAA00664 | (Get FASTA) | NCBI Sequence Viewer | |
CAA01148 | (Get FASTA) | NCBI Sequence Viewer | |
CAA28355 | (Get FASTA) | NCBI Sequence Viewer | |
CAA31386 | (Get FASTA) | NCBI Sequence Viewer | |
CAA50375 | (Get FASTA) | NCBI Sequence Viewer | |
CAJ46927 | (Get FASTA) | NCBI Sequence Viewer | |
EAW70619 | (Get FASTA) | NCBI Sequence Viewer | |
EAW70620 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSP00000248444 | ||
ENSP00000248444.5 | |||
ENSP00000375962.2 | |||
ENSP00000394030.1 | |||
ENSP00000409270.1 | |||
ENSP00000412657.1 | |||
GenBank Protein | P09327 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_009058 ⟸ NM_007127 |
- UniProtKB: | Q53S11 (UniProtKB/Swiss-Prot), B2R9A7 (UniProtKB/Swiss-Prot), Q96AC8 (UniProtKB/Swiss-Prot), P09327 (UniProtKB/Swiss-Prot), Q53F91 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSP00000412657 ⟸ ENST00000454069 |
Ensembl Acc Id: | ENSP00000409270 ⟸ ENST00000440053 |
Ensembl Acc Id: | ENSP00000394030 ⟸ ENST00000419986 |
Ensembl Acc Id: | ENSP00000248444 ⟸ ENST00000248444 |
Ensembl Acc Id: | ENSP00000375962 ⟸ ENST00000392114 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P09327-F1-model_v2 | AlphaFold | P09327 | 1-827 | view protein structure |
RGD ID: | 6862816 | ||||||||
Promoter ID: | EPDNEW_H4573 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | VIL1_1 | ||||||||
Description: | villin 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H4574 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6862818 | ||||||||
Promoter ID: | EPDNEW_H4574 | ||||||||
Type: | initiation region | ||||||||
Name: | VIL1_2 | ||||||||
Description: | villin 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H4573 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | HGNC:12690 | AgrOrtholog |
COSMIC | VIL1 | COSMIC |
Ensembl Genes | ENSG00000127831 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENST00000248444 | ENTREZGENE |
ENST00000248444.10 | UniProtKB/Swiss-Prot | |
ENST00000392114.6 | UniProtKB/TrEMBL | |
ENST00000419986.1 | UniProtKB/TrEMBL | |
ENST00000440053.1 | UniProtKB/Swiss-Prot | |
ENST00000454069.5 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.950.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.40.20.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
GTEx | ENSG00000127831 | GTEx |
HGNC ID | HGNC:12690 | ENTREZGENE |
Human Proteome Map | VIL1 | Human Proteome Map |
InterPro | ADF-H/Gelsolin-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Gelsolin-like_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Gelsolin-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Villin/Gelsolin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Villin_headpiece | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Villin_headpiece_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:7429 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
NCBI Gene | 7429 | ENTREZGENE |
OMIM | 193040 | OMIM |
PANTHER | PTHR11977 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PTHR11977:SF35 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Gelsolin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
VHP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PharmGKB | PA37309 | PharmGKB |
PRINTS | GELSOLIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PROSITE | PS51089 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SMART | GEL | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
VHP | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | Actin depolymerizing proteins | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF47050 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SSF82754 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniProt | B2R9A7 | ENTREZGENE |
B4DV78_HUMAN | UniProtKB/TrEMBL | |
C9J2B5_HUMAN | UniProtKB/TrEMBL | |
H7C0B6_HUMAN | UniProtKB/TrEMBL | |
P09327 | ENTREZGENE | |
Q53F91 | ENTREZGENE, UniProtKB/TrEMBL | |
Q53S11 | ENTREZGENE | |
Q96AC8 | ENTREZGENE | |
VILI_HUMAN | UniProtKB/Swiss-Prot | |
UniProt Secondary | B2R9A7 | UniProtKB/Swiss-Prot |
Q53S11 | UniProtKB/Swiss-Prot | |
Q96AC8 | UniProtKB/Swiss-Prot |