Vil1 (villin 1) - Rat Genome Database

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Gene: Vil1 (villin 1) Ictidomys tridecemlineatus
Analyze
Symbol: Vil1
Name: villin 1
RGD ID: 12495424
Description: ENCODES a protein that exhibits actin filament binding (ortholog); calcium ion binding (ortholog); cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); INVOLVED IN actin filament capping (ortholog); actin filament depolymerization (ortholog); actin filament polymerization (ortholog); ASSOCIATED WITH cholestasis (ortholog); myofibrillar myopathy 1 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN actin filament bundle (ortholog); brush border (ortholog); filopodium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: villin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,571,737 - 174,595,717 (+)NCBI
SpeTri2.0NW_004936569914,511 - 938,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Vil1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303174,571,737 - 174,595,717 (+)NCBI
SpeTri2.0NW_004936569914,511 - 938,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VIL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2218,419,121 - 218,453,295 (+)EnsemblGRCh38hg38GRCh38
GRCh382218,419,123 - 218,453,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372219,283,846 - 219,318,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362218,996,722 - 219,022,489 (+)NCBINCBI36hg18NCBI36
Build 342219,113,984 - 219,139,746NCBI
Celera2213,050,445 - 213,080,856 (+)NCBI
Cytogenetic Map2q35NCBI
HuRef2211,136,728 - 211,167,137 (+)NCBIHuRef
CHM1_12219,290,456 - 219,320,861 (+)NCBICHM1_1
Vil1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39174,448,543 - 74,474,719 (+)NCBIGRCm39mm39
GRCm39 Ensembl174,448,535 - 74,474,718 (+)Ensembl
GRCm38174,409,384 - 74,435,560 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl174,409,376 - 74,435,559 (+)EnsemblGRCm38mm10GRCm38
MGSCv37174,455,958 - 74,482,134 (+)NCBIGRCm37mm9NCBIm37
MGSCv36174,342,613 - 74,368,721 (+)NCBImm8
Celera174,966,841 - 74,993,216 (+)NCBICelera
Cytogenetic Map1C3NCBI
cM Map138.54NCBI
Vil1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2975,991,141 - 76,018,860 (+)NCBI
Rnor_6.0 Ensembl981,689,802 - 81,717,621 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0981,689,802 - 81,717,623 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0981,454,351 - 81,482,172 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4973,748,632 - 73,776,347 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1973,895,763 - 73,923,376 (+)NCBI
Celera973,564,428 - 73,592,138 (+)NCBICelera
Cytogenetic Map9q33NCBI
Vil1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,935,456 - 14,961,011 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,935,450 - 14,961,011 (-)NCBIChiLan1.0ChiLan1.0
VIL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B224,274,548 - 224,304,550 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B224,274,548 - 224,304,550 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B105,677,371 - 105,711,293 (+)NCBIMhudiblu_PPA_v0panPan3
VIL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,065,887 - 25,090,238 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,065,180 - 25,090,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3725,885,686 - 25,911,804 (+)NCBI
ROS_Cfam_1.03725,081,617 - 25,107,747 (+)NCBI
UMICH_Zoey_3.13724,986,923 - 25,013,216 (+)NCBI
UNSW_CanFamBas_1.03724,920,579 - 24,946,677 (+)NCBI
UU_Cfam_GSD_1.03724,940,950 - 24,966,867 (+)NCBI
VIL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15120,463,566 - 120,492,580 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115120,463,470 - 120,494,772 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215133,479,112 - 133,508,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VIL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110104,311,048 - 104,350,846 (+)NCBI
ChlSab1.1 Ensembl10104,320,074 - 104,347,289 (+)Ensembl
Vero_WHO_p1.0NW_02366604095,055,245 - 95,084,515 (-)NCBI
Vil1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248236,567,107 - 6,593,258 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005330468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005330468   ⟹   XP_005330525
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405303174,571,737 - 174,595,717 (+)NCBI
SpeTri2.0NW_004936569914,511 - 938,481 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005330525 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3275227 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005330525   ⟸   XM_005330468
- UniProtKB: I3MSG2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
HP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026327 ENTREZGENE
Ensembl Protein ENSSTOP00000015057 ENTREZGENE
NCBI Gene Vil1 ENTREZGENE
UniProt I3MSG2 ENTREZGENE