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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Vil1 | Rat | cholestasis | | ISO | VIL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Vil1 | Rat | cholestasis | | ISO | VIL1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:27989131 | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from GOA human gene data--August 2006 | GOA data from the GO Consortium |
3. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
4. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
6. | Comprehensive gene review and curation | RGD comprehensive gene curation |
PMID:11500485 | PMID:12477932 | PMID:12937273 | PMID:14594952 | PMID:15096633 | PMID:15272027 | PMID:15342783 | PMID:16008578 | PMID:16921170 | PMID:17182858 | PMID:17229814 | PMID:17606613 |
PMID:18054784 | PMID:18198174 | PMID:19056867 | PMID:19808673 | PMID:21492153 | PMID:21606356 | PMID:22114352 | PMID:23376485 | PMID:25002582 | PMID:28704336 |
Vil1 (Rattus norvegicus - Norway rat) |
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VIL1 (Homo sapiens - human) |
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Vil1 (Mus musculus - house mouse) |
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Vil1 (Chinchilla lanigera - long-tailed chinchilla) |
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VIL1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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VIL1 (Canis lupus familiaris - dog) |
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Vil1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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VIL1 (Sus scrofa - pig) |
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VIL1 (Chlorocebus sabaeus - green monkey) |
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Vil1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Vil1
111 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129981 |
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RH133743 |
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D9Mco100 |
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GDB:542905 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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16 | 6 | 63 | 126 | 90 | 89 | 58 | 60 | 58 | 5 | 308 | 150 | 10 | 106 | 81 | 92 | 31 | 9 | 9 |
RefSeq Transcripts | NM_001108224 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | BC168981 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH474004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000009 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000021432 ⟹ ENSRNOP00000021432 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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RefSeq Acc Id: | NM_001108224 ⟹ NP_001101694 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001101694 | (Get FASTA) | NCBI Sequence Viewer |
GenBank Protein | AAI68981 | (Get FASTA) | NCBI Sequence Viewer |
EDL75355 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000021432 | ||
ENSRNOP00000021432.4 |
RefSeq Acc Id: | NP_001101694 ⟸ NM_001108224 |
- UniProtKB: | B5DFA0 (UniProtKB/TrEMBL), A6JVU7 (UniProtKB/TrEMBL), F7F8Y1 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000021432 ⟸ ENSRNOT00000021432 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-B5DFA0-F1-model_v2 | AlphaFold | B5DFA0 | 1-827 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13696753 | ||||||||
Promoter ID: | EPDNEW_R7277 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Vil1_1 | ||||||||
Description: | villin 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1307048 | AgrOrtholog |
BioCyc Gene | G2FUF-27132 | BioCyc |
Ensembl Genes | ENSRNOG00000015408 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000021432 | ENTREZGENE |
ENSRNOT00000021432.6 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.950.10 | UniProtKB/TrEMBL |
3.40.20.10 | UniProtKB/TrEMBL | |
InterPro | ADF-H/Gelsolin-like_dom | UniProtKB/TrEMBL |
Gelsolin | UniProtKB/TrEMBL | |
Gelsolin-like_dom_sf | UniProtKB/TrEMBL | |
Gelsolin_dom | UniProtKB/TrEMBL | |
Villin_headpiece | UniProtKB/TrEMBL | |
Villin_headpiece_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:316521 | UniProtKB/TrEMBL |
NCBI Gene | 316521 | ENTREZGENE |
PANTHER | Gelsolin | UniProtKB/TrEMBL |
PTHR11977:SF35 | UniProtKB/TrEMBL | |
Pfam | Gelsolin | UniProtKB/TrEMBL |
VHP | UniProtKB/TrEMBL | |
PhenoGen | Vil1 | PhenoGen |
PRINTS | GELSOLIN | UniProtKB/TrEMBL |
PROSITE | PS51089 | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000015408 | RatGTEx |
SMART | GEL | UniProtKB/TrEMBL |
VHP | UniProtKB/TrEMBL | |
Superfamily-SCOP | Actin depolymerizing proteins | UniProtKB/TrEMBL |
SSF82754 | UniProtKB/TrEMBL | |
VHP | UniProtKB/TrEMBL | |
UniProt | A6JVU7 | ENTREZGENE, UniProtKB/TrEMBL |
B5DFA0 | ENTREZGENE | |
F7F8Y1 | ENTREZGENE, UniProtKB/TrEMBL | |
UniProt Secondary | B5DFA0 | UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2008-04-30 | Vil1 | villin 1 | Vil1_predicted | villin 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2006-03-30 | Vil1_predicted | villin 1 (predicted) | Vil_predicted | villin (predicted) | Symbol and Name updated | 1299863 | APPROVED |
2005-01-12 | Vil_predicted | villin (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |