Gca (grancalcin) - Rat Genome Database

Name: Gca
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Gca (grancalcin) Mus musculus

Analyze

Symbol:

Gca

Name:

grancalcin

RGD ID:

1315292

MGI Page

MGI

Description:

Predicted to enable calcium ion binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be located in cytosol and plasma membrane. Is expressed in cerebral cortex ventricular layer and telencephalon ventricular layer. Orthologous to human GCA (grancalcin).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

5133401E04Rik; AI573844

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCA (grancalcin)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Gca (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gca (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCA (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCA (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gca (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCA (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCA (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gca (grancalcin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Gca (grancalcin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GCA (grancalcin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:92027	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	gca	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	62,494,671 - 62,524,453 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	62,494,629 - 62,524,453 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	62,664,327 - 62,694,109 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	62,664,285 - 62,694,109 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	62,502,384 - 62,532,166 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	62,465,166 - 62,494,948 (+)	NCBI		MGSCv36	mm8
Celera	2	64,354,587 - 64,386,731 (+)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	36.47	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (EXP,ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

benzo[a]pyrene (EXP,ISO)

Benzo[ghi]perylene (EXP)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dicrotophos (ISO)

diquat (EXP)

diuron (ISO)

entinostat (ISO)

ethyl methanesulfonate (ISO)

furan (ISO)

genistein (ISO)

gold atom (ISO)

gold(0) (ISO)

isoflavones (ISO)

ivermectin (ISO)

ketamine (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

pentachlorophenol (EXP)

perfluorohexanesulfonic acid (EXP)

phenobarbital (EXP,ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

propiconazole (EXP)

quercetin (ISO)

silicon dioxide (ISO)

silver atom (EXP)

silver(0) (EXP)

sodium arsenite (ISO)

sodium dichromate (ISO)

succimer (ISO)

tamibarotene (ISO)

tamoxifen (EXP)

thioacetamide (ISO)

topotecan (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IEA)

cytosol (ISO,TAS)

membrane (IEA)

plasma membrane (ISO)

Molecular Function

calcium ion binding (IBA,ISO)

metal ion binding (IEA)

protein binding (ISO)

protein heterodimerization activity (ISO)

protein homodimerization activity (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

decreased susceptibility to endotoxin shock (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional annotation of a full-length mouse cDNA collection.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2.	MGDs mouse GO annotations	MGD data from the GO Consortium
3.	MGD IEA	MGD IEA
4.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:10512203	PMID:11042159	PMID:11076861	PMID:12477932	PMID:12520002	PMID:12529388	PMID:15118320	PMID:15489334	PMID:15840001	PMID:16141072	PMID:16141073
PMID:16934789	PMID:16954401	PMID:21267068	PMID:21873635	PMID:34321999	PMID:34614408	PMID:38167327

Genomics

Comparative Map Data

Gca
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	62,494,671 - 62,524,453 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	62,494,629 - 62,524,453 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	62,664,327 - 62,694,109 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	62,664,285 - 62,694,109 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	62,502,384 - 62,532,166 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	62,465,166 - 62,494,948 (+)	NCBI		MGSCv36	mm8
Celera	2	64,354,587 - 64,386,731 (+)	NCBI		Celera
Cytogenetic Map	2	C1.3	NCBI
cM Map	2	36.47	NCBI

GCA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	162,318,763 - 162,375,396 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	162,318,840 - 162,371,595 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	163,175,273 - 163,219,633 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	162,908,896 - 162,925,875 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	163,026,156 - 163,043,136	NCBI
Celera	2	156,810,897 - 156,829,481 (+)	NCBI		Celera
Cytogenetic Map	2	q24.2	NCBI
HuRef	2	155,082,887 - 155,101,451 (+)	NCBI		HuRef
CHM1_1	2	163,206,468 - 163,225,034 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	162,775,430 - 162,833,885 (+)	NCBI		T2T-CHM13v2.0

Gca
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	67,705,874 - 67,738,475 (+)	NCBI		GRCr8
mRatBN7.2	3	47,297,320 - 47,329,913 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	47,297,383 - 47,328,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	50,652,068 - 50,684,657 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	59,235,600 - 59,268,188 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	57,008,777 - 57,041,316 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	48,625,965 - 48,661,317 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	48,626,038 - 48,661,317 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	55,291,465 - 55,326,008 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	44,616,037 - 44,648,897 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	44,512,448 - 44,541,386 (+)	NCBI
Celera	3	46,938,285 - 46,969,570 (+)	NCBI		Celera
Cytogenetic Map	3	q21	NCBI

Gca
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955449	11,504,058 - 11,522,661 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955449	11,503,201 - 11,538,809 (-)	NCBI	ChiLan1.0	ChiLan1.0

GCA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	65,010,804 - 65,054,157 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	65,025,747 - 65,069,132 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	49,612,156 - 49,657,114 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	166,980,348 - 167,023,578 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	167,005,108 - 167,023,581 (+)	Ensembl	panpan1.1		panPan2

GCA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	36	7,727,578 - 7,780,439 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	36	7,749,191 - 7,778,968 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	36	7,871,005 - 7,924,587 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	36	7,859,231 - 7,913,061 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	36	7,880,907 - 7,913,800 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	36	7,877,439 - 7,931,219 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	36	7,918,593 - 7,972,227 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	36	8,026,108 - 8,079,928 (+)	NCBI		UU_Cfam_GSD_1.0

Gca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	124,914,685 - 124,942,542 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	16,686,192 - 16,703,109 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	16,675,897 - 16,703,024 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	68,985,328 - 69,054,052 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	69,015,230 - 69,054,057 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	76,511,222 - 76,544,884 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GCA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	47,732,741 - 47,777,928 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	47,757,459 - 47,775,055 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	151,755,186 - 151,800,283 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gca
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	3,160,488 - 3,180,391 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	3,130,440 - 3,193,853 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gca
736 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	812
Count of miRNA genes:	467
Interacting mature miRNAs:	568
Transcripts:	ENSMUST00000028257, ENSMUST00000148083
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1301769	Orgwq2_m	organ weight QTL 2 (mouse)			Not determined		2	3887126	93421651	Mouse
8552707	Cia23_m	collagen induced arthritis QTL 23 (mouse)			Not determined		2	12129537	66556453	Mouse
1357881	Estoq1_m	embryo survival total QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357454	Kidq1_m	kidney weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357436	Splq1_m	spleen weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
39128209	Lwq14_m	liver weight QTL 14 (mouse)					2	20897778	118894840	Mouse
1558899	Egq1_m	early growth QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558966	W10q9_m	weight 10 weeks QTL 9 (mouse)			Not determined		2	20897778	118894840	Mouse
1558915	W3q1_m	weight 3 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1558738	W6q1_m	weight 6 weeks QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1357681	Hrtq1_m	heart weight QTL 1 (mouse)			Not determined		2	20897778	118894840	Mouse
1302174	Dssc2_m	dextran sodium sulfate induced colitis QTL2 (mouse)			Not determined		2	24224632	148700377	Mouse
1300577	Capsq1_m	capsaicin sensitivity related QTL 1 (mouse)			Not determined		2	27602060	84013384	Mouse
14746979	Manh51_m	mandible shape 51 (mouse)					2	28961129	62961129	Mouse
14746997	Mancz2_m	mandible centroid size 2 (mouse)					2	28961129	62961129	Mouse
4141854	T2dm2sa_m	type 2 diabetes mellitus 2 in SMXA RI mice (mouse)			Not determined		2	29307947	148374934	Mouse
4141236	Hbnr5_m	Heligmosomoides bakeri nematode resistance 5 (mouse)			Not determined			31214567	105143570	Mouse
4142447	Pbwg1.7_m	postnatal body weight growth 1.7 (mouse)			Not determined			35797324	69797406	Mouse
4141186	Pbwg1.8_m	postnatal body weight growth 1.8 (mouse)			Not determined			35797324	69797406	Mouse
4142133	Pbwg1.6_m	postnatal body weight growth 1.6 (mouse)			Not determined			35797324	69797406	Mouse
1559001	Eae33_m	experimental allergic encephalomyelitis susceptibility 33 (mouse)			Not determined		2	35991679	71609412	Mouse
10449151	Hdl8_m	high density lipoprotein (HDL) level 8 (mouse)					2	38129725	67072607	Mouse
10449150	Pvldlc1_m	plasma VLDL-cholesterol 1 (mouse)					2	38129725	67072607	Mouse
10449145	Lanq1_m	lanosterol level QTL 1 (mouse)					2	38129725	67072607	Mouse
11038703	Ltpr1_m	Leishmania tropica response 1 (mouse)					2	39971665	73971811	Mouse
1301109	Dntcs2_m	dental caries susceptibility 2 (mouse)			Not determined		2	40885493	114910165	Mouse
1301480	Pbwg1_m	postnatal body weight growth 1 (mouse)			Not determined		2	41820719	75820843	Mouse
4141069	Pbwg1.5_m	postnatal body weight growth 1.5 (mouse)			Not determined			43520612	77520756	Mouse
1300788	Cia2_m	collagen induced arthritis QTL 2 (mouse)			Not determined		2	43520612	77520756	Mouse
1300671	Cia4_m	collagen induced arthritis QTL 4 (mouse)			Not determined		2	43520612	77520756	Mouse
1301402	Ap2q_m	alcohol preference 2 QTL (mouse)			Not determined		2	43520612	77520756	Mouse
1301411	Pitm1_m	prion incubation time 1 (mouse)			Not determined		2	43520612	77520756	Mouse
10755532	Lymph5_m	lymphocyte differential 5 (mouse)					2	44199017	78199017	Mouse
1300645	Alcp1_m	alcohol preference locus 1 (mouse)			Not determined		2	45228128	67838868	Mouse
1301344	Lith1_m	lithogenic gene 1 (mouse)			Not determined		2	45347635	145312647	Mouse
11532740	Pbwg1.10_m	postnatal body weight growth 1.10 (mouse)					2	48132412	82132495	Mouse
1558820	Moo1_m	modifier of Odc1 (mouse)			Not determined		17	48269746	82269934	Mouse
1301747	Eae21_m	experimental allergic encephalomyelitis 21 (mouse)			Not determined		2	48269746	82269934	Mouse
1301235	Alcw4_m	alcohol withdrawal 4 (mouse)			Not determined		2	48269746	82269934	Mouse
1300568	Hdl1_m	high density lipoprotein (HDL) level 1 (mouse)			Not determined		2	48269746	82269934	Mouse
10755526	Lymph1_m	lymphocyte differential 1 (mouse)					2	50819314	84819314	Mouse
1300875	Taste1_m	taste-saccharin preference 1 (mouse)			Not determined		2	50923175	84923278	Mouse
1300761	Lgth1_m	body length 1 (mouse)			Not determined		2	51703276	85703425	Mouse
13464141	Hbbcq3_m	hemoglobin concentration QTL 3 (mouse)					2	52448019	86448136	Mouse
13463471	Hctq6_m	hematocrit QTL 6 (mouse)					2	52448019	86448136	Mouse
4142185	Pbwg1.3_m	postnatal body weight growth 1.3 (mouse)			Not determined			57187123	65132495	Mouse
4141406	Alpq2_m	alcohol preference QTL 2 (mouse)			Not determined		2	57524117	91524288	Mouse
12738429	Lfibq18_m	liver fibrosis QTL 18 (mouse)					2	57919991	91919991	Mouse
13432185	Acdes1_m	activity chamber difference ethanol/saline 1 (mouse)					2	59392287	62892287	Mouse
13432184	Actdes1_m	activity chamber total difference ethanol/saline 1 (mouse)					2	59392287	69292287	Mouse
13432174	Actres5_m	activity response to ethanol/saline 5 (mouse)					2	59892287	69792287	Mouse
1357577	Trmq3_m	T cell ratio modifier QTL 3 (mouse)			Not determined		2	60520612	119355518	Mouse
13432178	Actres2_m	activity response to ethanol/saline 2 (mouse)					2	60692287	74092287	Mouse
13432175	Actres4_m	activity response to ethanol/saline 4 (mouse)					2	60792287	62892287	Mouse
13432177	Actres3_m	activity response to ethanol/saline 3 (mouse)					2	60792287	63092287	Mouse
13432180	Acq2_m	activity chamber QTL 2 (mouse)					2	60792287	64592287	Mouse
13824983	Vclq1_m	curvilinear velocity QTL 1 (mouse)					2	61830344	136841920	Mouse

Markers in Region

AI573844

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	62,693,533 - 62,693,640	UniSTS	GRCm38
MGSCv37	2	62,531,590 - 62,531,697	UniSTS	GRCm37
Celera	2	64,386,155 - 64,386,262	UniSTS
Cytogenetic Map	2	C1.3	UniSTS
Whitehead/MRC_RH	2	1005.39	UniSTS

BB403260

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	2	62,691,589 - 62,691,729	UniSTS	GRCm38
MGSCv37	2	62,529,646 - 62,529,786	UniSTS	GRCm37
Celera	2	64,384,223 - 64,384,363	UniSTS
Cytogenetic Map	2	C1.3	UniSTS
Whitehead/MRC_RH	2	993.08	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_145523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB088388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF518325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK033740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK033984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK040549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK046347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK049317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK084685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK160268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL929246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC021450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000028257 ⟹ ENSMUSP00000028257

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	62,494,629 - 62,524,453 (+)	Ensembl
GRCm38.p6 Ensembl	2	62,664,285 - 62,694,109 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000148083

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	2	62,516,542 - 62,520,775 (+)	Ensembl
GRCm38.p6 Ensembl	2	62,686,198 - 62,690,431 (+)	Ensembl

RefSeq Acc Id:

NM_145523 ⟹ NP_663498

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	2	62,494,671 - 62,524,453 (+)	NCBI
GRCm38	2	62,664,327 - 62,694,109 (+)	ENTREZGENE
MGSCv37	2	62,502,384 - 62,532,166 (+)	RGD
Celera	2	64,354,587 - 64,386,731 (+)	RGD
cM Map	2		ENTREZGENE

Sequence:

show sequence

ACTGCGCTCGGACCTTCCGCACCTGTCGCACGCACTTGCGCTTTCCCCGCTCTAAGCCGCGCTG
ACGCTGACTTACTGGTGACGCGTTACTTTCGATCGCCTGGTCATGGCCTACCCGGGATACGGAG
GGGCGTTTGGAAACTTCAGTGGTCAGATTCCAGGCATGCAAATGCAGATGGGCCAGCCAATGCC
AGGGGCAGGTCCCAATATGTTCTCTGGTGGCTACCCTGGATACCTGGGTTATTCTGACAGCTAC
TCCCCTGCCGACGACTCCATGTGGACTTATTTCACAGCTGTTGCTGGTCAGGATGGTGAGGTGG
ATGCTGAGGAACTGCAGAGATGCTTGACCCAGTCTGGAATTAGTGGAACTTACGCACCTTTCAG
TTTGGAAACCTGCAGAATTATGATTGCCATGTTGGATAGAGACTACACAGGAAAAATGGGGTTC
AACGAATTCAAGGAGCTTTGGGCCGCTCTTAATGCCTGGAAGCAGAACTTCATGACCATTGACC
AAGATCAAAGTGGCACGGTAGAACATCATGAGCTGAGTCAAGCCATCGCTCTTATGGGCTACAG
GTTGAGTCCACAGACATTAGCTGCAATTGTCAGACGCTACAGCAAGAATGGCCGGATTTTCTTT
GATGACTATGTTGCCTGCTGTGTGAAGCTGCGCGCCCTGACAGATTTCTTTAGGCGAAGAGACC
ACTTGCAACAAGGGATTGTGAATTTCATGTATGAAGATTTTTTGCAGGGCACTATGACAATTTG
AAAGCCTAGCATTCCAAAGGCGGAGACAGACTGCGAATCCTTCTGCTTCATTGAAACAGACTGG
ACTACCTAAAATTGAAAGCTCGCGGAACTGTTTTGTATACCTTCCTGTGAAAGCTCCCCGCCCT
TTCTGTTATTTAACCTTAAAGCACAGTTCAATGCAATAACTTTTTTATTTGGAATATATTATTT
TTGGAAAAGTTATGACATTGCAGATATATGCACGCTCTCTTGAAATGTTGCTAATGGTATGTAG
CTAACTGATCCCAGCATACCTGAGCCTTAGTTCTTAACAATAAAGCATAGCAGAATGTAGTCAC
ATGACAGATTGTCTACTAAGCCAAATAACGAAAGTCTAGATAAAACTTTTATATTATCTAAAGG
CTACAAGTTATACTTGTGATGTTGTTTGTGTCTGTGGGTGTTTCTAGGAGTGAGTCAGAGGGGA
CAGCTGCACTTTGTGCTGTCTTTTGGGTTTTGATTAAACCATCAGAGGACATAGCACATGTTCG
TGGCCAGTGAACTGTAGTTCCTAAGACTTTATCGTTCTTTGGGTCTGTCAGCCTAGAGTAGTAG
TAGGTATTGTTTCACCTATTTTTTATTGCATTATTTTTGTACAATATGTTTTATTGTCTTCCCA
CAATTGTTTTTGTTTTCAACTTCTCTGTTTTCATTTAGCTGTGTTTTGTGAGACAGGGTCTTTC
TACATAGCCCAGTGTGACACAAATTCATGGTCTTCCTTTCTTGTCCCTCATTGTTTGTAGAAAT
TCAAGACTTGCACACCCTTGCCCATACTAAAAATTCCAATGAAGATGCTTTTCTCTTTCATTAG
TGAAGGCCCAGGTAACCTAAAATGTCAACCGTCCCTGAATCCCGCAGCTCAGAGGAGCAGCACA
CATTAGTGCTGGGTCAGCATTCATTCACGTTTGTTCAGTTAAAGCCAGGTTCTGCTCCTAGTTA
ATGGCAACAGTTTATAAAGCAAACCAAGTGATCTGCCTCTGTTAACTGTTCAGAAATTCTGTGT
TGGATTGGTAGTATGGACTAATTTATGTGTGCCTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGCCAAGTAGTGTTTTGACTTTTTTCTTTTTTTTTTTATAAAATTATAAAA
TTATCCTCCTCCTCCCATTCGTCCACTTCCCTTTCCTCCTCTTCTTCCTTTTCCCCCTCTTTTT
CCTCCTCTTCTTCCTCTTCCTCCTCCTCCTCCTTCTTGTTCCATAGGCAGTGTTTTTGGTGAAA
TTTTCTATAGAGATTTCAGTGGTTACCGGGTTCTTTGCATTAAGTTGTCTGATCTAAGATGTCA
GAGTTAATTTGGTTTCTGAATTTTCGTATATTTTAACTGAATATATTCTAGCTGAATTCTGATG
CAAATAGATATAATTTTAGTGTAGCTGGTGACCAAATTAAATATTTAAGAAAGAACTCCATGAT
TTTTAAAAATATTTTTAAAAGAAAACTCCACAAAAGTGCAAGCTCTTTTTATAAATACAGAAAA
CTTAAAATCAGCTTTTACTTCAAAAGATCCTGAAAAGGAAATGATGTCTAATCATTTTGATATT
GATTACTATGTAACTTGCCATCAATCTGGATACTTGGTTATTGTGTAAGAATAGATCAATGAAT
AATGCATACACATTGTCCTCTGACAATTTGTTCATGACCACATAGTCAGTAGCCTGAAGGAATA
TTAAGGGAACCATTGAAGGTACAGAATCTGAAGCTGTCATAGAAAACAGAAGCCACACCATGAT
GTTGTAAGTCATTGAGCAGTGTACACTCTTAATGTATAAGTGCTTTTATTTATACAGTAAACAT
GTTTCCATGTCATTTTGAGAATTTTTTAATAAACATTCAAATAGCTTGCTGTAAAGTTTTGTAT
CATACAAAATTTGTTACATATATACTGCAATGAGATGCCTCAGTTCAAACAACGGTGCATTAAT
TCAGCTATTATCTAAAAGATTGCCAAATGGTTAAATGCCAGGTATTGCACTTCTAGTGTGAGTG
GCAGTTTACACACTTTAAATTACATCAAGGGAAAATCAATACTATGAGAATCTTGATTTGGTCC
ACTTTAAATGTATTTTTAAGGACTGTGCTCATTAACCTATTTTAGGCATGCATTCAGAAAAAAG
AAAGTTAACAAATATATATTCAAGTTATATATTTATTTCCAGAAAAAGCATTTAGCCTGGAAGA
AAGTAGAATTTATCAAGGTAGTTTAAACTCTGTGCAATTAAAAAAATAAGAAAATCAATTTGTG
ATAGTTCTTTAATTAAAATATACAAATCAAGTCCACTTGTAATCTTATGATAGTACTGATTGAA
CAAACAAAATAAATACTATTCGTGAGAAATGTGCTTTTTTAAATGTTCTTTTCTGTTTGACAAA
CTAAAGTGGATATGTTTTGTCTTGTTTCATTAACAACTTCCTGTAAATTTGATAGGAATATGTT
TTTTAAAGTTTGTAAATTGAACCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_663498	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH21450	(Get FASTA)	NCBI Sequence Viewer
	AAM66720	(Get FASTA)	NCBI Sequence Viewer
	BAC07231	(Get FASTA)	NCBI Sequence Viewer
	BAC28458	(Get FASTA)	NCBI Sequence Viewer
	BAC32686	(Get FASTA)	NCBI Sequence Viewer
	BAC33679	(Get FASTA)	NCBI Sequence Viewer
	BAC34315	(Get FASTA)	NCBI Sequence Viewer
	BAC37457	(Get FASTA)	NCBI Sequence Viewer
	EDL26992	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000028257
	ENSMUSP00000028257.3
GenBank Protein	Q8VC88	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_663498 ⟸ NM_145523

- UniProtKB:

Q8BL53 (UniProtKB/Swiss-Prot), Q8K3Z6 (UniProtKB/Swiss-Prot), Q8VC88 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAYPGYGGAFGNFSGQIPGMQMQMGQPMPGAGPNMFSGGYPGYLGYSDSYSPADDSMWTYFTAV
AGQDGEVDAEELQRCLTQSGISGTYAPFSLETCRIMIAMLDRDYTGKMGFNEFKELWAALNAWK
QNFMTIDQDQSGTVEHHELSQAIALMGYRLSPQTLAAIVRRYSKNGRIFFDDYVACCVKLRALT
DFFRRRDHLQQGIVNFMYEDFLQGTMTI

hide sequence

RefSeq Acc Id:

ENSMUSP00000028257 ⟸ ENSMUST00000028257

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8VC88-F1-model_v2	AlphaFold	Q8VC88	1-220	view protein structure

Promoters

RGD ID:

6831431

Promoter ID:

MM_KWN:29419

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Kidney, Liver, Lung, Spleen

Transcripts:

OTTMUST00000030860

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	2	62,502,221 - 62,502,721 (+)	MPROMDB

RGD ID:

6877462

Promoter ID:

EPDNEW_M2166

Type:

initiation region

Name:

Gca_1

Description:

Mus musculus grancalcin , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	2	62,664,327 - 62,664,387	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1918521	AgrOrtholog
Ensembl Genes	ENSMUSG00000026893	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000028257	ENTREZGENE
	ENSMUST00000028257.3	UniProtKB/Swiss-Prot
Gene3D-CATH	6.10.140.900	UniProtKB/Swiss-Prot
	EF-hand	UniProtKB/Swiss-Prot
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
KEGG Report	mmu:227960	UniProtKB/Swiss-Prot
MGD	MGI:1918521	ENTREZGENE
NCBI Gene	227960	ENTREZGENE
PANTHER	CALPAIN, SMALL SUBUNIT 1 A-RELATED	UniProtKB/Swiss-Prot
	GRANCALCIN	UniProtKB/Swiss-Prot
Pfam	EF-hand_8	UniProtKB/Swiss-Prot
PhenoGen	Gca	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot
UniProt	GRAN_MOUSE	UniProtKB/Swiss-Prot
	Q8BL53	ENTREZGENE
	Q8K3Z6	ENTREZGENE
	Q8VC88	ENTREZGENE
UniProt Secondary	Q8BL53	UniProtKB/Swiss-Prot
	Q8K3Z6	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar

Mammalian Phenotype