GCA (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 10 | 47,732,741 - 47,777,928 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 10 | 47,757,459 - 47,775,055 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666040 | 151,755,186 - 151,800,283 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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GCA (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 2 | 162,318,763 - 162,375,396 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 2 | 162,318,840 - 162,371,595 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 2 | 163,175,273 - 163,219,633 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 2 | 162,908,896 - 162,925,875 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 2 | 163,026,156 - 163,043,136 | NCBI | | | | | Celera | 2 | 156,810,897 - 156,829,481 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q24.2 | NCBI | | | | | HuRef | 2 | 155,082,887 - 155,101,451 (+) | NCBI | | HuRef | | | CHM1_1 | 2 | 163,206,468 - 163,225,034 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 2 | 162,775,430 - 162,833,885 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Gca (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 2 | 62,494,671 - 62,524,453 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 2 | 62,494,629 - 62,524,453 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 2 | 62,664,327 - 62,694,109 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 2 | 62,664,285 - 62,694,109 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 2 | 62,502,384 - 62,532,166 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 2 | 62,465,166 - 62,494,948 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 2 | 64,354,587 - 64,386,731 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | C1.3 | NCBI | | | | | cM Map | 2 | 36.47 | NCBI | | | | |
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Gca (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 3 | 67,705,874 - 67,738,475 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 3 | 47,297,320 - 47,329,913 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 3 | 47,297,383 - 47,328,581 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 3 | 50,652,068 - 50,684,657 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 3 | 59,235,600 - 59,268,188 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 3 | 57,008,777 - 57,041,316 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 3 | 48,625,965 - 48,661,317 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 3 | 48,626,038 - 48,661,317 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 3 | 55,291,465 - 55,326,008 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 3 | 44,616,037 - 44,648,897 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 3 | 44,512,448 - 44,541,386 (+) | NCBI | | | | | Celera | 3 | 46,938,285 - 46,969,570 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | q21 | NCBI | | | | |
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Gca (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955449 | 11,504,058 - 11,522,661 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955449 | 11,503,201 - 11,538,809 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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GCA (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 13 | 65,010,804 - 65,054,157 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 2B | 65,025,747 - 65,069,132 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 2B | 49,612,156 - 49,657,114 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 2B | 166,980,348 - 167,023,578 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 2B | 167,005,108 - 167,023,581 (+) | Ensembl | panpan1.1 | | panPan2 | |
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GCA (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 36 | 7,727,578 - 7,780,439 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 36 | 7,749,191 - 7,778,968 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 36 | 7,871,005 - 7,924,587 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 36 | 7,859,231 - 7,913,061 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 36 | 7,880,907 - 7,913,800 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 36 | 7,877,439 - 7,931,219 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 36 | 7,918,593 - 7,972,227 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 36 | 8,026,108 - 8,079,928 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Gca (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
HiC_Itri_2 | NW_024405303 | 124,914,685 - 124,942,542 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936469 | 16,686,192 - 16,703,109 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936469 | 16,675,897 - 16,703,024 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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GCA (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 15 | 68,985,328 - 69,054,052 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 15 | 69,015,230 - 69,054,057 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 15 | 76,511,222 - 76,544,884 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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Gca (Heterocephalus glaber - naked mole-rat) |
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