Csrnp3 (cysteine-serine-rich nuclear protein 3) - Rat Genome Database

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Gene: Csrnp3 (cysteine-serine-rich nuclear protein 3) Mus musculus
Analyze
Symbol: Csrnp3
Name: cysteine-serine-rich nuclear protein 3
RGD ID: 1314705
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in positive regulation of apoptotic process and positive regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including central nervous system; gonad; gut; liver; and spleen. Orthologous to human CSRNP3 (cysteine and serine rich nuclear protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A330102K23Rik; Csnrp3; CSR; CSRNP-3; cysteine/serine-rich nuclear protein 3; Mbu1; RP23-306G16.1; taip-2; TGF-beta induced apoptosis protein 2; TGF-beta-induced apoptosis protein 2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,675,628 - 65,866,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,676,111 - 65,861,890 (+)EnsemblGRCm39 Ensembl
GRCm38265,845,284 - 66,036,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37265,683,824 - 65,869,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,646,681 - 65,824,298 (+)NCBIMGSCv36mm8
Celera267,525,836 - 67,711,310 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.79NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15840001   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17433858   PMID:17726538   PMID:18291095   PMID:18799693   PMID:21267068   PMID:21873635   PMID:23076708   PMID:23604909   PMID:31146259  


Genomics

Comparative Map Data
Csrnp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,675,628 - 65,866,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,676,111 - 65,861,890 (+)EnsemblGRCm39 Ensembl
GRCm38265,845,284 - 66,036,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37265,683,824 - 65,869,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,646,681 - 65,824,298 (+)NCBIMGSCv36mm8
Celera267,525,836 - 67,711,310 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.79NCBI
CSRNP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,469,698 - 165,689,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,469,647 - 165,689,407 (+)EnsemblGRCh38hg38GRCh38
GRCh372166,326,208 - 166,545,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,137,136 - 166,245,458 (+)NCBINCBI36Build 36hg18NCBI36
Celera2159,936,725 - 160,155,865 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,208,131 - 158,427,753 (+)NCBIHuRef
CHM1_12166,331,798 - 166,552,214 (+)NCBICHM1_1
T2T-CHM13v2.02165,926,990 - 166,146,740 (+)NCBIT2T-CHM13v2.0
Csrnp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,906,587 - 71,102,596 (+)NCBIGRCr8
mRatBN7.2350,498,379 - 50,695,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,849,858 - 54,029,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,433,474 - 62,612,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,209,518 - 60,388,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,883,559 - 52,120,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,517,979 - 58,753,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,877,014 - 47,972,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,773,070 - 47,870,041 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBICelera
Cytogenetic Map3q21NCBI
Csrnp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,460,577 - 8,635,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,450,292 - 8,635,393 (-)NCBIChiLan1.0ChiLan1.0
CSRNP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,130,375 - 68,348,373 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,145,368 - 68,363,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B52,744,717 - 52,962,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,103,604 - 170,311,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,122,687 - 170,311,348 (+)Ensemblpanpan1.1panPan2
CSRNP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,664,555 - 10,863,366 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,664,365 - 10,850,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3610,809,377 - 10,998,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03610,798,782 - 10,988,138 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3610,815,759 - 10,988,367 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13610,880,583 - 11,069,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03610,852,565 - 11,042,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03610,965,349 - 11,154,675 (+)NCBIUU_Cfam_GSD_1.0
Csrnp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303127,844,785 - 127,988,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,631,182 - 13,770,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,628,830 - 13,808,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,141,621 - 72,233,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,040,854 - 72,242,269 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,471,002 - 80,672,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSRNP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11050,967,138 - 51,184,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,073,480 - 51,182,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,332,089 - 148,543,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csrnp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Csrnp3
10599 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4930
Count of miRNA genes:958
Interacting mature miRNAs:1415
Transcripts:ENSMUST00000053910, ENSMUST00000112394, ENSMUST00000112397, ENSMUST00000122912, ENSMUST00000129133, ENSMUST00000139896, ENSMUST00000145598, ENSMUST00000176109
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
4142133Pbwg1.6_mpostnatal body weight growth 1.6 (mouse)Not determined3579732469797406Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13432174Actres5_mactivity response to ethanol/saline 5 (mouse)25989228769792287Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
13432184Actdes1_mactivity chamber total difference ethanol/saline 1 (mouse)25939228769292287Mouse
13506939Pbwg1.12_mpostnatal body weight growth 1.12 (mouse)26513241268703425Mouse
1300645Alcp1_malcohol preference locus 1 (mouse)Not determined24522812867838868Mouse
4141186Pbwg1.8_mpostnatal body weight growth 1.8 (mouse)Not determined3579732469797406Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
4142447Pbwg1.7_mpostnatal body weight growth 1.7 (mouse)Not determined3579732469797406Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
10449151Hdl8_mhigh density lipoprotein (HDL) level 8 (mouse)23812972567072607Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
10449150Pvldlc1_mplasma VLDL-cholesterol 1 (mouse)23812972567072607Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
10449145Lanq1_mlanosterol level QTL 1 (mouse)23812972567072607Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
A330102K23Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
cM Map2 UniSTS
cM Map2 UniSTS
cM Map2 UniSTS
Csrnp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
A330102K23Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
A330102K23Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2C1.3UniSTS
cM Map2 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_178634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB091688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW492062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX284648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY297754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF210820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000053910   ⟹   ENSMUSP00000055719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,676,186 - 65,855,950 (+)Ensembl
GRCm38.p6 Ensembl265,845,842 - 66,025,606 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112394   ⟹   ENSMUSP00000108013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,779,293 - 65,853,397 (+)Ensembl
GRCm38.p6 Ensembl265,948,949 - 66,023,053 (+)Ensembl
Ensembl Acc Id: ENSMUST00000112397   ⟹   ENSMUSP00000135151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,676,199 - 65,853,623 (+)Ensembl
GRCm38.p6 Ensembl265,845,855 - 66,023,279 (+)Ensembl
Ensembl Acc Id: ENSMUST00000122912   ⟹   ENSMUSP00000117533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,676,111 - 65,861,890 (+)Ensembl
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,690,941 - 65,779,783 (+)Ensembl
GRCm38.p6 Ensembl265,860,597 - 65,949,439 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,676,189 - 65,709,162 (+)Ensembl
GRCm38.p6 Ensembl265,845,845 - 65,878,818 (+)Ensembl
Ensembl Acc Id: ENSMUST00000145598   ⟹   ENSMUSP00000135605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,762,209 - 65,853,828 (+)Ensembl
GRCm38.p6 Ensembl265,931,865 - 66,023,484 (+)Ensembl
Ensembl Acc Id: ENSMUST00000176109   ⟹   ENSMUSP00000135019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl265,760,481 - 65,854,290 (+)Ensembl
GRCm38.p6 Ensembl265,930,137 - 66,023,946 (+)Ensembl
RefSeq Acc Id: NM_001290665   ⟹   NP_001277594
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,762,209 - 65,861,890 (+)NCBI
GRCm38265,931,865 - 66,031,546 (+)NCBI
Celera267,525,836 - 67,711,310 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001290666   ⟹   NP_001277595
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,111 - 65,861,890 (+)NCBI
GRCm38265,845,767 - 66,031,546 (+)NCBI
Celera267,525,836 - 67,711,310 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153409   ⟹   NP_700458
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,111 - 65,861,890 (+)NCBI
GRCm38265,845,767 - 66,031,546 (+)ENTREZGENE
MGSCv37265,683,824 - 65,869,603 (+)RGD
Celera267,525,836 - 67,711,310 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_178634   ⟹   NP_848749
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,111 - 65,861,890 (+)NCBI
GRCm38265,845,767 - 66,031,546 (+)ENTREZGENE
MGSCv37265,683,824 - 65,869,603 (+)RGD
Celera267,525,836 - 67,711,310 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252233   ⟹   XP_030108093
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,675,628 - 65,866,958 (+)NCBI
GRCm38265,845,284 - 66,036,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252234   ⟹   XP_030108094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,675,682 - 65,866,958 (+)NCBI
GRCm38265,845,338 - 66,036,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252235   ⟹   XP_030108095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,048 - 65,866,958 (+)NCBI
GRCm38265,845,704 - 66,036,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252236   ⟹   XP_030108096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,048 - 65,866,958 (+)NCBI
GRCm38265,845,704 - 66,036,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252237   ⟹   XP_030108097
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,048 - 65,866,958 (+)NCBI
GRCm38265,845,704 - 66,036,614 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162720   ⟹   XP_036018613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39265,676,048 - 65,866,958 (+)NCBI
Sequence:
RefSeq Acc Id: NP_700458   ⟸   NM_153409
- Peptide Label: isoform a
- UniProtKB: Q8BUT9 (UniProtKB/Swiss-Prot),   A3F6Q4 (UniProtKB/Swiss-Prot),   Q8BYL1 (UniProtKB/Swiss-Prot),   P59055 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_848749   ⟸   NM_178634
- Peptide Label: isoform a
- UniProtKB: Q8BUT9 (UniProtKB/Swiss-Prot),   A3F6Q4 (UniProtKB/Swiss-Prot),   Q8BYL1 (UniProtKB/Swiss-Prot),   P59055 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277595   ⟸   NM_001290666
- Peptide Label: isoform c
- UniProtKB: Q7TNU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277594   ⟸   NM_001290665
- Peptide Label: isoform b
- UniProtKB: P59055 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030108093   ⟸   XM_030252233
- Peptide Label: isoform X1
- UniProtKB: Q8BUT9 (UniProtKB/Swiss-Prot),   P59055 (UniProtKB/Swiss-Prot),   A3F6Q4 (UniProtKB/Swiss-Prot),   Q8BYL1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108094   ⟸   XM_030252234
- Peptide Label: isoform X1
- UniProtKB: Q8BUT9 (UniProtKB/Swiss-Prot),   P59055 (UniProtKB/Swiss-Prot),   A3F6Q4 (UniProtKB/Swiss-Prot),   Q8BYL1 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108095   ⟸   XM_030252235
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108097   ⟸   XM_030252237
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030108096   ⟸   XM_030252236
- Peptide Label: isoform X2
Ensembl Acc Id: ENSMUSP00000135605   ⟸   ENSMUST00000145598
Ensembl Acc Id: ENSMUSP00000135151   ⟸   ENSMUST00000112397
Ensembl Acc Id: ENSMUSP00000108013   ⟸   ENSMUST00000112394
Ensembl Acc Id: ENSMUSP00000055719   ⟸   ENSMUST00000053910
Ensembl Acc Id: ENSMUSP00000117533   ⟸   ENSMUST00000122912
Ensembl Acc Id: ENSMUSP00000135019   ⟸   ENSMUST00000176109
RefSeq Acc Id: XP_036018613   ⟸   XM_036162720
- Peptide Label: isoform X2
Protein Domains
Cysteine/serine-rich nuclear protein N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P59055-F1-model_v2 AlphaFold P59055 1-597 view protein structure

Promoters
RGD ID:6831083
Promoter ID:MM_KWN:29461
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_178634,   OTTMUST00000031210,   OTTMUST00000031311,   OTTMUST00000031313
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36265,683,516 - 65,684,016 (+)MPROMDB
RGD ID:6830658
Promoter ID:MM_KWN:29465
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000031316,   UC008JWS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36265,769,711 - 65,770,211 (+)MPROMDB
RGD ID:6877454
Promoter ID:EPDNEW_M2178
Type:multiple initiation site
Name:Csrnp3_1
Description:Mus musculus cysteine-serine-rich nuclear protein 3 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38265,845,842 - 65,845,902EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925021 AgrOrtholog
Ensembl Genes ENSMUSG00000044647 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000053910 ENTREZGENE
  ENSMUST00000053910.10 UniProtKB/Swiss-Prot
  ENSMUST00000112394.2 UniProtKB/Swiss-Prot
  ENSMUST00000112397.3 UniProtKB/TrEMBL
  ENSMUST00000122912 ENTREZGENE
  ENSMUST00000122912.8 UniProtKB/Swiss-Prot
  ENSMUST00000145598 ENTREZGENE
  ENSMUST00000145598.9 UniProtKB/Swiss-Prot
  ENSMUST00000176109.8 UniProtKB/Swiss-Prot
InterPro CSRNP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:77771 UniProtKB/Swiss-Prot
MGD MGI:1925021 ENTREZGENE
NCBI Gene 77771 ENTREZGENE
PANTHER CYSTEINE/SERINE-RICH NUCLEAR PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13580 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Csrnp3 PhenoGen
PRINTS CYSSERRICHNP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A3F6Q4 ENTREZGENE
  CSRN3_MOUSE UniProtKB/Swiss-Prot
  H3BJW4_MOUSE UniProtKB/TrEMBL
  P59055 ENTREZGENE
  Q7TNU4 ENTREZGENE, UniProtKB/TrEMBL
  Q8BUT9 ENTREZGENE
  Q8BYL1 ENTREZGENE
UniProt Secondary A3F6Q4 UniProtKB/Swiss-Prot
  Q8BUT9 UniProtKB/Swiss-Prot
  Q8BYL1 UniProtKB/Swiss-Prot