Csrnp3 (cysteine and serine rich nuclear protein 3) - Rat Genome Database

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Gene: Csrnp3 (cysteine and serine rich nuclear protein 3) Heterocephalus glaber
Analyze
Symbol: Csrnp3
Name: cysteine and serine rich nuclear protein 3
RGD ID: 18902216
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); benign familial infantile seizures 3 (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine/serine-rich nuclear protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Csrnp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSRNP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,469,698 - 165,689,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,469,647 - 165,689,407 (+)EnsemblGRCh38hg38GRCh38
GRCh372166,326,208 - 166,545,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,137,136 - 166,245,458 (+)NCBINCBI36Build 36hg18NCBI36
Celera2159,936,725 - 160,155,865 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,208,131 - 158,427,753 (+)NCBIHuRef
CHM1_12166,331,798 - 166,552,214 (+)NCBICHM1_1
T2T-CHM13v2.02165,926,990 - 166,146,740 (+)NCBIT2T-CHM13v2.0
Csrnp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,675,628 - 65,866,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,676,111 - 65,861,890 (+)EnsemblGRCm39 Ensembl
GRCm38265,845,284 - 66,036,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37265,683,824 - 65,869,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,646,681 - 65,824,298 (+)NCBIMGSCv36mm8
Celera267,525,836 - 67,711,310 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.79NCBI
Csrnp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,906,587 - 71,102,596 (+)NCBIGRCr8
mRatBN7.2350,498,379 - 50,695,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,849,858 - 54,029,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,433,474 - 62,612,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,209,518 - 60,388,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,883,559 - 52,120,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,517,979 - 58,753,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,877,014 - 47,972,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,773,070 - 47,870,041 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBICelera
Cytogenetic Map3q21NCBI
Csrnp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,460,577 - 8,635,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,450,292 - 8,635,393 (-)NCBIChiLan1.0ChiLan1.0
CSRNP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,130,375 - 68,348,373 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,145,368 - 68,363,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B52,744,717 - 52,962,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,103,604 - 170,311,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,122,687 - 170,311,348 (+)Ensemblpanpan1.1panPan2
CSRNP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,664,555 - 10,863,366 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,664,365 - 10,850,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3610,809,377 - 10,998,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03610,798,782 - 10,988,138 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3610,815,759 - 10,988,367 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13610,880,583 - 11,069,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03610,852,565 - 11,042,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03610,965,349 - 11,154,675 (+)NCBIUU_Cfam_GSD_1.0
Csrnp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303127,844,785 - 127,988,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,631,182 - 13,770,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,628,830 - 13,808,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,141,621 - 72,233,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,040,854 - 72,242,269 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,471,002 - 80,672,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSRNP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11050,967,138 - 51,184,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,073,480 - 51,182,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,332,089 - 148,543,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004857599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002387029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01062529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000026080   ⟹   ENSHGLP00000025851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026081   ⟹   ENSHGLP00000025852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247873,411,754 - 3,500,852 (+)Ensembl
RefSeq Acc Id: XM_004857599   ⟹   XP_004857656
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,637 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_004857600   ⟹   XP_004857657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,410,419 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_004857601   ⟹   XP_004857658
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,412,330 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238560   ⟹   XP_021094219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238561   ⟹   XP_021094220
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,321,624 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238562   ⟹   XP_021094221
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,638 - 3,506,450 (+)NCBI
RefSeq Acc Id: XR_002387029
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBI
RefSeq Acc Id: XP_021094219   ⟸   XM_021238560
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004857656   ⟸   XM_004857599
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021094221   ⟸   XM_021238562
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021094220   ⟸   XM_021238561
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004857657   ⟸   XM_004857600
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004857658   ⟸   XM_004857601
- Peptide Label: isoform X3
Ensembl Acc Id: ENSHGLP00000025852   ⟸   ENSHGLT00000026081
Ensembl Acc Id: ENSHGLP00000025851   ⟸   ENSHGLT00000026080


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018400 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026080 ENTREZGENE
  ENSHGLT00000026081 ENTREZGENE
NCBI Gene Csrnp3 ENTREZGENE