Csrnp3 (cysteine and serine rich nuclear protein 3) - Rat Genome Database

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Gene: Csrnp3 (cysteine and serine rich nuclear protein 3) Heterocephalus glaber
Analyze
Symbol: Csrnp3
Name: cysteine and serine rich nuclear protein 3
RGD ID: 18902216
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); benign familial infantile seizures 3 (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cysteine/serine-rich nuclear protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Csrnp3Naked Mole-Ratasphyxiating thoracic dystrophy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Jeune thoracic dystrophyClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratasphyxiating thoracic dystrophy 1  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Chondroectodermal dysplasia-like syndromeClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratbenign familial infantile seizures 3  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Seizures more ...ClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratbenign familial neonatal epilepsy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial neonatal seizuresClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratdevelopmental and epileptic encephalopathy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratdevelopmental and epileptic encephalopathy 11  ISOCSRNP3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratearly infantile epileptic encephalopathy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratepilepsy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: EpilepsyClinVarPMID:25741868
Csrnp3Naked Mole-Ratgeneralized epilepsy with febrile seizures plus 7  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: GEFS+, TYPE 7ClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Rathereditary sensory and autonomic neuropathy type 2A  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Neuropathy more ...ClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Rathereditary sensory neuropathy  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: NEUROPATHY more ...ClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratnephronophthisis  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: NephronophthisisClinVarPMID:15133511 more ...
Csrnp3Naked Mole-Ratnephronophthisis 1  ISOCSRNP3 (Homo sapiens)8554872ClinVar Annotator: match by term: juvenile nephronophthisisClinVarPMID:15133511 more ...
1 to 13 of 13 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Csrnp3Naked Mole-RatSpontaneous Abortions  ISOCSRNP3 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:18539642
Csrnp3Naked Mole-Ratsubstance-related disorder  ISOCSRNP3 (Homo sapiens)9068941CTD Direct Evidence: marker/mechanismCTDPMID:20098672


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Csrnp3Naked Mole-Ratapoptotic process involved_inIEAUniProtKB-KW:KW-0053150520179 UniProtGO_REF:0000043
Csrnp3Naked Mole-Ratpositive regulation of apoptotic process involved_inISOCsrnp3 (Mus musculus)9068941 PMID:18291095UniProtPMID:18291095
Csrnp3Naked Mole-Ratpositive regulation of transcription by RNA polymerase II involved_inISOCsrnp3 (Mus musculus)9068941 PMID:17726538UniProtPMID:17726538
Csrnp3Naked Mole-Ratregulation of transcription by RNA polymerase II involved_inIEAPANTHER:PTN000339894150520179 TreeGrafterGO_REF:0000118

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Csrnp3Naked Mole-Ratnucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044
Csrnp3Naked Mole-Ratnucleus located_inIEAPANTHER:PTN000339894150520179 TreeGrafterGO_REF:0000118

Molecular Function

  

PMID:30032202  



Csrnp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CSRNP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,469,698 - 165,689,407 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,469,647 - 165,689,407 (+)EnsemblGRCh38hg38GRCh38
GRCh372166,326,208 - 166,545,917 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,137,136 - 166,245,458 (+)NCBINCBI36Build 36hg18NCBI36
Celera2159,936,725 - 160,155,865 (+)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,208,131 - 158,427,753 (+)NCBIHuRef
CHM1_12166,331,798 - 166,552,214 (+)NCBICHM1_1
T2T-CHM13v2.02165,926,990 - 166,146,740 (+)NCBIT2T-CHM13v2.0
Csrnp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,675,628 - 65,866,958 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,676,111 - 65,861,890 (+)EnsemblGRCm39 Ensembl
GRCm38265,845,284 - 66,036,614 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl265,845,767 - 66,031,546 (+)EnsemblGRCm38mm10GRCm38
MGSCv37265,683,824 - 65,869,603 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,646,681 - 65,824,298 (+)NCBIMGSCv36mm8
Celera267,525,836 - 67,711,310 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.79NCBI
Csrnp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8370,906,587 - 71,102,596 (+)NCBIGRCr8
mRatBN7.2350,498,379 - 50,695,598 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,498,633 - 50,685,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx353,849,858 - 54,029,207 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,433,474 - 62,612,826 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,209,518 - 60,388,863 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0351,883,559 - 52,120,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl351,883,559 - 52,120,290 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,517,979 - 58,753,059 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4347,877,014 - 47,972,981 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,773,070 - 47,870,041 (+)NCBI
Celera350,091,668 - 50,271,757 (+)NCBICelera
Cytogenetic Map3q21NCBI
Csrnp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,460,577 - 8,635,417 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,450,292 - 8,635,393 (-)NCBIChiLan1.0ChiLan1.0
CSRNP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,130,375 - 68,348,373 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,145,368 - 68,363,348 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B52,744,717 - 52,962,741 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,103,604 - 170,311,348 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,122,687 - 170,311,348 (+)Ensemblpanpan1.1panPan2
CSRNP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,664,555 - 10,863,366 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,664,365 - 10,850,520 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3610,809,377 - 10,998,552 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03610,798,782 - 10,988,138 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3610,815,759 - 10,988,367 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13610,880,583 - 11,069,834 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03610,852,565 - 11,042,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03610,965,349 - 11,154,675 (+)NCBIUU_Cfam_GSD_1.0
Csrnp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303127,844,785 - 127,988,598 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,631,182 - 13,770,257 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,628,830 - 13,808,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSRNP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,141,621 - 72,233,832 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,040,854 - 72,242,269 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,471,002 - 80,672,885 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CSRNP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11050,967,138 - 51,184,378 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,073,480 - 51,182,389 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,332,089 - 148,543,145 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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1 to 17 of 17 rows
RefSeq Transcripts XM_004857599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004857601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021238562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002387029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01062529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01062538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENSHGLT00000026080   ⟹   ENSHGLP00000025851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247873,308,484 - 3,500,852 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000026081   ⟹   ENSHGLP00000025852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247873,411,754 - 3,500,852 (+)Ensembl
RefSeq Acc Id: XM_004857599   ⟹   XP_004857656
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,637 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_004857600   ⟹   XP_004857657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,410,419 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_004857601   ⟹   XP_004857658
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,412,330 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238560   ⟹   XP_021094219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238561   ⟹   XP_021094220
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,321,624 - 3,506,450 (+)NCBI
RefSeq Acc Id: XM_021238562   ⟹   XP_021094221
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,638 - 3,506,450 (+)NCBI
RefSeq Acc Id: XR_002387029
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247873,308,502 - 3,506,450 (+)NCBI
Protein RefSeqs XP_004857656 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857657 (Get FASTA)   NCBI Sequence Viewer  
  XP_004857658 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094219 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094220 (Get FASTA)   NCBI Sequence Viewer  
  XP_021094221 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000025851
  ENSHGLP00000025852
RefSeq Acc Id: XP_021094219   ⟸   XM_021238560
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RCQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857656   ⟸   XM_004857599
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RE35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094221   ⟸   XM_021238562
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PSF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021094220   ⟸   XM_021238561
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RE35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004857657   ⟸   XM_004857600
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PSF9 (UniProtKB/TrEMBL)



1 to 13 of 13 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSHGLG00000018400 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026080 ENTREZGENE
  ENSHGLT00000026081 ENTREZGENE
InterPro CSRNP_N UniProtKB/TrEMBL
  Cys/Ser-rich_nuc_prot UniProtKB/TrEMBL
NCBI Gene Csrnp3 ENTREZGENE
PANTHER CYSTEINE_SERINE-RICH NUCLEAR PROTEIN 3 UniProtKB/TrEMBL
  TGF-BETA INDUCED APOPTOSIS PROTEIN UniProtKB/TrEMBL
Pfam CSRNP_N UniProtKB/TrEMBL
PRINTS CYSSERRICHNP UniProtKB/TrEMBL
UniProt A0AAX6PSF9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RCQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RE35 ENTREZGENE, UniProtKB/TrEMBL
1 to 13 of 13 rows