Ciao3 (cytosolic iron-sulfur assembly component 3) - Rat Genome Database

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Gene: Ciao3 (cytosolic iron-sulfur assembly component 3) Mus musculus
Analyze
Symbol: Ciao3
Name: cytosolic iron-sulfur assembly component 3
RGD ID: 1314336
MGI Page MGI
Description: Predicted to enable 4 iron, 4 sulfur cluster binding activity and metal ion binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation and iron-sulfur cluster assembly. Predicted to be part of cytosolic [4Fe-4S] assembly targeting complex. Orthologous to human CIAO3 (cytosolic iron-sulfur assembly component 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9030612I22Rik; AI504405; cytosolic Fe-S cluster assembly factor NARFL; IOP1; iron-only hydrogenase-like protein 1; N; Narfl; nuclear prelamin A recognition factor-like; nuclear prelamin A recognition factor-like protein; PRN
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,992,750 - 26,002,306 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,992,750 - 26,002,306 (+)EnsemblGRCm39 Ensembl
GRCm381725,773,776 - 25,783,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,773,776 - 25,783,332 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,910,721 - 25,920,277 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,501,400 - 25,510,932 (+)NCBIMGSCv36mm8
Celera1726,306,378 - 26,316,138 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.88NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. A collection of cDNAs enriched in upper cortical layers of the embryonic mouse brain. Garcia-Frigola C, etal., Brain Res Mol Brain Res 2004 Mar 30;122(2):133-50.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Iron-sulfur cluster biogenesis in mammalian cells: New insights into the molecular mechanisms of cluster delivery. Maio N and Rouault TA, Biochim Biophys Acta. 2015 Jun;1853(6):1493-512. doi: 10.1016/j.bbamcr.2014.09.009. Epub 2014 Sep 19.
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Biogenesis of cytosolic and nuclear iron-sulfur proteins and their role in genome stability. Paul VD and Lill R, Biochim Biophys Acta. 2015 Jun;1853(6):1528-39. doi: 10.1016/j.bbamcr.2014.12.018. Epub 2015 Jan 10.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21367862   PMID:21677750  
PMID:21873635   PMID:24029230   PMID:32325033  


Genomics

Comparative Map Data
Ciao3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,992,750 - 26,002,306 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,992,750 - 26,002,306 (+)EnsemblGRCm39 Ensembl
GRCm381725,773,776 - 25,783,332 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,773,776 - 25,783,332 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,910,721 - 25,920,277 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,501,400 - 25,510,932 (+)NCBIMGSCv36mm8
Celera1726,306,378 - 26,316,138 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.88NCBI
CIAO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816729,765 - 740,997 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16729,760 - 741,329 (-)EnsemblGRCh38hg38GRCh38
GRCh3716779,765 - 790,997 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616719,768 - 730,998 (-)NCBINCBI36Build 36hg18NCBI36
Celera16979,932 - 991,162 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16701,355 - 713,420 (-)NCBIHuRef
CHM1_116779,737 - 790,967 (-)NCBICHM1_1
T2T-CHM13v2.016733,939 - 745,171 (-)NCBIT2T-CHM13v2.0
Ciao3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,300,403 - 15,309,467 (+)NCBIGRCr8
mRatBN7.21014,795,888 - 14,804,953 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,795,961 - 14,804,950 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,535,018 - 19,543,954 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,023,897 - 19,032,831 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,524,003 - 14,532,951 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,143,732 - 15,152,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,143,713 - 15,153,396 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,956,675 - 14,965,649 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,041,376 - 15,050,350 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,041,375 - 15,050,349 (+)NCBI
Celera1014,464,975 - 14,473,945 (+)NCBICelera
Cytogenetic Map10q12NCBI
Ciao3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,465,178 - 16,475,110 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,465,759 - 16,475,110 (+)NCBIChiLan1.0ChiLan1.0
CIAO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218970,394 - 981,690 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,754,231 - 4,765,546 (-)NCBINHGRI_mPanPan1
PanPan1.116742,818 - 754,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16742,818 - 754,087 (-)Ensemblpanpan1.1panPan2
CIAO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,846,782 - 39,853,952 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,846,856 - 39,853,956 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,111,447 - 41,118,616 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,189,920 - 40,197,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,189,928 - 40,198,067 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,878,530 - 39,885,699 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,838,744 - 39,845,912 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,317,618 - 40,324,787 (+)NCBIUU_Cfam_GSD_1.0
Ciao3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,179,668 - 112,189,069 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501277,518 - 286,932 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501277,525 - 286,929 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIAO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,042,702 - 41,050,012 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,042,672 - 41,050,013 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,427,901 - 41,435,243 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIAO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15649,457 - 661,085 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5650,100 - 660,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,475,095 - 30,486,224 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ciao3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,538,546 - 1,553,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,538,561 - 1,553,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ciao3
364 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1314
Count of miRNA genes:561
Interacting mature miRNAs:692
Transcripts:ENSMUST00000002350, ENSMUST00000130861, ENSMUST00000131458, ENSMUST00000134108, ENSMUST00000149645, ENSMUST00000154711
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558807Ceat1_mchronic experimental autoimmune thyroiditis 1 (mouse)Not determined171263668226401133Mouse
12910528Nrq1_mnoise-induced hearing loss resistant QTL 1 (mouse)17129198453Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
1300613Pcyts4_mplasmacytoma susceptibility 4 (mouse)Not determined17127081639Mouse
4141608Phl1_mprogressive hearing loss 1 (mouse)Not determined17787584329487423Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1357743Lith3_mlithogenic gene 3 (mouse)Not determined17126194456Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
12910982Pifs2_mpeptide-induced fatal syndrome 2 (mouse)17126189355Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1302100Circp2_mcircadian photosensitivity 2 (mouse)Not determined17129198453Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301327Lmr7_mleishmaniasis resistance 7 (mouse)Not determined17485475227715939Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1357680Idd23_minsulin dependent diabetes susceptibility 23 (mouse)Not determined17397489026401133Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
12903990Opfaq5_mopen field activity QTL 5 (mouse)172595092528992098Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
12910527Nrq1a_mnoise-induced hearing loss resistant QTL 1a (mouse)17129198453Mouse
1301615Cfld3_mcystic fibrosis lung disease 3 (mouse)Not determined17127081639Mouse

Markers in Region
AI504405  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,782,482 - 25,782,702UniSTSGRCm38
MGSCv371725,919,427 - 25,919,647UniSTSGRCm37
Celera1726,315,288 - 26,315,508UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17321.45UniSTS
UniSTS:237595  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,778,107 - 25,778,306UniSTSGRCm38
MGSCv371725,915,052 - 25,915,251UniSTSGRCm37
Celera1726,310,913 - 26,311,112UniSTS
Cytogenetic Map17A3.3UniSTS
AI844861  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381725,782,838 - 25,782,953UniSTSGRCm38
MGSCv371725,919,783 - 25,919,898UniSTSGRCm37
Celera1726,315,644 - 26,315,759UniSTS
Cytogenetic Map17A3.3UniSTS
Whitehead/MRC_RH17315.79UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000002350   ⟹   ENSMUSP00000002350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,750 - 26,002,306 (+)Ensembl
GRCm38.p6 Ensembl1725,773,776 - 25,783,332 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130861
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,995,793 - 25,998,567 (+)Ensembl
GRCm38.p6 Ensembl1725,776,819 - 25,779,593 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131458   ⟹   ENSMUSP00000120281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,791 - 25,998,487 (+)Ensembl
GRCm38.p6 Ensembl1725,773,817 - 25,779,513 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134108   ⟹   ENSMUSP00000117136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,750 - 26,001,765 (+)Ensembl
GRCm38.p6 Ensembl1725,773,776 - 25,782,791 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,793 - 26,001,770 (+)Ensembl
GRCm38.p6 Ensembl1725,773,819 - 25,782,796 (+)Ensembl
Ensembl Acc Id: ENSMUST00000154711
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,781 - 25,994,199 (+)Ensembl
GRCm38.p6 Ensembl1725,773,807 - 25,775,225 (+)Ensembl
Ensembl Acc Id: ENSMUST00000236424
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,787 - 25,995,438 (+)Ensembl
GRCm38.p6 Ensembl1725,773,813 - 25,776,464 (+)Ensembl
Ensembl Acc Id: ENSMUST00000237541   ⟹   ENSMUSP00000157987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1725,992,778 - 26,001,767 (+)Ensembl
GRCm38.p6 Ensembl1725,773,804 - 25,782,793 (+)Ensembl
RefSeq Acc Id: NM_026238   ⟹   NP_080514
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,992,750 - 26,002,306 (+)NCBI
GRCm381725,773,776 - 25,783,332 (+)NCBI
MGSCv371725,910,721 - 25,920,277 (+)RGD
Celera1726,306,378 - 26,316,138 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524828   ⟹   XP_006524891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,992,752 - 26,001,770 (+)NCBI
GRCm381725,773,778 - 25,782,843 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006524829   ⟹   XP_006524892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391725,992,771 - 26,001,817 (+)NCBI
GRCm381725,773,793 - 25,782,843 (+)NCBI
Sequence:
RefSeq Acc Id: NP_080514   ⟸   NM_026238
- UniProtKB: Q9CXS6 (UniProtKB/Swiss-Prot),   Q8BRR3 (UniProtKB/Swiss-Prot),   Q3ULM7 (UniProtKB/Swiss-Prot),   Q9D320 (UniProtKB/Swiss-Prot),   Q7TMW6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006524891   ⟸   XM_006524828
- Peptide Label: isoform X1
- UniProtKB: A0A494BA87 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524892   ⟸   XM_006524829
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000157987   ⟸   ENSMUST00000237541
Ensembl Acc Id: ENSMUSP00000120281   ⟸   ENSMUST00000131458
Ensembl Acc Id: ENSMUSP00000117136   ⟸   ENSMUST00000134108
Ensembl Acc Id: ENSMUSP00000002350   ⟸   ENSMUST00000002350
Protein Domains
Iron hydrogenase large subunit C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TMW6-F1-model_v2 AlphaFold Q7TMW6 1-476 view protein structure

Promoters
RGD ID:13675172
Promoter ID:EPDNEW_M21735
Type:multiple initiation site
Name:Narfl_1
Description:Mus musculus nuclear prelamin A recognition factor-like , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381725,773,800 - 25,773,860EPDNEW
RGD ID:6828398
Promoter ID:MM_KWN:22626
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_026238,   OTTMUST00000085443,   OTTMUST00000085444,   OTTMUST00000085445,   OTTMUST00000085447
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361725,910,509 - 25,911,009 (+)MPROMDB
RGD ID:6828399
Promoter ID:MM_KWN:22627
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000085446
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361725,913,914 - 25,914,414 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914813 AgrOrtholog
Ensembl Genes ENSMUSG00000002280 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000002350 ENTREZGENE
  ENSMUST00000002350.11 UniProtKB/Swiss-Prot
  ENSMUST00000131458.8 UniProtKB/TrEMBL
  ENSMUST00000134108.8 UniProtKB/Swiss-Prot
  ENSMUST00000237541 ENTREZGENE
  ENSMUST00000237541.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cytosolic_Fe-S_CAF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fe_hydrogenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fe_hydrogenase_lsu_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fe_hydrogenase_ssu UniProtKB/Swiss-Prot
KEGG Report mmu:67563 UniProtKB/Swiss-Prot
MGD MGI:1914813 ENTREZGENE
NCBI Gene 67563 ENTREZGENE
PANTHER CYTOSOLIC IRON-SULFUR ASSEMBLY COMPONENT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NITRATE, FORMATE, IRON DEHYDROGENASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Fe_hyd_lg_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fe_hyd_SSU UniProtKB/Swiss-Prot
PhenoGen Ciao3 PhenoGen
SMART Fe_hyd_SSU UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BA87 ENTREZGENE, UniProtKB/TrEMBL
  CIAO3_MOUSE UniProtKB/Swiss-Prot
  D6RJ43_MOUSE UniProtKB/TrEMBL
  Q3ULM7 ENTREZGENE
  Q7TMW6 ENTREZGENE
  Q8BRR3 ENTREZGENE
  Q9CXS6 ENTREZGENE
  Q9D320 ENTREZGENE
UniProt Secondary Q3ULM7 UniProtKB/Swiss-Prot
  Q8BRR3 UniProtKB/Swiss-Prot
  Q9CXS6 UniProtKB/Swiss-Prot
  Q9D320 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-16 Ciao3  cytosolic iron-sulfur assembly component 3  Narfl  nuclear prelamin A recognition factor-like  Symbol and/or name change 5135510 APPROVED