Ncf4 (neutrophil cytosolic factor 4) - Rat Genome Database

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Gene: Ncf4 (neutrophil cytosolic factor 4) Mus musculus
Analyze
Symbol: Ncf4
Name: neutrophil cytosolic factor 4
RGD ID: 1314272
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-3-phosphate binding activity and superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Located in cytoplasm. Is expressed in liver; lower urinary tract; stomach; and testis. Human ortholog(s) of this gene implicated in autosomal recessive chronic granulomatous disease 3 and rheumatoid arthritis. Orthologous to human NCF4 (neutrophil cytosolic factor 4).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI451400; NCF-4; neutrophil cytosol factor 4; neutrophil NADPH oxidase factor 4; p40-phox; p40p; p40phox
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,128,324 - 78,146,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,129,001 - 78,146,780 (+)EnsemblGRCm39 Ensembl
GRCm381578,244,164 - 78,262,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,244,801 - 78,262,580 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,075,241 - 78,093,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,072,089 - 78,089,829 (+)NCBIMGSCv36mm8
Celera1579,705,722 - 79,723,507 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
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Evidence
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Reference
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Original Reference(s)
Ncf4Mouserheumatoid arthritis  ISONCF4 (Homo sapiens)41404710DNA:polymorphism and SNP:cds (rs729749) (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ncf4Mouseadenylosuccinase lyase deficiency  ISONCF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Adenylosuccinate lyase deficiencyClinVarPMID:28492532
Ncf4Mouseautosomal recessive chronic granulomatous disease 3  ISONCF4 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16199547 more ...
Ncf4Mousechronic granulomatous disease  ISONCF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Chronic granulomatous diseaseClinVarPMID:16880254 more ...
Ncf4MouseEmery-Dreifuss muscular dystrophy  ISONCF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Emery-Dreifuss muscular dystrophyClinVarPMID:16783378 more ...
Ncf4Mousemyoclonic dystonia 26  ISONCF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Myoclonic dystonia 26ClinVarPMID:16783378 more ...
Ncf4Mouseneurodegeneration with brain iron accumulation 2A  ISONCF4 (Homo sapiens)8554872ClinVar Annotator: match by term: Infantile neuroaxonal dystrophyClinVarPMID:16783378 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Ncf4MouseCrohn's disease  ISONCF4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:17435756
Ncf4Mouseheart disease  ISONCF4 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16330681
Object Symbol
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Reference
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Original Reference(s)
Ncf4Mouseautosomal recessive chronic granulomatous disease 3  ISONCF4 (Homo sapiens)7240710 OMIM 

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Object Symbol
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Term
Qualifier
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Reference
Notes
Source
Original Reference(s)
Ncf4Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISONCF4 (Homo sapiens)6480464o and p'-DDT results in increased expression of NCF4 mRNACTDPMID:35122929
Ncf4Mouse1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane multiple interactionsISONCF4 (Homo sapiens)6480464Quercetin inhibits the reaction [o and p'-DDT results in increased expression of NCF4 mRNA]CTDPMID:35122929
Ncf4Mouse1,1-dichloroethene increases expressionEXP 6480464vinylidene chloride results in increased expression of NCF4 mRNACTDPMID:26682919
Ncf4Mouse1,2-dimethylhydrazine increases expressionEXP 64804641 and 2-Dimethylhydrazine results in increased expression of NCF4 mRNACTDPMID:22206623
Ncf4Mouse17alpha-ethynylestradiol affects expressionEXP 6480464Ethinyl Estradiol affects the expression of NCF4 mRNACTDPMID:17555576
Ncf4Mouse17alpha-ethynylestradiol increases expressionISONcf4 (Rattus norvegicus)6480464Ethinyl Estradiol results in increased expression of NCF4 mRNACTDPMID:17557909
Ncf4Mouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of NCF4 mRNACTDPMID:17942748
Ncf4Mouse17alpha-ethynylestradiol multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NCF4 mRNACTDPMID:17942748
Ncf4Mouse17beta-estradiol multiple interactionsISONcf4 (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of NCF4 mRNACTDPMID:32741896
Ncf4Mouse17beta-estradiol 3-benzoate multiple interactionsISONcf4 (Rattus norvegicus)6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of NCF4 mRNACTDPMID:32741896
Ncf4Mouse2,2',4,4',5,5'-hexachlorobiphenyl increases expressionISONCF4 (Homo sapiens)64804642 more ...CTDPMID:30821169
Ncf4Mouse2,3',4,4',5-Pentachlorobiphenyl increases expressionISONCF4 (Homo sapiens)64804642 more ...CTDPMID:30821169 and PMID:31251971
Ncf4Mouse2,3',4,4',5-Pentachlorobiphenyl multiple interactionsISONCF4 (Homo sapiens)6480464AHR protein affects the reaction [2 more ...CTDPMID:31251971
Ncf4Mouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of NCF4 mRNACTDPMID:17942748
Ncf4Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISONcf4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of NCF4 mRNACTDPMID:34747641
Ncf4Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISONcf4 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of NCF4 mRNACTDPMID:32109520
Ncf4Mouse2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of NCF4 mRNACTDPMID:16120747 and PMID:26290441
Ncf4Mouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of NCF4 mRNACTDPMID:21570461 and PMID:26377647
Ncf4Mouse2,4-diaminotoluene increases expressionEXP 64804642 and 4-diaminotoluene results in increased expression of NCF4 mRNACTDPMID:20713471
Ncf4Mouse3,3',4,4',5-pentachlorobiphenyl increases expressionISONCF4 (Homo sapiens)64804643 more ...CTDPMID:30821169

1 to 20 of 108 rows

Biological Process

  
Object Symbol
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Source
Original Reference(s)
Ncf4Mousephagocytosis involved_inIEAInterPro:IPR0009192290270 InterProGO_REF:0000002
Ncf4Mouserespiratory burst involved_inIEAInterPro:IPR0009192290270 InterProGO_REF:0000002
Ncf4Mousesuperoxide anion generation involved_inIEAUniProtKB:Q15080 and ensembl:ENSP000002488992290270 EnsemblGO_REF:0000107
Ncf4Mousesuperoxide anion generation involved_inISOUniProtKB:Q150802290270 GO_CentralGO_REF:0000119
Ncf4Mousesuperoxide anion generation involved_inIBAPANTHER:PTN001038806 more ...2290270 GO_CentralGO_REF:0000033

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
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Reference
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Source
Original Reference(s)
Ncf4Mousecytoplasm located_inIDA 2290270 PMID:15850784MGIPMID:15850784
Ncf4Mousecytoplasm is_active_inIBAPANTHER:PTN000403558 more ...2290270 GO_CentralGO_REF:0000033
Ncf4Mousecytosol located_inISOUniProtKB:Q150802290270 GO_CentralGO_REF:0000119
Ncf4Mousecytosol located_inISSUniProtKB:Q150802290270 UniProtGO_REF:0000024
Ncf4Mouseendosome membrane located_inISOUniProtKB:Q150802290270 GO_CentralGO_REF:0000119
Ncf4Mouseendosome membrane located_inISSUniProtKB:Q150802290270 UniProtGO_REF:0000024
Ncf4Mousemembrane located_inISSUniProtKB:Q150802290270 UniProtGO_REF:0000024
Ncf4Mousemembrane located_inISOUniProtKB:Q150802290270 GO_CentralGO_REF:0000119
Ncf4MouseNADPH oxidase complex part_ofISOUniProtKB:Q150802290270 GO_CentralGO_REF:0000119
Ncf4MouseNADPH oxidase complex part_ofIEAUniProtKB:Q15080 and ensembl:ENSP000002488992290270 EnsemblGO_REF:0000107
Ncf4MouseNADPH oxidase complex part_ofIBAPANTHER:PTN002696080 and UniProtKB:Q150802290270 GO_CentralGO_REF:0000033
1 to 11 of 11 rows

Molecular Function

  

Imported Annotations - KEGG (archival)

Object Symbol
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Evidence
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Reference
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Source
Original Reference(s)
Ncf4MouseLeishmaniasis pathway  IEA 6907045 KEGGmmu:05140

#
Reference Title
Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. A case-control study of rheumatoid arthritis identifies an associated single nucleotide polymorphism in the NCF4 gene, supporting a role for the NADPH-oxidase complex in autoimmunity. Olsson LM, etal., Arthritis Res Ther. 2007;9(5):R98. doi: 10.1186/ar2299.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8995189   PMID:9434954   PMID:9490028   PMID:10349636   PMID:10447107   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14688330   PMID:15489334  
PMID:15850784   PMID:16141072   PMID:16141073   PMID:16880254   PMID:16990793   PMID:18566430   PMID:18755982   PMID:19283362   PMID:19608974   PMID:20813901   PMID:20818396   PMID:20861461  
PMID:21257963   PMID:21551061   PMID:21677750   PMID:21873635   PMID:21956105   PMID:22075471   PMID:22914050   PMID:24194600   PMID:24550444   PMID:26194095   PMID:27231144   PMID:27543673  
PMID:27626380   PMID:30062795   PMID:32245826   PMID:32325033   PMID:32554809   PMID:36095971   PMID:38355793   PMID:38547647  



Ncf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,128,324 - 78,146,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,129,001 - 78,146,780 (+)EnsemblGRCm39 Ensembl
GRCm381578,244,164 - 78,262,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,244,801 - 78,262,580 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,075,241 - 78,093,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,072,089 - 78,089,829 (+)NCBIMGSCv36mm8
Celera1579,705,722 - 79,723,507 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.1NCBI
NCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,861,006 - 36,878,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,860,988 - 36,878,017 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,257,048 - 37,274,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,586,991 - 35,604,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,581,544 - 35,598,558NCBI
Celera2221,054,984 - 21,075,404 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,219,193 - 20,235,709 (+)NCBIHuRef
CHM1_12237,215,777 - 37,232,815 (+)NCBICHM1_1
T2T-CHM13v2.02237,316,866 - 37,336,974 (+)NCBIT2T-CHM13v2.0
Ncf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,705,926 - 111,723,893 (+)NCBIGRCr8
mRatBN7.27109,825,420 - 109,843,389 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,826,020 - 109,843,389 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,575,804 - 111,592,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,799,365 - 113,816,171 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,768,035 - 113,784,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,481,711 - 119,499,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,482,272 - 119,499,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,473,732 - 119,490,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,167,621 - 116,190,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7106,165,444 - 106,181,739 (+)NCBICelera
Cytogenetic Map7q34NCBI
Ncf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,388,018 - 23,408,090 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,388,456 - 23,405,121 (+)NCBIChiLan1.0ChiLan1.0
NCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,715,341 - 46,735,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,406,644 - 49,426,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,775,590 - 17,795,725 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,611,589 - 35,631,400 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,611,589 - 35,631,400 (+)Ensemblpanpan1.1panPan2
NCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,597,296 - 27,672,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,597,486 - 27,615,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,551,611 - 27,626,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,389,229 - 28,463,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,389,225 - 28,407,201 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,110,753 - 28,185,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,419,256 - 28,493,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,598,068 - 28,672,687 (-)NCBIUU_Cfam_GSD_1.0
Ncf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,991,297 - 11,005,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,001,898 - 4,010,456 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,001,711 - 4,015,253 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,874,953 - 10,994,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,876,147 - 10,994,002 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,477,878 - 8,593,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,560,047 - 19,579,342 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,566,562 - 19,579,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,283,752 - 106,303,762 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,901,934 - 10,918,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,902,035 - 10,918,183 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Ncf4
624 total Variants

Predicted Target Of
Summary Value
Count of predictions:1075
Count of miRNA genes:521
Interacting mature miRNAs:638
Transcripts:ENSMUST00000096357, ENSMUST00000126028, ENSMUST00000133618, ENSMUST00000146147, ENSMUST00000147303, ENSMUST00000148646
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 54 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
15092079Igly6_mIgG glycosylation 6, GP6 (mouse)157410054082674156Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
1558786Msq1_mMAV-1 susceptibility QTL 1 (mouse)Not determined156338964681086436Mouse
15092080Igly7_mIgG glycosylation 7, GP10 (mouse)157779491982674156Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse

1 to 10 of 54 rows
AI451400  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381578,262,378 - 78,262,465UniSTSGRCm38
MGSCv371578,092,808 - 78,092,895UniSTSGRCm37
Celera1579,723,305 - 79,723,392UniSTS
Cytogenetic Map15E1UniSTS
cM Map1547.2UniSTS
Whitehead/MRC_RH15691.52UniSTS
AB002665  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381578,262,379 - 78,262,465UniSTSGRCm38
MGSCv371578,092,809 - 78,092,895UniSTSGRCm37
Celera1579,723,306 - 79,723,392UniSTS
Cytogenetic Map15E1UniSTS
cM Map1547.2UniSTS
Whitehead/MRC_RH15696.99UniSTS






1 to 17 of 17 rows
RefSeq Transcripts NM_001411421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA016555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB002665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL589692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB840090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ168470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U59488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENSMUST00000096357   ⟹   ENSMUSP00000094084
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,129,001 - 78,146,780 (+)Ensembl
GRCm38.p6 Ensembl1578,244,801 - 78,262,580 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,137,446 - 78,144,969 (+)Ensembl
GRCm38.p6 Ensembl1578,253,246 - 78,260,769 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133618   ⟹   ENSMUSP00000121191
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,129,044 - 78,144,954 (+)Ensembl
GRCm38.p6 Ensembl1578,244,844 - 78,260,754 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,139,652 - 78,145,002 (+)Ensembl
GRCm38.p6 Ensembl1578,255,452 - 78,260,802 (+)Ensembl
Ensembl Acc Id: ENSMUST00000147303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,137,232 - 78,146,780 (+)Ensembl
GRCm38.p6 Ensembl1578,253,032 - 78,262,580 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1578,145,078 - 78,146,775 (+)Ensembl
GRCm38.p6 Ensembl1578,260,878 - 78,262,575 (+)Ensembl
RefSeq Acc Id: NM_001411421   ⟹   NP_001398350
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,129,000 - 78,146,780 (+)NCBI
RefSeq Acc Id: NM_001411422   ⟹   NP_001398351
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,129,000 - 78,146,780 (+)NCBI
RefSeq Acc Id: NM_001411423   ⟹   NP_001398352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,128,324 - 78,146,780 (+)NCBI
RefSeq Acc Id: NM_008677   ⟹   NP_032703
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,129,000 - 78,146,780 (+)NCBI
GRCm381578,244,811 - 78,262,580 (+)NCBI
MGSCv371578,075,241 - 78,093,010 (+)RGD
Celera1579,705,722 - 79,723,507 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036159222   ⟹   XP_036015115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,128,987 - 78,146,782 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036159223   ⟹   XP_036015116
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391578,128,968 - 78,144,229 (+)NCBI
Sequence:
RefSeq Acc Id: NP_032703   ⟸   NM_008677
- Peptide Label: isoform 1
- UniProtKB: Q3TBC6 (UniProtKB/Swiss-Prot),   P97369 (UniProtKB/Swiss-Prot),   B6DT57 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000121191   ⟸   ENSMUST00000133618
Ensembl Acc Id: ENSMUSP00000094084   ⟸   ENSMUST00000096357
RefSeq Acc Id: XP_036015116   ⟸   XM_036159223
- Peptide Label: isoform X4
- UniProtKB: A8XU21 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036015115   ⟸   XM_036159222
- Peptide Label: isoform X3
- UniProtKB: Q3TC82 (UniProtKB/TrEMBL)
PB1   PX   SH3

Name Modeler Protein Id AA Range Protein Structure
AF-P97369-F1-model_v2 AlphaFold P97369 1-339 view protein structure

RGD ID:6826256
Promoter ID:MM_KWN:18971
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:OTTMUST00000069709,   OTTMUST00000069710
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,074,611 - 78,075,382 (+)MPROMDB
RGD ID:6826257
Promoter ID:MM_KWN:18972
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000069711,   OTTMUST00000069712,   UC007WOX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,082,561 - 78,083,532 (+)MPROMDB
RGD ID:6826259
Promoter ID:MM_KWN:18973
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000069713
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,085,096 - 78,086,047 (+)MPROMDB
RGD ID:6826260
Promoter ID:MM_KWN:18974
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000069714
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361578,090,361 - 78,091,497 (+)MPROMDB
RGD ID:8684244
Promoter ID:EPDNEW_M20152
Type:initiation region
Name:Ncf4_2
Description:Mus musculus neutrophil cytosolic factor 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20153  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381578,244,800 - 78,244,860EPDNEW
RGD ID:8684246
Promoter ID:EPDNEW_M20153
Type:initiation region
Name:Ncf4_1
Description:Mus musculus neutrophil cytosolic factor 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20152  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381578,244,965 - 78,245,025EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000033358
  ENSMUSG00000071715 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000096357 ENTREZGENE
  ENSMUST00000096357.12 UniProtKB/Swiss-Prot
  ENSMUST00000133618 ENTREZGENE
Gene3D-CATH 3.30.1520.10 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
  SH3 Domains UniProtKB/Swiss-Prot
InterPro NADPH_Oxidase/PX-Domain UniProtKB/Swiss-Prot
  p40phox UniProtKB/Swiss-Prot
  p40phox_SH3 UniProtKB/Swiss-Prot
  PB1-like UniProtKB/Swiss-Prot
  PB1_dom UniProtKB/Swiss-Prot
  PB1_P40 UniProtKB/Swiss-Prot
  Phox UniProtKB/Swiss-Prot
  PX_dom_sf UniProtKB/Swiss-Prot
  PX_p40phox UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:17972 UniProtKB/Swiss-Prot
MGD MGI:109186 ENTREZGENE
NCBI Gene 17972 ENTREZGENE
PANTHER PTHR15706:SF20 UniProtKB/Swiss-Prot
  SH3 MULTIPLE DOMAIN UniProtKB/Swiss-Prot
Pfam PB1 UniProtKB/Swiss-Prot
  PF00787 UniProtKB/Swiss-Prot
  SH3_1 UniProtKB/Swiss-Prot
PhenoGen Ncf4 PhenoGen
PRINTS P40PHOX UniProtKB/Swiss-Prot
  SH3DOMAIN UniProtKB/Swiss-Prot
PROSITE PB1 UniProtKB/Swiss-Prot
  PS50195 UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
SMART PB1 UniProtKB/Swiss-Prot
  SH3 UniProtKB/Swiss-Prot
  SM00312 UniProtKB/Swiss-Prot
Superfamily-SCOP CAD & PB1 domains UniProtKB/Swiss-Prot
  SSF50044 UniProtKB/Swiss-Prot
  SSF64268 UniProtKB/Swiss-Prot
UniProt A8XU21 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 45 rows