Ncf4 (neutrophil cytosolic factor 4) - Rat Genome Database

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Gene: Ncf4 (neutrophil cytosolic factor 4) Chinchilla lanigera
Analyze
Symbol: Ncf4
Name: neutrophil cytosolic factor 4
RGD ID: 8881773
Description: ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); superoxide-generating NADPH oxidase activator activity (ortholog); INVOLVED IN superoxide anion generation (ortholog); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); autosomal recessive chronic granulomatous disease 3 (ortholog); chronic granulomatous disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neutrophil cytosol factor 4; neutrophil cytosolic factor 4, 40kDa
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,388,018 - 23,408,090 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,388,456 - 23,405,121 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ncf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541323,388,018 - 23,408,090 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541323,388,456 - 23,405,121 (+)NCBIChiLan1.0ChiLan1.0
NCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382236,861,006 - 36,878,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2236,860,988 - 36,878,017 (+)EnsemblGRCh38hg38GRCh38
GRCh372237,257,048 - 37,274,057 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362235,586,991 - 35,604,005 (+)NCBINCBI36Build 36hg18NCBI36
Build 342235,581,544 - 35,598,558NCBI
Celera2221,054,984 - 21,075,404 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2220,219,193 - 20,235,709 (+)NCBIHuRef
CHM1_12237,215,777 - 37,232,815 (+)NCBICHM1_1
T2T-CHM13v2.02237,316,866 - 37,336,974 (+)NCBIT2T-CHM13v2.0
Ncf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391578,128,324 - 78,146,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1578,129,001 - 78,146,780 (+)EnsemblGRCm39 Ensembl
GRCm381578,244,164 - 78,262,582 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1578,244,801 - 78,262,580 (+)EnsemblGRCm38mm10GRCm38
MGSCv371578,075,241 - 78,093,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361578,072,089 - 78,089,829 (+)NCBIMGSCv36mm8
Celera1579,705,722 - 79,723,507 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.1NCBI
Ncf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87111,705,926 - 111,723,893 (+)NCBIGRCr8
mRatBN7.27109,825,420 - 109,843,389 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7109,826,020 - 109,843,389 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7111,575,804 - 111,592,610 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07113,799,365 - 113,816,171 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07113,768,035 - 113,784,810 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07119,481,711 - 119,499,426 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7119,482,272 - 119,499,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07119,473,732 - 119,490,872 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47116,167,621 - 116,190,630 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7106,165,444 - 106,181,739 (+)NCBICelera
Cytogenetic Map7q34NCBI
NCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22346,715,341 - 46,735,474 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12249,406,644 - 49,426,776 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02217,775,590 - 17,795,725 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12235,611,589 - 35,631,400 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2235,611,589 - 35,631,400 (+)Ensemblpanpan1.1panPan2
NCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11027,597,296 - 27,672,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1027,597,486 - 27,615,261 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1027,551,611 - 27,626,188 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01028,389,229 - 28,463,826 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1028,389,225 - 28,407,201 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11028,110,753 - 28,185,319 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01028,419,256 - 28,493,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01028,598,068 - 28,672,687 (-)NCBIUU_Cfam_GSD_1.0
Ncf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494510,991,297 - 11,005,134 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364924,001,898 - 4,010,456 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364924,001,711 - 4,015,253 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl510,874,953 - 10,994,014 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1510,876,147 - 10,994,002 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.258,477,878 - 8,593,943 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11919,560,047 - 19,579,342 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1919,566,562 - 19,579,352 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045106,283,752 - 106,303,762 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475210,901,934 - 10,918,106 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475210,902,035 - 10,918,183 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000023419   ⟹   ENSCLAP00000023198
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541323,388,018 - 23,408,090 (+)Ensembl
RefSeq Acc Id: XM_005379170   ⟹   XP_005379227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,388,467 - 23,405,121 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013511618   ⟹   XP_013367072
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541323,388,456 - 23,400,361 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005379227 (Get FASTA)   NCBI Sequence Viewer  
  XP_013367072 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023198
  ENSCLAP00000023198.1
RefSeq Acc Id: XP_005379227   ⟸   XM_005379170
- Peptide Label: isoform X1
- UniProtKB: A0A8C2W502 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013367072   ⟸   XM_013511618
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSCLAP00000023198   ⟸   ENSCLAT00000023419
Protein Domains
PB1   PX   SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023419 ENTREZGENE
  ENSCLAT00000023419.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1520.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro p40phox UniProtKB/TrEMBL
  p40phox_SH3 UniProtKB/TrEMBL
  PB1_dom UniProtKB/TrEMBL
  PB1_P40 UniProtKB/TrEMBL
  PX_dom UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  PX_p40phox UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Ncf4 ENTREZGENE
PANTHER PTHR15706:SF20 UniProtKB/TrEMBL
  SH3 MULTIPLE DOMAIN UniProtKB/TrEMBL
Pfam PB1 UniProtKB/TrEMBL
  PF00787 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PRINTS P40PHOX UniProtKB/TrEMBL
PROSITE PB1 UniProtKB/TrEMBL
  PS50195 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
SMART PB1 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP CAD & PB1 domains UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A8C2W502 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ncf4  neutrophil cytosolic factor 4    neutrophil cytosolic factor 4, 40kDa  Symbol and/or name change 5135510 APPROVED