Mbd4 (methyl-CpG binding domain protein 4) - Rat Genome Database

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Gene: Mbd4 (methyl-CpG binding domain protein 4) Mus musculus
Analyze
Symbol: Mbd4
Name: methyl-CpG binding domain protein 4
RGD ID: 1313886
MGI Page MGI
Description: Enables DNA binding activity. Acts upstream of or within intrinsic apoptotic signaling pathway in response to DNA damage; mitotic G2 DNA damage checkpoint signaling; and response to radiation. Located in cytoplasm and nucleus. Part of chromatin. Is expressed in several structures, including central nervous system; lower urogenital tract; reproductive system; retina; and urethra epithelium. Human ortholog(s) of this gene implicated in colorectal carcinoma; esophagus squamous cell carcinoma; lung cancer; rheumatoid arthritis; and uveal melanoma. Orthologous to human MBD4 (methyl-CpG binding domain 4, DNA glycosylase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Med1; methyl-CpG-binding domain protein 4; methyl-CpG-binding protein MBD4; mismatch-specific DNA N-glycosylase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,817,658 - 115,830,361 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,817,658 - 115,830,332 (-)EnsemblGRCm39 Ensembl
GRCm386115,840,697 - 115,853,400 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,840,697 - 115,853,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv376115,790,715 - 115,803,359 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,808,047 - 115,819,340 (-)NCBIMGSCv36mm8
Celera6117,677,344 - 117,690,709 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-hydroxypropanoic acid  (ISO)
3,N(4)-ethenocytosine  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP)
5-iodo-2'-deoxyuridine  (EXP)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
bortezomib  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
disodium selenite  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
folic acid  (EXP)
FR900359  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
mercury dichloride  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
monosodium L-glutamate  (EXP)
morphine  (EXP)
paracetamol  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
vincristine  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IDA)
cytoplasm  (IDA)
nuclear speck  (ISO)
nucleus  (IBA,IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Inter-individual variation in nucleotide excision repair pathway is modulated by non-synonymous polymorphisms in ERCC4 and MBD4 genes. Allione A, etal., Mutat Res. 2013 Nov-Dec;751-752:49-54. doi: 10.1016/j.mrfmmm.2013.08.005. Epub 2013 Sep 1.
2. Somatic frameshift mutations in the MBD4 gene of sporadic colon cancers with mismatch repair deficiency. Bader S, etal., Oncogene. 1999 Dec 23;18(56):8044-7.
3. On how mammalian transcription factors recognize methylated DNA. Buck-Koehntop BA and Defossez PA, Epigenetics. 2013 Feb;8(2):131-7. doi: 10.4161/epi.23632. Epub 2013 Jan 16.
4. Peptidylarginine deiminase type 4 and methyl-CpG binding domain 4 polymorphisms in Chinese patients with rheumatoid arthritis. Cheng J, etal., J Rheumatol. 2012 Jun;39(6):1159-65. doi: 10.3899/jrheum.120007. Epub 2012 Apr 15.
5. Identification of genetic variants in base excision repair pathway and their associations with risk of esophageal squamous cell carcinoma. Hao B, etal., Cancer Res. 2004 Jun 15;64(12):4378-84.
6. MBD4 gene is associated with rheumatoid arthritis in Chinese patients in Taiwan. Huang CM, etal., Rheumatol Int. 2012 Jan;32(1):117-22. doi: 10.1007/s00296-010-1545-8. Epub 2010 Jul 30.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. Tagging single nucleotide polymorphisms in MBD4 are associated with risk of lung cancer in a Chinese population. Miao R, etal., Lung Cancer. 2008 Dec;62(3):281-6. doi: 10.1016/j.lungcan.2008.03.027. Epub 2008 May 20.
10. Enhanced CpG mutability and tumorigenesis in MBD4-deficient mice. Millar CB, etal., Science. 2002 Jul 19;297(5580):403-5.
11. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
12. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
13. Mouse MP Annotation Import Pipeline RGD automated import pipeline
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. The Glu346Lys polymorphism and frameshift mutations of the Methyl-CpG Binding Domain 4 gene in gastrointestinal cancer. Song JH, etal., Neoplasma. 2009;56(4):343-7.
16. Identifying new candidate genes for hereditary facial paresis on chromosome 3q21-q22 by RNA in situ hybridization in mouse. van der Zwaag B, etal., Genomics 2005 Jul;86(1):55-67. Epub 2005 Apr 20.
17. Validation of biomarkers associated with 5-fluorouracil and thymidylate synthase in colorectal cancer. Xi Y, etal., Oncol Rep. 2008 Jan;19(1):257-62.
18. Methyl-CpG binding domain 4 tagging polymorphisms and esophageal cancer risk in a Chinese population. Yin J, etal., Eur J Cancer Prev. 2014 Aug 26.
Additional References at PubMed
PMID:9774669   PMID:10349636   PMID:10441743   PMID:10499592   PMID:11042159   PMID:11076861   PMID:11336497   PMID:11371345   PMID:12417741   PMID:12456671   PMID:12477932   PMID:12574322  
PMID:12725522   PMID:14562041   PMID:14614141   PMID:15184874   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16723356   PMID:17132730   PMID:17546630   PMID:18452947  
PMID:18784354   PMID:18799693   PMID:19000668   PMID:19502488   PMID:20300987   PMID:20595612   PMID:21765423   PMID:21873635   PMID:22740654   PMID:23154201   PMID:23316048   PMID:23920106  
PMID:24205214   PMID:25358258   PMID:26503472   PMID:27086921   PMID:27777312   PMID:34321999   PMID:34592200   PMID:37068447  


Genomics

Comparative Map Data
Mbd4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396115,817,658 - 115,830,361 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6115,817,658 - 115,830,332 (-)EnsemblGRCm39 Ensembl
GRCm386115,840,697 - 115,853,400 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6115,840,697 - 115,853,371 (-)EnsemblGRCm38mm10GRCm38
MGSCv376115,790,715 - 115,803,359 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366115,808,047 - 115,819,340 (-)NCBIMGSCv36mm8
Celera6117,677,344 - 117,690,709 (-)NCBICelera
Cytogenetic Map6E3NCBI
cM Map653.72NCBI
MBD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,430,947 - 129,439,948 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,430,947 - 129,440,179 (-)EnsemblGRCh38hg38GRCh38
GRCh373129,149,790 - 129,158,791 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,632,483 - 130,641,542 (-)NCBINCBI36Build 36hg18NCBI36
Build 343130,632,490 - 130,641,550NCBI
Celera3127,576,629 - 127,585,688 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,533,265 - 126,542,500 (-)NCBIHuRef
CHM1_13129,112,922 - 129,122,157 (-)NCBICHM1_1
T2T-CHM13v2.03132,175,773 - 132,184,774 (-)NCBIT2T-CHM13v2.0
Mbd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84150,565,646 - 150,577,433 (-)NCBIGRCr8
mRatBN7.24148,893,049 - 148,904,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4148,894,280 - 148,904,982 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.04147,744,673 - 147,756,462 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4147,746,186 - 147,756,294 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04211,028,384 - 211,040,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44151,972,272 - 151,981,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4137,783,059 - 137,794,850 (-)NCBICelera
Cytogenetic Map4q42NCBI
Mbd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542917,858,937 - 17,869,262 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542917,858,656 - 17,868,111 (+)NCBIChiLan1.0ChiLan1.0
MBD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,363,949 - 127,372,866 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,368,337 - 127,377,271 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,489,125 - 126,498,034 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13133,842,156 - 133,851,450 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,839,643 - 133,851,450 (-)Ensemblpanpan1.1panPan2
MBD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1205,716,162 - 5,725,068 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl205,716,239 - 5,724,881 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha205,753,617 - 5,762,527 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0205,745,974 - 5,754,885 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl205,745,978 - 5,754,919 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1205,461,788 - 5,470,699 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0205,814,748 - 5,823,669 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0205,790,467 - 5,799,355 (+)NCBIUU_Cfam_GSD_1.0
MBD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1368,816,679 - 68,828,580 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11368,816,677 - 68,828,559 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MBD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,616,840 - 51,626,232 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,616,803 - 51,626,224 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,838,792 - 114,848,231 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mbd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624872451,118 - 462,509 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624872453,303 - 462,661 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mbd4
207 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1316
Count of miRNA genes:603
Interacting mature miRNAs:754
Transcripts:ENSMUST00000032469, ENSMUST00000122816, ENSMUST00000133830, ENSMUST00000147282
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683690851146954059Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684099474118099474Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687480321121480516Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined688982366122982564Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690772571124772807Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692584287146330736Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined694981612128981699Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696324286130324483Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696324286130324483Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96632912146535124Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96632912146535124Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696632912146535124Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698219814132219938Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698483798145881170Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698694477132694676Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698908709132916997Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699132089133132228Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103754405136400690Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104480321127019938Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104480321136400690Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined105982366120894102Mouse
10412207Cypr5_mcytokine production 5 (mouse)Not determined6110815180144815323Mouse
13463481Mcvq14_mmean corpuscular volume QTL 14 (mouse)6111142448145142541Mouse
10043891Tilss4_mTNF-induced lethal shock susceptibility 3 (mouse)Not determined6112246918125333748Mouse
11252138Clas1_mcarcinogen-induced lung adenoma susceptibility 1 (mouse)6112246918146954059Mouse
8552704Cia43_mcollagen induced arthritis QTL 43 (mouse)Not determined6114159241119737532Mouse
4140980Mvwf2_mmodifier of von Willebrand factor 2 (mouse)Not determined114345693145601739Mouse
1301658Radpf3_mradiation pulmonary fibrosis 3 (mouse)Not determined6115219814146330736Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
1301083Bhr5_mbronchial hyperresponsiveness 5 (mouse)Not determined6115694477132578150Mouse

Markers in Region
Mbd4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv376115,795,419 - 115,795,634UniSTSGRCm37
MGSCv376115,799,634 - 115,800,320UniSTSGRCm37
Celera6117,682,039 - 117,682,254UniSTS
Celera6117,686,984 - 117,687,670UniSTS
Cytogenetic Map6E3UniSTS
cM Map650.3UniSTS
cM Map650.3UniSTS
PMC137523P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386115,849,001 - 115,849,535UniSTSGRCm38
MGSCv376115,799,019 - 115,799,553UniSTSGRCm37
Celera6117,686,369 - 117,686,903UniSTS
Cytogenetic Map6E3UniSTS
cM Map650.3UniSTS
AF072249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386115,842,406 - 115,842,490UniSTSGRCm38
MGSCv376115,792,424 - 115,792,508UniSTSGRCm37
Celera6117,679,053 - 117,679,137UniSTS
Cytogenetic Map6E3UniSTS
cM Map650.3UniSTS
Whitehead/MRC_RH61193.27UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Mbd4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386115,849,616 - 115,850,302UniSTSGRCm38
MGSCv376115,799,634 - 115,800,320UniSTSGRCm37
Celera6117,686,984 - 117,687,670UniSTS
Cytogenetic Map6E3UniSTS
cM Map650.3UniSTS
Mbd4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386115,845,401 - 115,845,616UniSTSGRCm38
MGSCv376115,795,419 - 115,795,634UniSTSGRCm37
Celera6117,682,039 - 117,682,254UniSTS
Cytogenetic Map6E3UniSTS
Mbd4  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6E3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001410106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001785104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA185422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC109169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF072249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF120996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV570666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ885775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032469   ⟹   ENSMUSP00000032469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6115,817,658 - 115,830,332 (-)Ensembl
GRCm38.p6 Ensembl6115,840,697 - 115,853,371 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122816   ⟹   ENSMUSP00000145433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6115,824,653 - 115,830,249 (-)Ensembl
GRCm38.p6 Ensembl6115,847,692 - 115,853,288 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133830
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6115,818,160 - 115,825,666 (-)Ensembl
GRCm38.p6 Ensembl6115,841,199 - 115,848,705 (-)Ensembl
RefSeq Acc Id: ENSMUST00000147282   ⟹   ENSMUSP00000125619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6115,819,305 - 115,830,326 (-)Ensembl
GRCm38.p6 Ensembl6115,842,344 - 115,853,365 (-)Ensembl
RefSeq Acc Id: ENSMUST00000203643   ⟹   ENSMUSP00000144930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6115,819,305 - 115,825,927 (-)Ensembl
GRCm38.p6 Ensembl6115,842,344 - 115,848,966 (-)Ensembl
RefSeq Acc Id: NM_001410106   ⟹   NP_001397035
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NM_001410107   ⟹   NP_001397036
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NM_001410108   ⟹   NP_001397037
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NM_001410109   ⟹   NP_001397038
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,823,860 - 115,830,328 (-)NCBI
RefSeq Acc Id: NM_001410110   ⟹   NP_001397039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,823,860 - 115,830,328 (-)NCBI
RefSeq Acc Id: NM_010774   ⟹   NP_034904
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
GRCm386115,840,697 - 115,853,341 (-)NCBI
MGSCv376115,790,715 - 115,803,359 (-)RGD
Celera6117,677,344 - 117,690,709 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176942
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NR_176943
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NR_176944
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: NR_176945
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,328 (-)NCBI
RefSeq Acc Id: XM_006505683   ⟹   XP_006505746
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,825,685 (-)NCBI
GRCm386115,840,697 - 115,848,859 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001785104
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,332 (-)NCBI
GRCm386115,840,697 - 115,853,399 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942916
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,361 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942917
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396115,817,658 - 115,830,332 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_034904   ⟸   NM_010774
- Peptide Label: isoform 1
- UniProtKB: Q8R3R3 (UniProtKB/Swiss-Prot),   Q792D2 (UniProtKB/Swiss-Prot),   Q9Z2D7 (UniProtKB/Swiss-Prot),   A0A0R4J0A8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505746   ⟸   XM_006505683
- Peptide Label: isoform X3
- UniProtKB: Q3UGS3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000144930   ⟸   ENSMUST00000203643
RefSeq Acc Id: ENSMUSP00000032469   ⟸   ENSMUST00000032469
RefSeq Acc Id: ENSMUSP00000125619   ⟸   ENSMUST00000147282
RefSeq Acc Id: ENSMUSP00000145433   ⟸   ENSMUST00000122816
RefSeq Acc Id: NP_001397036   ⟸   NM_001410107
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001397037   ⟸   NM_001410108
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001397035   ⟸   NM_001410106
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001397038   ⟸   NM_001410109
- Peptide Label: isoform 5
- UniProtKB: A0A0N4SWA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001397039   ⟸   NM_001410110
- Peptide Label: isoform 6
- UniProtKB: Q3TU27 (UniProtKB/TrEMBL)
Protein Domains
HhH-GPD   MBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z2D7-F1-model_v2 AlphaFold Q9Z2D7 1-554 view protein structure

Promoters
RGD ID:6839608
Promoter ID:MM_KWN:47264
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000056058,   UC009DJE.1,   UC009DJF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366115,803,226 - 115,803,767 (-)MPROMDB
RGD ID:6890738
Promoter ID:EPDNEW_M8820
Type:initiation region
Name:Mbd4_1
Description:Mus musculus methyl-CpG binding domain protein 4 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386115,853,358 - 115,853,418EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333850 AgrOrtholog
Ensembl Genes ENSMUSG00000030322 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032469 ENTREZGENE
  ENSMUST00000032469.13 UniProtKB/TrEMBL
  ENSMUST00000122816 ENTREZGENE
  ENSMUST00000122816.3 UniProtKB/TrEMBL
  ENSMUST00000147282 ENTREZGENE
  ENSMUST00000147282.4 UniProtKB/TrEMBL
  ENSMUST00000203643.2 UniProtKB/TrEMBL
InterPro DNA-bd_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNA_glycosylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HhH-GPD_domain UniProtKB/TrEMBL
  MBD4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MeCP2/MBD4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Methyl_CpG_DNA-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17193 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1333850 ENTREZGENE
NCBI Gene 17193 ENTREZGENE
PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR15074 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HhH-GPD UniProtKB/TrEMBL
  MBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB MBD4 RGD
PhenoGen Mbd4 PhenoGen
PIRSF Methyl_CpG_bd_MBD4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54171 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SV30_MOUSE UniProtKB/TrEMBL
  A0A0N4SWA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0R4J0A8 ENTREZGENE, UniProtKB/TrEMBL
  MBD4_MOUSE UniProtKB/Swiss-Prot
  Q3TU27 ENTREZGENE, UniProtKB/TrEMBL
  Q3UG18_MOUSE UniProtKB/TrEMBL
  Q3UGS3 ENTREZGENE, UniProtKB/TrEMBL
  Q792D2 ENTREZGENE
  Q8R3R3 ENTREZGENE
  Q9Z2D7 ENTREZGENE
UniProt Secondary Q792D2 UniProtKB/Swiss-Prot
  Q8R3R3 UniProtKB/Swiss-Prot