TBCE (tubulin folding cofactor E) - Rat Genome Database

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Gene: TBCE (tubulin folding cofactor E) Homo sapiens
Analyze
Symbol: TBCE
Name: tubulin folding cofactor E
RGD ID: 1313614
HGNC Page HGNC:11582
Description: Predicted to enable alpha-tubulin binding activity. Involved in mitotic spindle organization and post-chaperonin tubulin folding pathway. Predicted to be located in microtubule. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm. Implicated in Kenny-Caffey syndrome type 1; hypoparathyroidism; and hypoparathyroidism-retardation-dysmorphism syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: HRD; hypoparathyroidism, growth and mental retardation, and dysmorphism; KCS; KCS1; Kenny-Caffey syndrome; pac2; PEAMO; tubulin-folding cofactor E; tubulin-specific chaperone E
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,367,427 - 235,452,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,367,360 - 235,452,443 (+)EnsemblGRCh38hg38GRCh38
GRCh371235,530,742 - 235,615,756 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,597,351 - 233,678,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 341231,856,811 - 231,938,321NCBI
Celera1208,773,486 - 208,855,524 (+)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1205,979,723 - 206,063,927 (+)NCBIHuRef
CHM1_11236,803,044 - 236,884,877 (+)NCBICHM1_1
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
TBCEHumanDwarfism  IAGP 1599303Kenny-Caffey syndrome , OMIM:244460 RGD 
TBCEHumanhypoparathyroidism  IAGP 1599303hypoparathyroidism-retardation-dysmorphism syndrome and OMIM:241410 RGD 
1 to 20 of 39 rows
Object Symbol
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Reference
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Original Reference(s)
TBCEHumanChediak-Higashi syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chédiak-Higashi syndromeClinVarPMID:28492532
TBCEHumanChediak-Higashi syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chédiak-Higashi syndromeClinVarPMID:11857544 more ...
TBCEHumancommon variable immunodeficiency 14  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency more ...ClinVar 
TBCEHumancongenital muscular dystrophy-dystroglycanopathy type A11  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 11ClinVarPMID:26663670 more ...
TBCEHumancongenital muscular dystrophy-dystroglycanopathy type A11  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 11ClinVarPMID:23453667 and PMID:28492532
TBCEHumancongenital muscular dystrophy-dystroglycanopathy type A11  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 11ClinVarPMID:28492532
TBCEHumancongenital muscular dystrophy-dystroglycanopathy type A11  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a and 11ClinVarPMID:25741868 and PMID:28492532
TBCEHumandisorder of sexual development  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Disorder of sexual differentiationClinVarPMID:16199547 more ...
TBCEHumangastrointestinal stromal tumor  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
TBCEHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:12389028 more ...
TBCEHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
TBCEHumangenetic disease  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:17576681 more ...
TBCEHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:16199547 more ...
TBCEHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
TBCEHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hypoparathyroidism-retardation-dysmorphism syndromeClinVarPMID:12389028
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Hypoparathyroidism-retardation-dysmorphism syndromeClinVarPMID:25741868
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Hypoparathyroidism-retardation-dysmorphism syndromeClinVarPMID:25741868 more ...
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:25741868 and PMID:28492532
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP (Homo sapiens) more ...8554872ClinVar more ...ClinVarPMID:28492532
1 to 20 of 39 rows
Object Symbol
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Original Reference(s)
TBCEHumanbacterial infectious disease  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
TBCEHumanCraniofacial Abnormalities  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
TBCEHumanFacies  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
TBCEHumanKenny-Caffey syndrome type 1  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
TBCEHumanKenny-Caffey syndrome type 2  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
TBCEHumanosteosclerosis  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:12389028
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
TBCEHumanhypoparathyroidism-retardation-dysmorphism syndrome  IAGP 7240710 OMIM 
TBCEHumanKenny-Caffey syndrome type 1  IAGP 7240710 OMIM 
TBCEHumanProgressive Encephalopathy with Amyotrophy and Optic Atrophy  IAGP 7240710 OMIM 

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Object Symbol
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Original Reference(s)
TBCEHuman17alpha-ethynylestradiol decreases expressionISOTbce (Rattus norvegicus)6480464Ethinyl Estradiol results in decreased expression of TBCE mRNACTDPMID:29097150
TBCEHuman17beta-estradiol increases expressionISOTbce (Mus musculus)6480464Estradiol results in increased expression of TBCE mRNACTDPMID:39298647
TBCEHuman2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOTbce (Mus musculus)64804642 more ...CTDPMID:30294300
TBCEHuman2,3,7,8-tetrachlorodibenzodioxine increases expressionISOTbce (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of TBCE mRNACTDPMID:33387578
TBCEHuman2,4-dinitrotoluene affects expressionISOTbce (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of TBCE mRNACTDPMID:21346803
TBCEHuman2,6-dinitrotoluene affects expressionISOTbce (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of TBCE mRNACTDPMID:21346803
TBCEHuman4,4'-diaminodiphenylmethane decreases expressionISOTbce (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in decreased expression of TBCE mRNACTDPMID:18648102
TBCEHuman4,4'-sulfonyldiphenol increases expressionISOTbce (Mus musculus)6480464bisphenol S results in increased expression of TBCE mRNACTDPMID:39298647
TBCEHuman4,4'-sulfonyldiphenol multiple interactionsISOTbce (Rattus norvegicus)6480464[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of TBCE mRNACTDPMID:36041667
TBCEHuman4-hydroxyphenyl retinamide increases expressionISOTbce (Mus musculus)6480464Fenretinide results in increased expression of TBCE mRNACTDPMID:28973697
TBCEHuman5-fluorouracil affects response to substanceEXP 6480464TBCE protein affects the susceptibility to FluorouracilCTDPMID:16217747
TBCEHumanaflatoxin B1 increases expressionISOTbce (Mus musculus)6480464Aflatoxin B1 results in increased expression of TBCE mRNACTDPMID:19770486
TBCEHumanaflatoxin B1 increases methylationEXP 6480464Aflatoxin B1 results in increased methylation of TBCE intronCTDPMID:30157460
TBCEHumanall-trans-retinoic acid decreases expressionEXP 6480464Tretinoin results in decreased expression of TBCE mRNACTDPMID:33167477
TBCEHumanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of TBCE mRNACTDPMID:33212167
TBCEHumanAroclor 1254 decreases expressionISOTbce (Mus musculus)6480464Chlorodiphenyl (54% Chlorine) results in decreased expression of TBCE mRNACTDPMID:23650126
TBCEHumanarsane multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of TBCE mRNACTDPMID:39836092
TBCEHumanarsenic atom multiple interactionsEXP 6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of TBCE mRNACTDPMID:39836092
TBCEHumanarsenite(3-) increases expressionISOTbce (Mus musculus)6480464arsenite results in increased expression of TBCE proteinCTDPMID:37955338
TBCEHumanarsenite(3-) multiple interactionsEXP 6480464arsenite promotes the reaction [G3BP1 protein binds to TBCE mRNA]CTDPMID:32406909

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Biological Process
1 to 16 of 16 rows

  
Object Symbol
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Reference
Notes
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Original Reference(s)
TBCEHumanadult locomotory behavior acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanaxonogenesis acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumandevelopmental growth acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanisoprenoid biosynthetic process involved_inIEAInterPro:IPR000092150520179 InterProGO_REF:0000002
TBCEHumanmicrotubule cytoskeleton organization acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanmicrotubule cytoskeleton organization involved_inIBAFB:FBgn0033055 more ...150520179 GO_CentralGO_REF:0000033
TBCEHumanmicrotubule cytoskeleton organization involved_inIMP 150520179 PMID:27666369UniProtPMID:27666369
TBCEHumanmitotic spindle organization involved_inIMP 150520179 PMID:27666369UniProtPMID:27666369
TBCEHumanmuscle atrophy acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanperipheral nervous system neuron axonogenesis acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanpost-chaperonin tubulin folding pathway involved_inIDA 150520179 PMID:11847227UniProtPMID:11847227
TBCEHumanpost-chaperonin tubulin folding pathway involved_inIBAPANTHER:PTN001031924 and UniProtKB:Q15813150520179 GO_CentralGO_REF:0000033
TBCEHumanpost-embryonic development acts_upstream_of_or_withinIEAUniProtKB:Q8CIV8 and ensembl:ENSMUSP00000047880150520179 EnsemblGO_REF:0000107
TBCEHumanprotein folding involved_inTAS 150520179 PMID:8706133UniProtPMID:8706133
TBCEHumantranslation involved_inIEAInterPro:IPR001931150520179 InterProGO_REF:0000002
TBCEHumantubulin complex assembly involved_inIBAPANTHER:PTN001031924 and SGD:S000000809150520179 GO_CentralGO_REF:0000033
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Cellular Component
1 to 9 of 9 rows

  
Object Symbol
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Reference
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Original Reference(s)
TBCEHumancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
TBCEHumancytoplasm is_active_inIBAFB:FBgn0033055 more ...150520179 GO_CentralGO_REF:0000033
TBCEHumancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
TBCEHumancytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
TBCEHumancytoskeleton located_inIEAUniProtKB-SubCell:SL-0090150520179 UniProtGO_REF:0000044
TBCEHumanmicrotubule located_inTAS 150520179 PMID:8706133PINCPMID:8706133
TBCEHumanribonucleoprotein complex part_ofIEAUniProtKB-KW:KW-0687150520179 UniProtGO_REF:0000043
TBCEHumanribosome located_inIEAInterPro:IPR001931150520179 InterProGO_REF:0000002
TBCEHumanribosome located_inIEAUniProtKB-KW:KW-0689150520179 UniProtGO_REF:0000043
1 to 9 of 9 rows

Molecular Function

  
Object Symbol
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Original Reference(s)
TBCEHumanalpha-tubulin binding enablesIBAPANTHER:PTN001031924 and SGD:S000000809150520179 GO_CentralGO_REF:0000033
TBCEHumancatalytic activity enablesIEAARBA:ARBA00027533150520179 UniProtGO_REF:0000117
TBCEHumanprenyltransferase activity enablesIEAInterPro:IPR000092150520179 InterProGO_REF:0000002
TBCEHumanprotein binding enablesIPIUniProtKB:Q9BTW9150520179 PMID:27666374UniProtPMID:27666374
TBCEHumanprotein-folding chaperone binding enablesTAS 150520179 PMID:8706133PINCPMID:8706133
TBCEHumanstructural constituent of ribosome enablesIEAInterPro:IPR001931150520179 InterProGO_REF:0000002

1 to 20 of 169 rows
Object Symbol
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Evidence
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Reference
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Original Reference(s)
TBCEHumanAbnormal dental enamel morphology  IAGP 8699517 HPOORPHA:2323
TBCEHumanAbnormal pinna morphology  IAGP 8699517 HPOORPHA:2323
TBCEHumanAbnormality of the dentition  IAGP 8699517 HPOORPHA:2323
TBCEHumanAbsent speech  IAGP 8699517 HPOMIM:617207
TBCEHumanAnarthria  IAGP 8699517 HPOORPHA:496756
TBCEHumanAnemia  IAGP 8699517 HPOMIM:244460
TBCEHumanAplasia/Hypoplasia affecting the eye  IAGP 8699517 HPOORPHA:2323
TBCEHumanAstigmatism  IAGP 8699517 HPOORPHA:2323
TBCEHumanAtaxia  IAGP 8699517 HPOMIM:617207
TBCEHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:241410
TBCEHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:617207
TBCEHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:244460
TBCEHumanAxial hypotonia  IAGP 8699517 HPOMIM:241410
TBCEHumanBifid uvula  IAGP 8699517 HPOMIM:241410
TBCEHumanBirth length less than 3rd percentile  IAGP 8699517 HPOMIM:244460
TBCEHumanCalvarial osteosclerosis  IAGP 8699517 HPOMIM:244460
TBCEHumanCalvarial osteosclerosis  IAGP 8699517 HPOORPHA:93324
TBCEHumanCarious teeth  IAGP 8699517 HPOMIM:244460
TBCEHumanCarious teeth  IAGP 8699517 HPOORPHA:93324
TBCEHumanCellular immunodeficiency  IAGP 8699517 HPOORPHA:2323
1 to 20 of 169 rows
Object Symbol
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Qualifier
Evidence
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Reference
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Source
Original Reference(s)
TBCEHumanGastrointestinal stroma tumor  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
TBCEHumanMicrocephaly  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: MicrocephalyClinVarPMID:25741868 and PMID:28492532
TBCEHumanParathyroid carcinoma  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. Mutation of TBCE causes hypoparathyroidism-retardation-dysmorphism and autosomal recessive Kenny-Caffey syndrome. Parvari R, etal., Nat Genet. 2002 Nov;32(3):448-52. Epub 2002 Oct 21.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
PMID:8567715   PMID:8706133   PMID:9265649   PMID:9634513   PMID:9806825   PMID:9891010   PMID:11847227   PMID:12389029   PMID:12446740   PMID:12477932   PMID:12665801   PMID:14702039  
PMID:15489334   PMID:16344560   PMID:16710414   PMID:16712791   PMID:17008776   PMID:17184771   PMID:18029348   PMID:18262179   PMID:19168853   PMID:19297412   PMID:19491227   PMID:19557161  
PMID:20103624   PMID:20201926   PMID:20204449   PMID:20379614   PMID:21873635   PMID:22863883   PMID:22940919   PMID:23973072   PMID:25908846   PMID:25921289   PMID:26186194   PMID:26231322  
PMID:26344197   PMID:26638075   PMID:27173435   PMID:27666369   PMID:27666374   PMID:28514442   PMID:28583220   PMID:28718761   PMID:28986522   PMID:30638765   PMID:32176739   PMID:32275946  
PMID:32694731   PMID:32994395   PMID:33462405   PMID:33845483   PMID:33961781   PMID:34079125   PMID:34373451   PMID:34709727   PMID:34941261   PMID:35032548   PMID:35063084   PMID:35256949  
PMID:35271311   PMID:35384245   PMID:35509820   PMID:35831314   PMID:35944360   PMID:36215168   PMID:36258138   PMID:36897256   PMID:37314216   PMID:37827155   PMID:38177924   PMID:39147351  
PMID:39231216  



TBCE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,367,427 - 235,452,443 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,367,360 - 235,452,443 (+)EnsemblGRCh38hg38GRCh38
GRCh371235,530,742 - 235,615,756 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361233,597,351 - 233,678,903 (+)NCBINCBI36Build 36hg18NCBI36
Build 341231,856,811 - 231,938,321NCBI
Celera1208,773,486 - 208,855,524 (+)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1205,979,723 - 206,063,927 (+)NCBIHuRef
CHM1_11236,803,044 - 236,884,877 (+)NCBICHM1_1
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBIT2T-CHM13v2.0
Tbce
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391314,172,532 - 14,214,235 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1314,172,534 - 14,214,223 (-)EnsemblGRCm39 Ensembl
GRCm381313,997,947 - 14,039,650 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1313,997,949 - 14,039,638 (-)EnsemblGRCm38mm10GRCm38
MGSCv371314,090,218 - 14,131,867 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361313,790,077 - 13,831,726 (-)NCBIMGSCv36mm8
Celera1314,305,650 - 14,346,667 (-)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.29NCBI
Tbce
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81755,983,627 - 56,031,578 (+)NCBIGRCr8
mRatBN7.21751,290,143 - 51,336,090 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1751,290,202 - 51,336,089 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1754,459,035 - 54,504,526 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01758,461,975 - 58,507,461 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01752,593,177 - 52,638,508 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01753,983,126 - 54,029,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1753,983,182 - 54,029,027 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01751,676,746 - 51,723,130 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41759,485,451 - 59,533,041 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11759,496,283 - 59,543,873 (+)NCBI
Celera1747,297,977 - 47,343,424 (+)NCBICelera
Cytogenetic Map17q12.1NCBI
Tbce
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,502,897 - 4,558,697 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554924,502,705 - 4,573,126 (-)NCBIChiLan1.0ChiLan1.0
TBCE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,729,178 - 13,856,775 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,941,276 - 14,044,027 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01210,881,078 - 211,008,686 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,929,658 - 216,020,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,929,658 - 216,020,613 (+)Ensemblpanpan1.1panPan2
TBCE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.144,490,892 - 4,569,401 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl44,490,994 - 4,569,357 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha44,473,098 - 4,551,614 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.044,512,625 - 4,591,187 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl44,512,629 - 4,591,155 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.144,523,866 - 4,602,326 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,641,317 - 4,719,844 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,862,950 - 4,941,668 (-)NCBIUU_Cfam_GSD_1.0
Tbce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,882,963 - 40,931,750 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648417,046,284 - 17,095,744 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648417,048,187 - 17,097,414 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBCE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,816,668 - 55,901,171 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11455,816,663 - 55,901,215 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,954,790 - 59,986,383 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBCE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12572,544,942 - 72,616,716 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2572,545,012 - 72,612,622 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605574,568,863 - 74,652,576 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbce
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477515,067,044 - 15,133,008 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477515,067,044 - 15,132,690 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in TBCE
582 total Variants

1 to 10 of 873 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001199138.2(NLRC4):c.862C>G (p.Arg288Gly) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001853665]|not provided [RCV000521468] Chr2:32251002 [GRCh38]
Chr2:32476071 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1999C>T (p.Arg667Trp) single nucleotide variant not provided [RCV000523688] Chr2:32249865 [GRCh38]
Chr2:32474934 [GRCh37]
Chr2:2p22.3
uncertain significance
NM_001199138.2(NLRC4):c.1776C>T (p.Pro592=) single nucleotide variant Autoinflammatory syndrome [RCV002264295]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001394564] Chr2:32250088 [GRCh38]
Chr2:32475157 [GRCh37]
Chr2:2p22.3
likely benign
NM_001199138.2(NLRC4):c.2785G>T (p.Ala929Ser) single nucleotide variant Autoinflammatory syndrome [RCV002263807]|NLRC4-related disorder [RCV003925705]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000546974]|not provided [RCV002263806]|not specified [RCV001821634] Chr2:32224763 [GRCh38]
Chr2:32449832 [GRCh37]
Chr2:2p22.3
benign
NM_001199138.2(NLRC4):c.1022T>C (p.Val341Ala) single nucleotide variant Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV000144517]|Periodic fever-infantile enterocolitis-autoinflammatory syndrome [RCV001857479]|Syndrome of entercolitis and autoinflmmation caused by mutation of NLRC4 (SCAN4) [RCV000132764]|not provided [RCV000434682] Chr2:32250842 [GRCh38]
Chr2:32475911 [GRCh37]
Chr2:2p22.3
pathogenic
GRCh38/hg38 2p25.3-16.1(chr2:66097-55570637)x3 copy number gain See cases [RCV000052933] Chr2:66097..55570637 [GRCh38]
Chr2:66097..55797773 [GRCh37]
Chr2:56097..55651277 [NCBI36]
Chr2:2p25.3-16.1
pathogenic
GRCh38/hg38 2p23.1-22.3(chr2:31370181-32512769)x1 copy number loss See cases [RCV000053981] Chr2:31370181..32512769 [GRCh38]
Chr2:31593047..32737836 [GRCh37]
Chr2:31446551..32591340 [NCBI36]
Chr2:2p23.1-22.3
pathogenic
NM_001199138.1(NLRC4):c.1912G>A (p.Glu638Lys) single nucleotide variant Malignant melanoma [RCV000065568] Chr2:32249952 [GRCh38]
Chr2:32475021 [GRCh37]
Chr2:32328525 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.1518G>A (p.Met506Ile) single nucleotide variant Malignant melanoma [RCV000065569] Chr2:32250346 [GRCh38]
Chr2:32475415 [GRCh37]
Chr2:32328919 [NCBI36]
Chr2:2p22.3
not provided
NM_001199138.1(NLRC4):c.2249G>A (p.Arg750Gln) single nucleotide variant Malignant melanoma [RCV000060559] Chr2:32249615 [GRCh38]
Chr2:32474684 [GRCh37]
Chr2:32328188 [NCBI36]
Chr2:2p22.3
not provided
1 to 10 of 873 rows

Predicted Target Of
Summary Value
Count of predictions:758
Count of miRNA genes:496
Interacting mature miRNAs:554
Transcripts:ENST00000366601, ENST00000406207, ENST00000461651, ENST00000465463, ENST00000472011, ENST00000482230, ENST00000543662
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597029716GWAS1125790_Hself reported educational attainment QTL GWAS1125790 (human)5e-08self reported educational attainment1235436814235436815Human
597085524GWAS1181598_Htype 2 diabetes mellitus QTL GWAS1181598 (human)7e-10type 2 diabetes mellitus1235378708235378709Human
597108533GWAS1204607_Hmathematical ability QTL GWAS1204607 (human)5e-14mathematical ability1235395489235395490Human
597347513GWAS1443587_Hlean body mass QTL GWAS1443587 (human)8e-11body lean mass (VT:0010483)total body lean mass (CMO:0003950)1235407319235407320Human
597085489GWAS1181563_Htype 2 diabetes mellitus QTL GWAS1181563 (human)2e-11type 2 diabetes mellitus1235378708235378709Human
597115967GWAS1212041_Hmathematical ability QTL GWAS1212041 (human)1e-10mathematical ability1235413634235413635Human
597121246GWAS1217320_Hblood protein measurement QTL GWAS1217320 (human)2e-21blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1235410171235410172Human
597418706GWAS1514780_Hself reported educational attainment QTL GWAS1514780 (human)2e-12self reported educational attainment1235433937235433938Human
597026232GWAS1122306_Hblood protein measurement QTL GWAS1122306 (human)2e-09blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1235431636235431637Human
597507472GWAS1603546_Hself reported educational attainment QTL GWAS1603546 (human)2e-16self reported educational attainment1235433937235433938Human

1 to 10 of 21 rows
SGC38288  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,599,741 - 235,599,993UniSTSGRCh37
Build 361233,666,364 - 233,666,616RGDNCBI36
Celera1208,842,985 - 208,843,237RGD
Cytogenetic Map1q42.3UniSTS
HuRef1206,051,361 - 206,051,613UniSTS
GeneMap99-GB4 RH Map1740.49UniSTS
Whitehead-RH Map1910.4UniSTS
AL010041  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,572,240 - 235,572,382UniSTSGRCh37
Build 361233,638,863 - 233,639,005RGDNCBI36
Celera1208,814,999 - 208,815,141RGD
Cytogenetic Map1q42.3UniSTS
HuRef1206,019,984 - 206,020,126UniSTS
RH119203  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,601,914 - 235,602,195UniSTSGRCh37
Build 361233,668,537 - 233,668,818RGDNCBI36
Celera1208,845,158 - 208,845,439RGD
Cytogenetic Map1q42.3UniSTS
HuRef1206,053,534 - 206,053,815UniSTS
SHGC-148032  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,539,372 - 235,539,674UniSTSGRCh37
Build 361233,605,995 - 233,606,297RGDNCBI36
Celera1208,782,133 - 208,782,435RGD
Cytogenetic Map1q42.3UniSTS
HuRef1205,987,151 - 205,987,453UniSTS
SHGC-76555  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,599,736 - 235,599,898UniSTSGRCh37
Build 361233,666,359 - 233,666,521RGDNCBI36
Celera1208,842,980 - 208,843,142RGD
Cytogenetic Map1q42.3UniSTS
HuRef1206,051,356 - 206,051,518UniSTS
GeneMap99-GB4 RH Map1744.13UniSTS
RH70688  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371235,612,124 - 235,612,246UniSTSGRCh37
Build 361233,678,747 - 233,678,869RGDNCBI36
Celera1208,855,368 - 208,855,490RGD
Cytogenetic Map1q42.3UniSTS
HuRef1206,063,771 - 206,063,893UniSTS
GeneMap99-GB4 RH Map1740.49UniSTS
NCBI RH Map12023.7UniSTS




alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 38 62 42 48 42 622 42 742 666 62 32 52 6


1 to 21 of 21 rows
RefSeq Transcripts NG_009230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001079515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC206484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL357556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF064027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT007086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB110473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA418943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA981183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FO393422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U61232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 21 of 21 rows

Ensembl Acc Id: ENST00000366601   ⟹   ENSP00000355560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,944 (+)Ensembl
Ensembl Acc Id: ENST00000406207   ⟹   ENSP00000384571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,413 - 235,449,078 (+)Ensembl
Ensembl Acc Id: ENST00000461651
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,418,468 - 235,433,066 (+)Ensembl
Ensembl Acc Id: ENST00000465463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,440,822 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000472011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,450 - 235,448,932 (+)Ensembl
Ensembl Acc Id: ENST00000482230
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,414,487 - 235,434,280 (+)Ensembl
Ensembl Acc Id: ENST00000543662   ⟹   ENSP00000439170
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,899 (+)Ensembl
Ensembl Acc Id: ENST00000642339   ⟹   ENSP00000495425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,380,019 - 235,448,968 (+)Ensembl
Ensembl Acc Id: ENST00000642372   ⟹   ENSP00000495295
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,380,054 - 235,436,559 (+)Ensembl
Ensembl Acc Id: ENST00000642431   ⟹   ENSP00000494990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,342,252 - 235,448,929 (+)Ensembl
Ensembl Acc Id: ENST00000642463   ⟹   ENSP00000495007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,413 - 235,448,899 (+)Ensembl
Ensembl Acc Id: ENST00000642503   ⟹   ENSP00000494334
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,736 - 235,448,741 (+)Ensembl
Ensembl Acc Id: ENST00000642610   ⟹   ENSP00000494796
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,427 - 235,452,443 (+)Ensembl
Ensembl Acc Id: ENST00000642764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,433,351 - 235,448,924 (+)Ensembl
Ensembl Acc Id: ENST00000642926
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,420 - 235,416,073 (+)Ensembl
Ensembl Acc Id: ENST00000642981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,434,155 - 235,436,579 (+)Ensembl
Ensembl Acc Id: ENST00000643125   ⟹   ENSP00000494102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,391 - 235,448,926 (+)Ensembl
Ensembl Acc Id: ENST00000643142   ⟹   ENSP00000494755
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,940 (+)Ensembl
Ensembl Acc Id: ENST00000643238   ⟹   ENSP00000495916
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,455 - 235,442,973 (+)Ensembl
Ensembl Acc Id: ENST00000643410   ⟹   ENSP00000495030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,573 - 235,448,944 (+)Ensembl
Ensembl Acc Id: ENST00000643418   ⟹   ENSP00000495711
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,570 - 235,435,840 (+)Ensembl
Ensembl Acc Id: ENST00000643487
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,429,458 - 235,448,949 (+)Ensembl
Ensembl Acc Id: ENST00000643524   ⟹   ENSP00000494026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,944 (+)Ensembl
Ensembl Acc Id: ENST00000643615   ⟹   ENSP00000496103
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,918 (+)Ensembl
Ensembl Acc Id: ENST00000643758   ⟹   ENSP00000496048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,959 - 235,401,587 (+)Ensembl
Ensembl Acc Id: ENST00000643993
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,493 - 235,448,727 (+)Ensembl
Ensembl Acc Id: ENST00000643994   ⟹   ENSP00000496322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,426 - 235,448,963 (+)Ensembl
Ensembl Acc Id: ENST00000644037   ⟹   ENSP00000496408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000644055   ⟹   ENSP00000496307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,570 - 235,448,952 (+)Ensembl
Ensembl Acc Id: ENST00000644126
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,429,111 - 235,448,746 (+)Ensembl
Ensembl Acc Id: ENST00000644217   ⟹   ENSP00000494646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,380,047 - 235,448,881 (+)Ensembl
Ensembl Acc Id: ENST00000644265   ⟹   ENSP00000496033
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,401,519 - 235,441,823 (+)Ensembl
Ensembl Acc Id: ENST00000644578   ⟹   ENSP00000495953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,422 - 235,448,962 (+)Ensembl
Ensembl Acc Id: ENST00000644604   ⟹   ENSP00000495961
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,362,954 - 235,448,932 (+)Ensembl
Ensembl Acc Id: ENST00000644625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,416,142 (+)Ensembl
Ensembl Acc Id: ENST00000644680   ⟹   ENSP00000496173
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,773 - 235,448,756 (+)Ensembl
Ensembl Acc Id: ENST00000644838   ⟹   ENSP00000495910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,934 (+)Ensembl
Ensembl Acc Id: ENST00000644910   ⟹   ENSP00000495738
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,414,561 - 235,448,924 (+)Ensembl
Ensembl Acc Id: ENST00000645069   ⟹   ENSP00000496644
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,767 - 235,430,795 (+)Ensembl
Ensembl Acc Id: ENST00000645205   ⟹   ENSP00000495823
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,573 - 235,448,944 (+)Ensembl
Ensembl Acc Id: ENST00000645351   ⟹   ENSP00000494319
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,573 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000645372   ⟹   ENSP00000496612
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,424 - 235,434,233 (+)Ensembl
Ensembl Acc Id: ENST00000645551   ⟹   ENSP00000495928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,431 - 235,448,782 (+)Ensembl
Ensembl Acc Id: ENST00000645578   ⟹   ENSP00000496495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,330,467 - 235,448,940 (+)Ensembl
Ensembl Acc Id: ENST00000645582   ⟹   ENSP00000494980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,426 - 235,448,966 (+)Ensembl
Ensembl Acc Id: ENST00000645655   ⟹   ENSP00000495202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,570 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000645662   ⟹   ENSP00000495964
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,486 - 235,438,909 (+)Ensembl
Ensembl Acc Id: ENST00000645836   ⟹   ENSP00000493915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,575 - 235,448,924 (+)Ensembl
Ensembl Acc Id: ENST00000645899   ⟹   ENSP00000496773
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,416 - 235,448,617 (+)Ensembl
Ensembl Acc Id: ENST00000645964   ⟹   ENSP00000494208
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,495 - 235,448,919 (+)Ensembl
Ensembl Acc Id: ENST00000646104   ⟹   ENSP00000495475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,470 - 235,448,929 (+)Ensembl
Ensembl Acc Id: ENST00000646186   ⟹   ENSP00000493806
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,924 (+)Ensembl
Ensembl Acc Id: ENST00000646281   ⟹   ENSP00000495225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,736 - 235,437,468 (+)Ensembl
Ensembl Acc Id: ENST00000646286   ⟹   ENSP00000494291
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,932 (+)Ensembl
Ensembl Acc Id: ENST00000646384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,415,990 (+)Ensembl
Ensembl Acc Id: ENST00000646463   ⟹   ENSP00000494541
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000646495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,423,628 - 235,433,085 (+)Ensembl
Ensembl Acc Id: ENST00000646528   ⟹   ENSP00000496553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,571 - 235,448,924 (+)Ensembl
Ensembl Acc Id: ENST00000646536   ⟹   ENSP00000494801
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,944 (+)Ensembl
Ensembl Acc Id: ENST00000646624   ⟹   ENSP00000494575
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,571 - 235,448,934 (+)Ensembl
Ensembl Acc Id: ENST00000646661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,441,764 - 235,448,856 (+)Ensembl
Ensembl Acc Id: ENST00000646821   ⟹   ENSP00000495257
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,449 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000646842
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,419,432 - 235,441,875 (+)Ensembl
Ensembl Acc Id: ENST00000646848   ⟹   ENSP00000495831
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,448,791 (+)Ensembl
Ensembl Acc Id: ENST00000646929   ⟹   ENSP00000493539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,380,073 - 235,430,804 (+)Ensembl
Ensembl Acc Id: ENST00000647151   ⟹   ENSP00000495125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,441,870 - 235,448,963 (+)Ensembl
Ensembl Acc Id: ENST00000647186   ⟹   ENSP00000494775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,571 - 235,448,929 (+)Ensembl
Ensembl Acc Id: ENST00000647233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,420 - 235,448,952 (+)Ensembl
Ensembl Acc Id: ENST00000647322   ⟹   ENSP00000493737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,419,511 - 235,448,918 (+)Ensembl
Ensembl Acc Id: ENST00000647332   ⟹   ENSP00000495024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,437,387 (+)Ensembl
Ensembl Acc Id: ENST00000647338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,419,079 - 235,427,174 (+)Ensembl
Ensembl Acc Id: ENST00000647407   ⟹   ENSP00000495319
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,426 - 235,430,780 (+)Ensembl
Ensembl Acc Id: ENST00000647418   ⟹   ENSP00000493552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,423 - 235,448,951 (+)Ensembl
Ensembl Acc Id: ENST00000647428   ⟹   ENSP00000495630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,328,570 - 235,448,880 (+)Ensembl
Ensembl Acc Id: ENST00000647489   ⟹   ENSP00000494232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,430 - 235,427,147 (+)Ensembl
Ensembl Acc Id: ENST00000651186   ⟹   ENSP00000498645
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1235,367,360 - 235,448,966 (+)Ensembl
RefSeq Acc Id: NM_001079515   ⟹   NP_001072983
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,367,427 - 235,452,443 (+)NCBI
GRCh371235,530,728 - 235,612,280 (+)ENTREZGENE
GRCh371235,530,728 - 235,612,280 (+)NCBI
Build 361233,597,351 - 233,678,903 (+)NCBI Archive
HuRef1205,979,670 - 206,063,930 (+)NCBI
CHM1_11236,802,991 - 236,884,880 (+)NCBI
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287801   ⟹   NP_001274730
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,367,427 - 235,452,443 (+)NCBI
HuRef1205,979,670 - 206,063,930 (+)NCBI
CHM1_11236,802,991 - 236,884,880 (+)NCBI
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287802   ⟹   NP_001274731
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,367,427 - 235,452,443 (+)NCBI
HuRef1205,979,670 - 206,063,930 (+)NCBI
CHM1_11236,802,991 - 236,884,880 (+)NCBI
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBI
Sequence:
RefSeq Acc Id: NM_003193   ⟹   NP_003184
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,367,427 - 235,452,443 (+)NCBI
GRCh371235,530,728 - 235,612,280 (+)ENTREZGENE
GRCh371235,530,728 - 235,612,280 (+)NCBI
Build 361233,597,351 - 233,678,903 (+)NCBI Archive
HuRef1205,979,670 - 206,063,930 (+)NCBI
CHM1_11236,802,991 - 236,884,880 (+)NCBI
T2T-CHM13v2.01234,759,155 - 234,848,336 (+)NCBI
Sequence:
1 to 5 of 63 rows
1 to 5 of 63 rows
RefSeq Acc Id: NP_001072983   ⟸   NM_001079515
- Peptide Label: isoform a
- UniProtKB: A8K8C2 (UniProtKB/Swiss-Prot),   B7Z3P1 (UniProtKB/Swiss-Prot),   Q15813 (UniProtKB/Swiss-Prot),   A0A2R8Y5Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_003184   ⟸   NM_003193
- Peptide Label: isoform a
- UniProtKB: A8K8C2 (UniProtKB/Swiss-Prot),   B7Z3P1 (UniProtKB/Swiss-Prot),   Q15813 (UniProtKB/Swiss-Prot),   A0A2R8Y5Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274730   ⟸   NM_001287801
- Peptide Label: isoform b
- UniProtKB: A0A2R8Y5Q8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274731   ⟸   NM_001287802
- Peptide Label: isoform c
- UniProtKB: A0A2R8Y6Q1 (UniProtKB/TrEMBL),   A0A2R8Y7E7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000439170   ⟸   ENST00000543662
CAP-Gly   LRRCT   Ubiquitin-like

Name Modeler Protein Id AA Range Protein Structure
AF-Q15813-F1-model_v2 AlphaFold Q15813 1-527 view protein structure

RGD ID:6786973
Promoter ID:HG_KWN:7924
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001079515,   OTTHUMT00000096458,   OTTHUMT00000097365,   UC001HXB.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361233,597,144 - 233,597,644 (+)MPROMDB
RGD ID:6859338
Promoter ID:EPDNEW_H2834
Type:initiation region
Name:TBCE_1
Description:tubulin folding cofactor E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2835  EPDNEW_H2836  EPDNEW_H2837  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,367,430 - 235,367,490EPDNEW
RGD ID:6859340
Promoter ID:EPDNEW_H2835
Type:single initiation site
Name:TBCE_2
Description:tubulin folding cofactor E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2834  EPDNEW_H2836  EPDNEW_H2837  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,433,168 - 235,433,228EPDNEW
RGD ID:6859342
Promoter ID:EPDNEW_H2836
Type:initiation region
Name:TBCE_3
Description:tubulin folding cofactor E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2834  EPDNEW_H2835  EPDNEW_H2837  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,438,767 - 235,438,827EPDNEW
RGD ID:6859344
Promoter ID:EPDNEW_H2837
Type:multiple initiation site
Name:TBCE_4
Description:tubulin folding cofactor E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2834  EPDNEW_H2835  EPDNEW_H2836  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381235,448,676 - 235,448,736EPDNEW


1 to 40 of 71 rows
Database
Acc Id
Source(s)
COSMIC TBCE COSMIC
Ensembl Genes ENSG00000284770 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000285053 Ensembl
Ensembl Transcript ENST00000406207 ENTREZGENE
  ENST00000406207.5 UniProtKB/Swiss-Prot
  ENST00000543662 ENTREZGENE
  ENST00000543662.4 UniProtKB/Swiss-Prot
  ENST00000642610 ENTREZGENE
  ENST00000642610.2 UniProtKB/Swiss-Prot
  ENST00000651186 ENTREZGENE
Gene3D-CATH 2.30.30.190 UniProtKB/Swiss-Prot
  3.80.10.10 UniProtKB/Swiss-Prot
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot
GTEx ENSG00000284770 GTEx
  ENSG00000285053 GTEx
HGNC ID HGNC:11582 ENTREZGENE
Human Proteome Map TBCE Human Proteome Map
InterPro CAP-Gly_dom_sf UniProtKB/Swiss-Prot
  CAP-Gly_domain UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot
  Ubiquitin_dom UniProtKB/Swiss-Prot
  Ubl_TBCE UniProtKB/Swiss-Prot
KEGG Report hsa:6905 UniProtKB/Swiss-Prot
NCBI Gene 6905 ENTREZGENE
OMIM 604934 OMIM
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 410-RELATED UniProtKB/Swiss-Prot
  LEUCINE RICH REPEAT PROTEIN UniProtKB/Swiss-Prot
Pfam CAP_GLY UniProtKB/Swiss-Prot
  Ubiquitin_2 UniProtKB/Swiss-Prot
PharmGKB PA36346 PharmGKB
PROSITE CAP_GLY_1 UniProtKB/Swiss-Prot
  CAP_GLY_2 UniProtKB/Swiss-Prot
SMART CAP_GLY UniProtKB/Swiss-Prot
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot
  SSF54236 UniProtKB/Swiss-Prot
  SSF74924 UniProtKB/Swiss-Prot
UniProt A0A2R8Y3S1_HUMAN UniProtKB/TrEMBL
  A0A2R8Y4E7_HUMAN UniProtKB/TrEMBL
  A0A2R8Y4N4_HUMAN UniProtKB/TrEMBL
1 to 40 of 71 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 TBCE  tubulin folding cofactor E  KCS  Kenny-Caffey syndrome  Data merged from RGD:1344387 737654 PROVISIONAL
2016-03-22 TBCE  tubulin folding cofactor E  HRD  hypoparathyroidism, growth and mental retardation, and dysmorphism  Data merged from RGD:1346832 737654 PROVISIONAL