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Gene: TBCE (tubulin folding cofactor E) Sus scrofa

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Symbol:

TBCE

Name:

tubulin folding cofactor E

RGD ID:

13989656

Description:

INVOLVED IN adult locomotory behavior (ortholog); axonogenesis (ortholog); developmental growth (ortholog); ASSOCIATED WITH bacterial infectious disease (ortholog); Chediak-Higashi syndrome (ortholog); common variable immunodeficiency 14 (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tubulin-specific chaperone E

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	55,816,668 - 55,901,171 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	55,816,663 - 55,901,215 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	59,954,790 - 59,986,383 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

bacterial infectious disease (ISO)

Chediak-Higashi syndrome (ISO)

common variable immunodeficiency 14 (ISO)

congenital muscular dystrophy-dystroglycanopathy type A11 (ISO)

Craniofacial Abnormalities (ISO)

disorder of sexual development (ISO)

Dwarfism (ISO)

Facies (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

hypoparathyroidism (ISO)

hypoparathyroidism-retardation-dysmorphism syndrome (ISO)

Kenny-Caffey syndrome type 1 (ISO)

Kenny-Caffey syndrome type 2 (ISO)

microcephaly (ISO)

osteosclerosis (ISO)

parathyroid carcinoma (ISO)

Pituitary Stalk Interruption Syndrome (ISO)

Progressive Encephalopathy with Amyotrophy and Optic Atrophy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult locomotory behavior (IEA,ISO)

axonogenesis (IEA,ISO)

developmental growth (IEA,ISO)

microtubule cytoskeleton organization (IBA,IEA,ISO)

mitotic spindle organization (IEA)

muscle atrophy (IEA,ISO)

peripheral nervous system neuron axonogenesis (IEA,ISO)

post-chaperonin tubulin folding pathway (IBA,IEA)

post-embryonic development (IEA,ISO)

tubulin complex assembly (IBA)

Cellular Component

cytoplasm (IBA,IEA)

Molecular Function

alpha-tubulin binding (IBA)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

TBCE
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	55,816,668 - 55,901,171 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	55,816,663 - 55,901,215 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	59,954,790 - 59,986,383 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TBCE
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	235,367,427 - 235,452,443 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	235,367,360 - 235,452,443 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	235,530,742 - 235,615,756 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	233,597,351 - 233,678,903 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	231,856,811 - 231,938,321	NCBI
Celera	1	208,773,486 - 208,855,524 (+)	NCBI		Celera
Cytogenetic Map	1	q42.3	NCBI
HuRef	1	205,979,723 - 206,063,927 (+)	NCBI		HuRef
CHM1_1	1	236,803,044 - 236,884,877 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	234,759,155 - 234,848,336 (+)	NCBI		T2T-CHM13v2.0

Tbce
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	14,172,532 - 14,214,235 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	14,172,534 - 14,214,223 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	13,997,947 - 14,039,650 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	13,997,949 - 14,039,638 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	14,090,218 - 14,131,867 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	13,790,077 - 13,831,726 (-)	NCBI		MGSCv36	mm8
Celera	13	14,305,650 - 14,346,667 (-)	NCBI		Celera
Cytogenetic Map	13	A1	NCBI
cM Map	13	5.29	NCBI

Tbce
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	55,983,627 - 56,031,578 (+)	NCBI		GRCr8
mRatBN7.2	17	51,290,143 - 51,336,090 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	51,290,202 - 51,336,089 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	54,459,035 - 54,504,526 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	58,461,975 - 58,507,461 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	52,593,177 - 52,638,508 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	53,983,126 - 54,029,028 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	53,983,182 - 54,029,027 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	51,676,746 - 51,723,130 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	59,485,451 - 59,533,041 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	59,496,283 - 59,543,873 (+)	NCBI
Celera	17	47,297,977 - 47,343,424 (+)	NCBI		Celera
Cytogenetic Map	17	q12.1	NCBI

Tbce
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	4,502,897 - 4,558,697 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955492	4,502,705 - 4,573,126 (-)	NCBI	ChiLan1.0	ChiLan1.0

TBCE
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	13,729,178 - 13,856,775 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	13,941,276 - 14,044,027 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	210,881,078 - 211,008,686 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	215,929,658 - 216,020,613 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	215,929,658 - 216,020,613 (+)	Ensembl	panpan1.1		panPan2

TBCE
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	4,490,892 - 4,569,401 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	4,490,994 - 4,569,357 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	4,473,098 - 4,551,614 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	4,512,625 - 4,591,187 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	4,512,629 - 4,591,155 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	4,523,866 - 4,602,326 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	4,641,317 - 4,719,844 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	4,862,950 - 4,941,668 (-)	NCBI		UU_Cfam_GSD_1.0

Tbce
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	40,882,963 - 40,931,750 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	17,046,284 - 17,095,744 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	17,048,187 - 17,097,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TBCE
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	72,544,942 - 72,616,716 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	72,545,012 - 72,612,622 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	74,568,863 - 74,652,576 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tbce
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	15,067,044 - 15,133,008 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	15,067,044 - 15,132,690 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in TBCE
1947 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021074395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021074397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002338967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01092065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000057828 ⟹ ENSSSCP00000042305

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,820,406 - 55,901,171 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000072736 ⟹ ENSSSCP00000062388

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,817,128 - 55,901,159 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000072878 ⟹ ENSSSCP00000064539

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,816,669 - 55,901,171 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000073096 ⟹ ENSSSCP00000070407

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,816,668 - 55,901,126 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000076980 ⟹ ENSSSCP00000067735

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,816,669 - 55,901,149 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000078997 ⟹ ENSSSCP00000069621

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,816,669 - 55,901,171 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000080822 ⟹ ENSSSCP00000071362

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,816,669 - 55,901,171 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000095083 ⟹ ENSSSCP00000079376

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	14	55,820,406 - 55,880,961 (-)	Ensembl

RefSeq Acc Id:

XM_021074395 ⟹ XP_020930054

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,667 - 55,901,215 (-)	NCBI

Sequence:

show sequence

GGCGGGACTTCCCGTTTCCCTGAAGAAGCACTTCCGGCCAGAGCCGGAAGCTGTCTGGGGCCGG
ACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCAGCTGCGGGCAGATCTCCTCATATTTTG
GATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAG
TTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTT
AGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTAT
TTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAG
ACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGA
GCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAA
CAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTG
ACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTT
GTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTC
AGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGA
AGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTG
GCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGAC
GTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGT
TTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCT
ACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTG
CTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGC
ACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCG
TCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGGTGAGTGCTGGT
GTGGCGAGGCGTTTCCTAAATTGGAAACCAAGTGATTGCTGTAAAAAGCAGTTACGGTTGAAGA
CGGAAAAGTGCATCGGAGTTGTTTTCCTCCAAATGATTCAGCCTGAGGAACGGCGCGGGGCTGA
GCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTGGACATCAGGATCCAGAC
AAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCAGTCACTTTGCCTCAAAT
ATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCAGAAACGAGCTACT
AACACTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGAGAAACAACTGCCAGAAT
CCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTGTGTCAGAACT
TCTCTTGTCCTATGAAAGTCCCAAAGTAAGTTGACCAGCAAAACACAAAGTTGACCTGAGTTCC
CCATGGAGCTAAGTCTATGTAACACGCTCGATTCTCAACAGAGACCACACGTCTTTGTTTGGCA
GGGAGGAGTGGGCATATGTGTTTGTCAGATGTTTTCATCACTCCCACCCCTTTGTTCTAATTTT
AGATGCCGGGCAGAGAGATTGAACTAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAGA
AAATGGAGACTGTCTATTAGTGCGATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAAT
TCATTTATCATGACTGGACGTAAATGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCAC
CACTTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATAT
AATAGCAATAATAAAAGCTTTGCATCTA

hide sequence

RefSeq Acc Id:

XM_021074397 ⟹ XP_020930056

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,666 - 55,901,215 (-)	NCBI

Sequence:

show sequence

GGCGGGACTTCCCGTTTCCCTGAAGAAGCACTTCCGGCCAGAGCCGGAAGCTGTCTGGGGCCGG
ACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCAGCTGCGGGCAGATCTCCTCATATTTTG
GATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAG
TTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTT
AGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTAT
TTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAG
ACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGA
GCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAA
CAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTG
ACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTT
GTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTC
AGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGA
AGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTG
GCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGAC
GTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGT
TTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCT
ACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTG
CTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGC
ACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCG
TCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGATTCAGCCTGAG
GAACGGCGCGGGGCTGAGCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTG
GACATCAGGATCCAGACAAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCA
GTCACTTTGCCTCAAATATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTG
CTCAGAAACGAGCTACTAACTCTGTTTATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAG
AGAAACAACTGCCAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAA
AGTGTCTGTGTCAGAACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAA
CTAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGC
GATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAA
ATGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAG
CTGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGC
ATCTAC

hide sequence

RefSeq Acc Id:

XR_002338962

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,215 (-)	NCBI

Sequence:

show sequence

GGCGGGACTTCCCGTTTCCCTGAAGAAGCACTTCCGGCCAGAGCCGGAAGCTGTCTGGGGCCGG
ACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCAGCTGCGGGCAGATCTCCTCATATTTTG
GATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAG
TTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTT
AGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTAT
TTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAG
ACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGA
GCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAA
CAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTG
ACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTT
GTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTC
AGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGA
AGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTG
GCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGAC
GTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGT
TTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCT
ACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTG
CTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGC
ACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCG
TCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGATTCAGCCTGAG
GAACGGCGCGGGGCTGAGCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTG
GACATCAGGATCCAGACAAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCA
GTCACTTTGCCTCAGTTCGTATACTTGTGCCCGTGCCCTGGCCTGCAGGGCTTTCCTCTGGGGC
AGTTTCCCTTGGGTGTCAAAGGAGACCCTCAGTGTTGTTGCTTTTCTGCTTTGGGGATTTTTAT
GCTCATCTAAGTGGACAGCCGGGGCACCTGTGGCCCCCTGGAAGCAGATCATTAATCTCTCAGC
AGAAGGAAGCTGGGAAGTCTGGGGCTTTCTGGAAGGGAGAGCCTGGTATTTGAGGAGGGGAAAG
CTGCTCTTAAAATGGCAGTTCTCATCTTGGTGCAAACTCACCAGACTCTCGTTCTCAGGAGGTG
TGGGGCACCATTCCCACTTTAGGAAGAGCAGGAAGTGCCCCACTTCATCCCAACCCTGGCTGTG
CCCGCGCGAGTTTTTAAATGAAGGGCTTTTATTTATTGATTGTCTTTTTGCCTTTTCTAGGGCC
ACTCCTGGGGCATATGGAGGTTCCCAGGCTAGGGGTCTAATCGGAGCTATAGCCACCACGGGCT
ACGGCAGAGCAACAGCAACGCAGGATCCAAGCTGCGTCTTCGACCTACACCACAGCTCACAGCA
ACGCTGGATCCTTAACCCACTGAGCAAGGCCAGGAATCGAACCCACAATCTCATGGTTCCTAGT
CGGATTCATTAACCACTGAGCCACGACGGGAACTCCTAAATGAAGGGCTTTTAAAGTGTAACCC
AGGCCTTGGCATTCTTCATGCTCCTCGGGTAATTTTACCATTCCTGGAAGTTGAGTGCAATTTC
TCCTGAGTGCTCTGTTCTGAGGGCTCCCCAGGCCTGGCTCCTTGGCCCTGAAGCTCCACCTTCA
GGACCCTTTGTTTTGACTTCCATTTTGTTTTGACTTATTATTCCAAATTTCACTTCTATGTGAT
TTTCTTTTTTATGTATTTCCTAATGTGAGCAGCTTACTGCATAAATGCTTCAGGCTGGAGCATT
ATCTTTGAGGGAGAAAAGTTGCCTGTGGGAATTGCTTTCAAATTATTCCATTAGCTGGCCCAAT
TTCCTGGCCACTTTACATGAATTCTGAATCACTTGGGGGTTGGGGTAGGGGTGGGGGGAGGTTC
CCGAAGGTCTGGCTCAATATCTCCCCGCTAAGAAGGTAGAAGACAAAGCCGACACTTGGGGGGA
ATTTAGACATTGTGTCCCAGGGGCCCAGCAGGAGTCAGAGCAAAGGGGCTGCTTTCCTCATGCC
TCCCATAGAGGCTGCTTTTCCTGGCAGCACCCAGACCACCACTGGCCAAGTGACTAAAAGCTGG
TGAAGGTGCCTGAGTCATGTTTCTCTCAGGACCCAGAAAGGGGGAACTGTTACCAAAAGGCGAG
ACTGATTCAGCATTTTAAGATTTGAGAAGAGAGCCTGTTTGTCAGGATGCCGTCTCTGAGGATC
AGTGGTCACAGATGACAGGGGGATTCTGGGCTTAGAAGCGGCTACTGTCCATTCCTGCAGGAAT
ACACTAGACAAGTAACTGAATTAAATGAAGCAGGGCCAGGTTAGCGCCCGGCTGCTGCTGGCTT
CATCCTGGGAAGGGAAAAGGCTATGTGGATACTTAACTCACCTTTCTCCCTGACAGTGGCCTTT
TGGGCTATCATTCATCTTTTTGTATTTCTTCTTCAACAGAATATGGTGCACCTGAAGATGGGGA
ACTCAAAACACCACAACCATTTTTGCTCAGAAACGAGCTACTAACACTGAGATAAAATATCCTA
ATCAACTTGGTCAGAGAGTCATAGAGAAACAACTGCCAGAATCCATGACAGTTCAAAAGGTGAA
AGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTGTGTCAGAACTTCTCTTGTCCTATGAAAGTCCC
AAAATGCCGGGCAGAGAGATTGAACTAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAG
AAAATGGAGACTGTCTATTAGTGCGATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAA
TTCATTTATCATGACTGGACGTAAATGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCA
CCACTTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATA
TAATAGCAATAATAAAAGCTTTGCATCTACTAA

hide sequence

RefSeq Acc Id:

XR_002338963

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,215 (-)	NCBI

Sequence:

show sequence

GGCGGGACTTCCCGTTTCCCTGAAGAAGCACTTCCGGCCAGAGCCGGAAGCTGTCTGGGGCCGG
ACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCAGCTGCGGGCAGATCTCCTCATATTTTG
GATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAG
TTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTT
AGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTAT
TTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAG
ACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGA
GCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAA
CAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTG
ACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTT
GTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTC
AGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGA
AGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTG
GCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGAC
GTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGT
TTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCT
ACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTG
CTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGC
ACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCG
TCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGGTGAGTGCTGGT
GTGGCGAGGCGTTTCCTAAATTGGAAACCAAGTGATTGCTGTAAAAAGCAGTTACGGTTGAAGA
CGGAAAAGTGCATCGGAGTTGTTTTCCTCCAAATGATTCAGCCTGAGGAACGGCGCGGGGCTGA
GCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTGGACATCAGGATCCAGAC
AAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCAGTCACTTTGCCTCAAAT
ATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCAGAAACGAGCTACT
AACACTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGAGAAACAACTGCCAGAAT
CCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTGTGTCAGAACT
TCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAACTAGAAAATGATCAGCAG
TCATTACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGCGATGGTAGCAGCCAACTA
AGAAAATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAAATGACTTCTTGGGACAGT
TATGTCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGG
CAAAGACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGCATCTACTAA

hide sequence

RefSeq Acc Id:

XR_002338964

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,181 (-)	NCBI

Sequence:

show sequence

CGGCCAGAGCCGGAAGCTGTCTGGGGCCGGACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGG
CCAGCTGCGGGCAGTTTTAGGTGTTGTACTTTAAGAAAAGAAACAATAAGTGAATTATGGAGAA
GACCTTGGAATTCACATGAGGATGATTTAAGGAGCTGGGATGTTTACCATGGTAAAGAGTTTAA
GAGGTGGCAACAGGAAGAGGAGAGAGGAGAAATAATGATGACATATCTCCTCATATTTTGGATT
CTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAGTTAA
TGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTTAGGA
GTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTATTTTA
AATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAGACTT
TCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGAGCAA
ACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAACAAA
GTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTGACAA
ACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTTGTCA
TCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTCAGTG
AAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGAAGGT
TTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTGGCCA
GTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGACGTTC
TACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGTTTCT
AATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCTACAT
TTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTGCTCA
ATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGCACGC
TCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCGTCAG
TTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGGTGAGTGCTGGTGTGG
CGAGGCGTTTCCTAAATTGGAAACCAAGTGATTGCTGTAAAAAGCAGTTACGGTTGAAGACGGA
AAAGTGCATCGGAGTTGTTTTCCTCCAAATGATTCAGCCTGAGGAACGGCGCGGGGCTGAGCTT
GACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTGGACATCAGGATCCAGACAAAG
ACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCAGTCACTTTGCCTCAAATATGG
TGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCAGAAACGAGCTACTAACA
CTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGAGAAACAACTGCCAGAATCCAT
GACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTGTGTCAGAACTTCTC
TTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAACTAGAAAATGATCAGCAGTCAT
TACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGCGATGGTAGCAGCCAACTAAGAA
AATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAAATGACTTCTTGGGACAGTTATG
TCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAGCTGTTATTTTTCATAGGGCAAA
GACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGCATCTACTAA

hide sequence

RefSeq Acc Id:

XR_002338965

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,181 (-)	NCBI

Sequence:

show sequence

CGGCCAGAGCCGGAAGCTGTCTGGGGCCGGACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGG
CCAGCTGCGGGCAGTTTTAGGTGTTGTACTTTAAGAAAAGAAACAATAAGTGAATTATGGAGAA
GACCTTGGAATTCACATGAGGATGATTTAAGGAGCTGGGATGTTTACCATGATCTCCTCATATT
TTGGATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTG
AAGTTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTG
GTTAGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTG
TATTTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAG
TAGACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAA
AGAGCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAA
CAACAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTG
GTGACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCT
GTTGTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAAT
CTCAGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGC
TGAAGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGG
GTGGCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCT
GACGTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGC
TGTTTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTC
TCTACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTT
GTGCTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTC
TGCACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCAC
TCGTCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGGTGAGTGCT
GGTGTGGCGAGGCGTTTCCTAAATTGGAAACCAAGTGATTGCTGTAAAAAGCAGTTACGGTTGA
AGACGGAAAAGTGCATCGGAGTTGTTTTCCTCCAAATGATTCAGCCTGAGGAACGGCGCGGGGC
TGAGCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTGGACATCAGGATCCA
GACAAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCAGTCACTTTGCCTCA
AATATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCAGAAACGAGCT
ACTAACACTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGAGAAACAACTGCCAG
AATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTGTGTCAGA
ACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAACTAGAAAATGATCAG
CAGTCATTACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGCGATGGTAGCAGCCAA
CTAAGAAAATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAAATGACTTCTTGGGAC
AGTTATGTCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAGCTGTTATTTTTCATA
GGGCAAAGACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGCATCTACTAA

hide sequence

RefSeq Acc Id:

XR_002338966

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,215 (-)	NCBI

Sequence:

show sequence

GGCGGGACTTCCCGTTTCCCTGAAGAAGCACTTCCGGCCAGAGCCGGAAGCTGTCTGGGGCCGG
ACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCAGCTGCGGGCAGATCTCCTCATATTTTG
GATTCTGGCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAG
TTAATGGAGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTT
AGGAGTAGAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTAT
TTTAAATGCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAG
ACTTTCTCACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGA
GCAAACTGTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAA
CAAAGTCAGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTG
ACAAACGAGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTT
GTCATCATGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTC
AGTGAAAATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGA
AGGTTTTAGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTG
GCCAGTCCTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGAC
GTTCTACAGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGT
TTCTAATAGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCT
ACATTTTCCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTG
CTCAATGACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGC
ACGCTCTGTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCG
TCAGTTCATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGATTCAGCCTGAG
GAACGGCGCGGGGCTGAGCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTG
GACATCAGGATCCAGACAAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCA
GTCACTTTGCCTCAAATATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTG
CTCAGAAACGAGCTACTAACACTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGA
GAAACAACTGCCAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAA
GTGTCTGTGTCAGAACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAAC
TAGAAAATGATCAGCAGTCATTACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGCG
ATGGTAGCAGCCAACTAAGAAAATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAAA
TGACTTCTTGGGACAGTTATGTCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAGC
TGTTATTTTTCATAGGGCAAAGACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGCA
TCTACTAA

hide sequence

RefSeq Acc Id:

XR_002338967

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	14	55,816,663 - 55,901,178 (-)	NCBI

Sequence:

show sequence

CCAGAGCCGGAAGCTGTCTGGGGCCGGACGCGTGAGAGGGGCAGTAGCTCGGACGCTCTGGCCA
GCTGCGGGCAGTTTTAGGTGTTGTACTTTAAGAAAAGAAACAATAAGTGAATTATGGAGAAGAC
CTTGGAATTCACATGAGGATGATTTAAGGAGCTGGGATGTTTACCATGGTAAAGAGTTTAAGAG
GTGGCAACAGGAAGAGGAGAGAGGAGAAATAATGATGACATATCTCCTCATATTTTGGATTCTG
GCTATGTTATAATGAATGACACTTTGACATCAGATGTCACTGGTCGGAGAGTTGAAGTTAATGG
AGAACATGCAACTGTGCGTTTTTCTGGCATTGTCCCTCCTGTGGCAGGTCTCTGGTTAGGAGTA
GAATGGGACAATCCTGAAAGGGGAAAGCATGATGGAAGCCACGAAGGGACTGTGTATTTTAAAT
GCAGGCATCCAACAGGAGGATCTTTTATTCGTCCAAACAAAGTAAATTTTGGAGTAGACTTTCT
CACTGCAATTAAGAATCGCTATGTGTTAGAAGATGAACCAGAGGAAGAAGAAAAAGAGCAAACT
GTTATAATTGGAAATAAACCTGTAGAAACCATTGGTTTTGACTCTGTTGTAAAACAACAAAGTC
AGTTGAGCAAGCTGCAGGAAGTTTCTCTGAGGAACTGCGCAGTAAACGGTGCTGGTGACAAACG
AGGAATTGCCCAAGCGTGTCCTAATATTAGAAGCATAGATTTGTCAAAAAACCTGTTGTCATCA
TGGGATGATGTCATAGCTATTGCTGATCAGCTCAAACACCTGGAAGTTCTGAATCTCAGTGAAA
ATAAACTAAGATTTCCCTCTGGTCTACCATCTCCAACCGGAACATTTTCTATGCTGAAGGTTTT
AGTGCTTAACCGGACAGGAGTAACATGGGCAGAGGTGCTCCGCTGTGCCTCTGGGTGGCCAGTC
CTTGAGAAACTGTACCTTGAGTCTAACAATATCATCATTTCAGAAAGGCCAGCTGACGTTCTAC
AGACGGTCAAGTTACTAGACCTTTCCTCTAATCAGTTGATTGATGAAAACCAGCTGTTTCTAAT
AGCTTATCTGCCCAGATTAGAACAACTAATCCTTTCTGACATTGGAATTTCCTCTCTACATTTT
CCGGATGCTGGAATTGGGTGCAAAACAGCCATGTTTCCTTCCCTACAGTACCTTGTGCTCAATG
ACAATCAGATATCACAATGGTCCTTTATCAATGAGCTGGATAAGTTACAGAGTCTGCACGCTCT
GTCCTGTGCCAGAAACCCGCTGACTGAAGAAGGCAGCAAAGACGCGCAGACCACTCGTCAGTTC
ATCATCGCCAAGATCGGCCAGCTGCGGACCCTCAACAAGTGTGTGATTCAGCCTGAGGAACGGC
GCGGGGCTGAGCTTGACTACCGAAAAGCATTTGGAAACGAATGGAAAAAGGCCGGTGGACATCA
GGATCCAGACAAAGACAGACCCAACGAGGAATTTCTTGCAGCGCATCCTAGATACCAGTCACTT
TGCCTCAAATATGGTGCACCTGAAGATGGGGAACTCAAAACACCACAACCATTTTTGCTCAGAA
ACGAGCTACTAACACTGAGATAAAATATCCTAATCAACTTGGTCAGAGAGTCATAGAGAAACAA
CTGCCAGAATCCATGACAGTTCAAAAGGTGAAAGGCTTCCTGTCGCGTCTCCTCAAAGTGTCTG
TGTCAGAACTTCTCTTGTCCTATGAAAGTCCCAAAATGCCGGGCAGAGAGATTGAACTAGAAAA
TGATCAGCAGTCATTACAGTTTTATTCTATAGAAAATGGAGACTGTCTATTAGTGCGATGGTAG
CAGCCAACTAAGAAAATCCAGAGATTAGAAAATTCATTTATCATGACTGGACGTAAATGACTTC
TTGGGACAGTTATGTCCAAAAAAAAGGTTTCACCACTTATCCTAAATAGAAAACAGCTGTTATT
TTTCATAGGGCAAAGACCAAGGCTTGTATATATAATAGCAATAATAAAAGCTTTGCATCTACTA
A

hide sequence

Protein Sequences


Protein RefSeqs	XP_020930054	(Get FASTA)	NCBI Sequence Viewer
	XP_020930056	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000042305.1
	ENSSSCP00000062388.2
	ENSSSCP00000064539.1
	ENSSSCP00000067735.2
	ENSSSCP00000069621.1
	ENSSSCP00000070407
	ENSSSCP00000070407.2
	ENSSSCP00000071362
	ENSSSCP00000071362.2
	ENSSSCP00000079376.1
	ENSSSCP00025028868.1
	ENSSSCP00025028977.1
	ENSSSCP00025029096.1
	ENSSSCP00055012562.1
	ENSSSCP00055012589.1
	ENSSSCP00070028348.1
	ENSSSCP00070028354.1
	ENSSSCP00070028358.1

RefSeq Acc Id:	XP_020930056 ⟸ XM_021074397
- Peptide Label:	isoform X2
- UniProtKB:	A0A481BS75 (UniProtKB/TrEMBL), A0A4X1UGN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHP TGGSFIRPNKVNFGVDFLTAIKNRYVLEDEPEEEEKEQTVIIGNKPVETIGFDSVVKQQSQLSK LQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLR FPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQTVK LLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQYLVLNDNQI SQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLNKCVIQPEERRGAE LDYRKAFGNEWKKAGGHQDPDKDRPNEEFLAAHPRYQSLCLKYGAPEDGELKTPQPFLLRNELL TLFIKYPNQLGQRVIEKQLPESMTVQKVKGFLSRLLKVSVSELLLSYESPKMPGREIELENDQQ SLQFYSIENGDCLLVRW hide sequence

RefSeq Acc Id:	XP_020930054 ⟸ XM_021074395
- Peptide Label:	isoform X1
- UniProtKB:	A0A287AE62 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDTLTSDVTGRRVEVNGEHATVRFSGIVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHP TGGSFIRPNKVNFGVDFLTAIKNRYVLEDEPEEEEKEQTVIIGNKPVETIGFDSVVKQQSQLSK LQEVSLRNCAVNGAGDKRGIAQACPNIRSIDLSKNLLSSWDDVIAIADQLKHLEVLNLSENKLR FPSGLPSPTGTFSMLKVLVLNRTGVTWAEVLRCASGWPVLEKLYLESNNIIISERPADVLQTVK LLDLSSNQLIDENQLFLIAYLPRLEQLILSDIGISSLHFPDAGIGCKTAMFPSLQYLVLNDNQI SQWSFINELDKLQSLHALSCARNPLTEEGSKDAQTTRQFIIAKIGQLRTLNKCVVSAGVARRFL NWKPSDCCKKQLRLKTEKCIGVVFLQMIQPEERRGAELDYRKAFGNEWKKAGGHQDPDKDRPNE EFLAAHPRYQSLCLKYGAPEDGELKTPQPFLLRNELLTLR hide sequence

Ensembl Acc Id:

ENSSSCP00000062388 ⟸ ENSSSCT00000072736

Ensembl Acc Id:

ENSSSCP00000064539 ⟸ ENSSSCT00000072878

Ensembl Acc Id:

ENSSSCP00000042305 ⟸ ENSSSCT00000057828

Ensembl Acc Id:

ENSSSCP00000079376 ⟸ ENSSSCT00000095083

Ensembl Acc Id:

ENSSSCP00000067735 ⟸ ENSSSCT00000076980

Ensembl Acc Id:

ENSSSCP00000070407 ⟸ ENSSSCT00000073096

Ensembl Acc Id:

ENSSSCP00000069621 ⟸ ENSSSCT00000078997

Ensembl Acc Id:

ENSSSCP00000071362 ⟸ ENSSSCT00000080822

Protein Domains

CAP-Gly

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000034844	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025049366	UniProtKB/TrEMBL
	ENSSSCG00055008147	UniProtKB/TrEMBL
	ENSSSCG00070017170	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000057828.3	UniProtKB/TrEMBL
	ENSSSCT00000072736.2	UniProtKB/TrEMBL
	ENSSSCT00000072878.2	UniProtKB/TrEMBL
	ENSSSCT00000073096	ENTREZGENE
	ENSSSCT00000073096.2	UniProtKB/TrEMBL
	ENSSSCT00000076980.2	UniProtKB/TrEMBL
	ENSSSCT00000078997.2	UniProtKB/TrEMBL
	ENSSSCT00000080822	ENTREZGENE
	ENSSSCT00000080822.2	UniProtKB/TrEMBL
	ENSSSCT00000095083.1	UniProtKB/TrEMBL
	ENSSSCT00025067432.1	UniProtKB/TrEMBL
	ENSSSCT00025067618.1	UniProtKB/TrEMBL
	ENSSSCT00025067812.1	UniProtKB/TrEMBL
	ENSSSCT00055015982.1	UniProtKB/TrEMBL
	ENSSSCT00055016011.1	UniProtKB/TrEMBL
	ENSSSCT00070033942.1	UniProtKB/TrEMBL
	ENSSSCT00070033952.1	UniProtKB/TrEMBL
	ENSSSCT00070033956.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.190	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
InterPro	CAP-Gly_dom_sf	UniProtKB/TrEMBL
	CAP-Gly_domain	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
	Ubiquitin-like_domsf	UniProtKB/TrEMBL
	Ubl_TBCE	UniProtKB/TrEMBL
NCBI Gene	TBCE	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 410-RELATED	UniProtKB/TrEMBL
	LEUCINE RICH REPEAT PROTEIN	UniProtKB/TrEMBL
Pfam	CAP_GLY	UniProtKB/TrEMBL
	LRR_9	UniProtKB/TrEMBL
PROSITE	CAP_GLY_1	UniProtKB/TrEMBL
	CAP_GLY_2	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
SMART	CAP_GLY	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	Outer arm dynein light chain 1	UniProtKB/TrEMBL
	RNI-like	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
	SSF74924	UniProtKB/TrEMBL
UniProt	A0A287AE62	ENTREZGENE, UniProtKB/TrEMBL
	A0A481BS75	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UEC0_PIG	UniProtKB/TrEMBL
	A0A4X1UGN7	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1UID9_PIG	UniProtKB/TrEMBL
	A0A5G2QE05_PIG	UniProtKB/TrEMBL
	A0A5G2QKM3_PIG	UniProtKB/TrEMBL
	A0A5G2QS31_PIG	UniProtKB/TrEMBL
	A0A5G2R673_PIG	UniProtKB/TrEMBL
	A0A5G2R8G0_PIG	UniProtKB/TrEMBL
	A0A5G2RIF5_PIG	UniProtKB/TrEMBL
	A0A8W4FJI2_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM