GWAS1122306_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1122306_H (blood protein measurement QTL GWAS1122306 (human)) Homo sapiens

Symbol: GWAS1122306_H
Name: blood protein measurement QTL GWAS1122306 (human)
RGD ID: 597026232
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381235,431,636 - 235,431,637RGD_MAPPER_PIPELINEGRCh38
GRCh371235,594,951 - 235,594,952RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122306_HHumanblood protein measurement  IAGPrs10802708405850206 GWAS_CATALOGPMID:30072576

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122306_HHumanblood protein amount  IAGPrs10802708405850206 GWAS_CATALOGPMID:30072576

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1122306_HHumanblood protein measurement  IAGPrs10802708405850206 GWAS_CATALOGPMID:30072576

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1313614TBCEtubulin folding cofactor E1235367427235452443Human


Peak: (rs10802708)
Human AssemblyChrPosition (strand)Source
GRCh381235,431,636 - 235,431,637RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597026232GWAS1122306_Hblood protein measurement QTL GWAS1122306 (human)2e-09blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1235431636235431637Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1122306_H GCST006585 Blood protein levels 3,200 European ancestry individuals C 0.64765625 2E-9 8.699 rs10802708 0.15399054 blood protein measurement (EFO:0007937)
 PMID:30072576
Database
Acc Id
Source(s)
GWAS Catalog GCST006585 GWAS Catalog

Note Type Note Reference