Cip2a (cellular inhibitor of PP2A) - Rat Genome Database

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Gene: Cip2a (cellular inhibitor of PP2A) Rattus norvegicus
Analyze
Symbol: Cip2a
Name: cellular inhibitor of PP2A
RGD ID: 1310335
Description: Predicted to enable protein homodimerization activity and protein phosphatase inhibitor activity. Predicted to be involved in broken chromosome clustering. Predicted to act upstream of or within positive regulation of neuroblast proliferation and spermatogenesis. Predicted to be located in several cellular components, including cytosol; microtubule organizing center; and plasma membrane. Predicted to be active in chromosome. Orthologous to human CIP2A (cellular inhibitor of PP2A); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cell proliferation regulating inhibitor of protein phosphatase 2A; LOC360711; RGD1310335; similar to RIKEN cDNA C330027C09
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,255,123 - 65,285,914 (-)NCBIGRCr8
mRatBN7.21151,792,143 - 51,823,016 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,795,024 - 51,822,938 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01154,373,794 - 54,404,704 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,377,374 - 54,404,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,535,086 - 57,565,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,036,752 - 53,065,176 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11153,094,980 - 53,123,481 (-)NCBI
Celera1151,399,119 - 51,429,954 (-)NCBICelera
Cytogenetic Map11q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 62 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cip2aRat1,1-dichloroethene increases expressionISOCip2a (Mus musculus)6480464vinylidene chloride results in increased expression of CIP2A mRNACTDPMID:26682919
Cip2aRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of CIP2A mRNACTDPMID:30723492
Cip2aRat17beta-estradiol increases expressionISOCIP2A (Homo sapiens)6480464Estradiol results in increased expression of CIP2A mRNACTDPMID:19167446
Cip2aRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of CIP2A mRNACTDPMID:32145629
Cip2aRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCIP2A (Homo sapiens)6480464Tetrachlorodibenzodioxin results in decreased expression of CIP2A mRNACTDPMID:20106945
Cip2aRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of CIP2A mRNACTDPMID:32109520
Cip2aRat2-palmitoylglycerol increases expressionISOCIP2A (Homo sapiens)64804642-palmitoylglycerol results in increased expression of CIP2A mRNACTDPMID:37199045
Cip2aRatacrylamide decreases expressionISOCIP2A (Homo sapiens)6480464Acrylamide results in decreased expression of CIP2A mRNACTDPMID:32763439
Cip2aRatbenzo[a]pyrene increases expressionISOCip2a (Mus musculus)6480464Benzo(a)pyrene results in increased expression of CIP2A mRNACTDPMID:32417428
Cip2aRatbenzo[a]pyrene increases expressionISOCIP2A (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of CIP2A mRNACTDPMID:32234424
Cip2aRatbenzo[a]pyrene diol epoxide I decreases expressionISOCIP2A (Homo sapiens)64804647 more ...CTDPMID:20382639
Cip2aRatbisphenol A decreases expressionEXP 6480464bisphenol A results in decreased expression of CIP2A mRNACTDPMID:25181051 and PMID:34947998
Cip2aRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of CIP2A mRNACTDPMID:32145629
Cip2aRatbisphenol A decreases expressionISOCIP2A (Homo sapiens)6480464bisphenol A results in decreased expression of CIP2A mRNACTDPMID:29275510
Cip2aRatbutanal decreases expressionISOCIP2A (Homo sapiens)6480464butyraldehyde results in decreased expression of CIP2A mRNACTDPMID:26079696
Cip2aRatcadmium dichloride decreases expressionISOCIP2A (Homo sapiens)6480464Cadmium Chloride results in decreased expression of CIP2A proteinCTDPMID:24527689
Cip2aRatcalcitriol multiple interactionsISOCIP2A (Homo sapiens)6480464[Testosterone co-treated with Calcitriol] results in decreased expression of CIP2A mRNACTDPMID:21592394
Cip2aRatcalcitriol decreases expressionISOCIP2A (Homo sapiens)6480464Calcitriol results in decreased expression of CIP2A mRNACTDPMID:21592394
Cip2aRatchloroquine multiple interactionsISOCIP2A (Homo sapiens)6480464Chloroquine inhibits the reaction [temsirolimus results in decreased expression of CIP2A protein]CTDPMID:24493623
Cip2aRatcisplatin decreases expressionISOCIP2A (Homo sapiens)6480464Cisplatin results in decreased expression of CIP2A mRNACTDPMID:27392435

1 to 20 of 62 rows

Biological Process
1 to 10 of 10 rows

  
1 to 10 of 10 rows

Cellular Component
1 to 14 of 14 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cip2aRatcentrosome located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatcentrosome located_inISOCIP2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cip2aRatchromosome is_active_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatchromosome is_active_inISOCIP2A (Homo sapiens)1624291 PMID:35121901 more ...RGDPMID:35121901 more ...
Cip2aRatciliary basal body located_inISOCIP2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cip2aRatciliary basal body located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatcytoplasm located_inISOCIP2A (Homo sapiens)1624291 RGDGO_REF:0000054
Cip2aRatcytoplasm located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatcytosol located_inISOCIP2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cip2aRatcytosol located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatintracellular membrane-bounded organelle located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
Cip2aRatintracellular membrane-bounded organelle located_inISOCIP2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cip2aRatplasma membrane located_inISOCIP2A (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Cip2aRatplasma membrane located_inIEAUniProtKB:Q8TCG1 and ensembl:ENSP000002957461600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 14 of 14 rows

Molecular Function

  


#
Reference Title
Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:20447748   PMID:22461891   PMID:25468996   PMID:28174209  



Cip2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,255,123 - 65,285,914 (-)NCBIGRCr8
mRatBN7.21151,792,143 - 51,823,016 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1151,795,024 - 51,822,938 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01154,373,794 - 54,404,704 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1154,377,374 - 54,404,612 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01157,535,086 - 57,565,999 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41153,036,752 - 53,065,176 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11153,094,980 - 53,123,481 (-)NCBI
Celera1151,399,119 - 51,429,954 (-)NCBICelera
Cytogenetic Map11q21NCBI
CIP2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383108,549,864 - 108,589,438 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3108,549,864 - 108,589,644 (-)EnsemblGRCh38hg38GRCh38
GRCh373108,268,711 - 108,308,285 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363109,752,094 - 109,790,980 (-)NCBINCBI36Build 36hg18NCBI36
Build 343109,752,094 - 109,790,980NCBI
Celera3106,665,331 - 106,705,415 (-)NCBICelera
Cytogenetic Map3q13.13NCBI
HuRef3105,641,938 - 105,682,017 (-)NCBIHuRef
CHM1_13108,232,834 - 108,272,603 (-)NCBICHM1_1
T2T-CHM13v2.03111,258,902 - 111,309,711 (-)NCBIT2T-CHM13v2.0
Cip2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391648,814,524 - 48,840,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1648,814,548 - 48,840,072 (+)EnsemblGRCm39 Ensembl
GRCm381648,994,157 - 49,019,716 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1648,994,185 - 49,019,709 (+)EnsemblGRCm38mm10GRCm38
MGSCv371648,994,301 - 49,019,818 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361648,913,814 - 48,939,328 (+)NCBIMGSCv36mm8
Celera1649,344,570 - 49,370,085 (+)NCBICelera
Cytogenetic Map16B5NCBI
cM Map1630.75NCBI
Cip2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554279,448,102 - 9,480,729 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554279,448,102 - 9,480,729 (-)NCBIChiLan1.0ChiLan1.0
CIP2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22106,510,500 - 106,565,273 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13106,519,913 - 106,570,052 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03105,668,385 - 105,714,487 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13112,606,927 - 112,646,345 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3112,606,933 - 112,646,345 (-)Ensemblpanpan1.1panPan2
CIP2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13313,807,985 - 13,843,296 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3313,808,738 - 13,843,195 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3313,914,424 - 13,949,183 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03313,974,460 - 14,009,049 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3313,974,469 - 14,008,815 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13313,843,821 - 13,878,326 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03313,909,984 - 13,944,741 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03314,322,610 - 14,357,176 (-)NCBIUU_Cfam_GSD_1.0
Cip2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602140,583,645 - 140,621,079 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366452,224,587 - 2,261,881 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366452,224,034 - 2,261,970 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIP2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13150,934,106 - 150,966,424 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113150,934,065 - 150,966,326 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CIP2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12272,192,788 - 72,234,020 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2272,193,060 - 72,231,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604194,238,791 - 94,281,856 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cip2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473140,541,869 - 40,572,565 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cip2a
60 total Variants

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:85
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000033837
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
4889859Pur28Proteinuria QTL 2819.50.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)114545932375190161Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)111945620576331918Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat

1 to 10 of 20 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 216 96 93 44 60 31



Ensembl Acc Id: ENSRNOT00000033837   ⟹   ENSRNOP00000031394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,795,024 - 51,822,938 (-)Ensembl
Rnor_6.0 Ensembl1154,377,374 - 54,404,612 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101749   ⟹   ENSRNOP00000084633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1151,795,024 - 51,822,938 (-)Ensembl
RefSeq Acc Id: NM_001427687   ⟹   NP_001414616
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,255,123 - 65,285,914 (-)NCBI
RefSeq Acc Id: XM_039088875   ⟹   XP_038944803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,258,005 - 65,278,332 (-)NCBI
mRatBN7.21151,792,143 - 51,815,342 (-)NCBI
Protein RefSeqs NP_001414616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038944803 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM11105 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000031394
  ENSRNOP00000031394.4
  ENSRNOP00000084633.1
Ensembl Acc Id: ENSRNOP00000031394   ⟸   ENSRNOT00000033837
RefSeq Acc Id: XP_038944803   ⟸   XM_039088875
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000084633   ⟸   ENSRNOT00000101749
RefSeq Acc Id: NP_001414616   ⟸   NM_001427687
- UniProtKB: D3ZF50 (UniProtKB/TrEMBL),   A0A8I5ZXN3 (UniProtKB/TrEMBL)
CIP2A N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZF50-F1-model_v2 AlphaFold D3ZF50 1-909 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13698127
Promoter ID:EPDNEW_R8649
Type:multiple initiation site
Name:Cip2a_1
Description:cell proliferation regulating inhibitor of protein phosphatase2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01154,404,658 - 54,404,718EPDNEW


1 to 19 of 19 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-21425 BioCyc
Ensembl Genes ENSRNOG00000039183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033837 ENTREZGENE
  ENSRNOT00000033837.5 UniProtKB/TrEMBL
  ENSRNOT00000101749.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CIP2A UniProtKB/TrEMBL
  CIP2A_N UniProtKB/TrEMBL
NCBI Gene 360711 ENTREZGENE
PANTHER PROTEIN CIP2A UniProtKB/TrEMBL
  PTHR23161 UniProtKB/TrEMBL
Pfam CIP2A_N UniProtKB/TrEMBL
PhenoGen Cip2a PhenoGen
RatGTEx ENSRNOG00000039183 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I5ZXN3 ENTREZGENE, UniProtKB/TrEMBL
  D3ZF50 ENTREZGENE, UniProtKB/TrEMBL
1 to 19 of 19 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Cip2a  cellular inhibitor of PP2A  Cip2a  cell proliferation regulating inhibitor of protein phosphatase 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-07-18 Cip2a  cell proliferation regulating inhibitor of protein phosphatase 2A  RGD1310335  similar to RIKEN cDNA C330027C09  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1310335  similar to RIKEN cDNA C330027C09   RGD1310335_predicted  similar to RIKEN cDNA C330027C09 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1310335_predicted  similar to RIKEN cDNA C330027C09 (predicted)  LOC360711_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360711_predicted  similar to RIKEN cDNA C330027C09 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL