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Gene: Slc35c1 (solute carrier family 35 member C1) Rattus norvegicus

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Symbol:

Slc35c1

Name:

solute carrier family 35 member C1

RGD ID:

1309463

Description:

Predicted to enable GDP-fucose transmembrane transporter activity and antiporter activity. Predicted to be involved in GDP-L-fucose biosynthetic process; GDP-fucose import into Golgi lumen; and protein O-linked fucosylation. Predicted to act upstream of or within lipid glycosylation and negative regulation of Notch signaling pathway. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Orthologous to human SLC35C1 (solute carrier family 35 member C1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

GDP-fucose transporter 1; LOC311204; solute carrier family 35 (GDP-fucose transporter), member C1; solute carrier family 35, member C1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35C1 (solute carrier family 35 member C1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Slc35c1 (solute carrier family 35, member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35c1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35C1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35C1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35c1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35C1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35C1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35c1 (solute carrier family 35 member C1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC35C1 (solute carrier family 35 member C1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc35c1 (solute carrier family 35, member C1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35c1 (solute carrier family 35 member C1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nstp-10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	nac	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	nstp-9	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc35c1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	98,877,413 - 98,887,411 (-)	NCBI		GRCr8
mRatBN7.2	3	78,421,925 - 78,429,603 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,421,933 - 78,428,520 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	81,897,590 - 81,904,126 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	90,496,631 - 90,503,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	88,347,629 - 88,354,165 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	81,361,080 - 81,369,010 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,361,056 - 81,368,442 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	88,065,131 - 88,073,052 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	76,847,879 - 76,854,414 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	76,744,291 - 76,759,292 (-)	NCBI
Celera	3	77,623,903 - 77,630,438 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation (ISO)

congenital disorder of glycosylation type IIc (ISO,ISS)

genetic disease (ISO)

infantile Refsum disease (ISO)

intellectual disability (ISO)

prostate cancer (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

aflatoxin B1 (EXP,ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dioxygen (ISO)

doxorubicin (ISO)

flutamide (EXP)

gentamycin (EXP)

hydralazine (ISO)

indometacin (ISO)

inulin (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phytoestrogen (ISO)

rac-lactic acid (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

'de novo' GDP-L-fucose biosynthetic process (ISO)

biological_process (ND)

GDP-fucose import into Golgi lumen (IBA,ISO)

GDP-L-fucose salvage (ISO)

lipid glycosylation (ISO)

negative regulation of Notch signaling pathway (ISO)

Cellular Component

Golgi apparatus (IBA,ISO)

Golgi membrane (ISO)

Molecular Function

antiporter activity (IBA)

GDP-fucose transmembrane transporter activity (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Complementation cloning identifies CDG-IIc, a new type of congenital disorders of glycosylation, as a GDP-fucose transporter deficiency.	Lubke T, etal., Nat Genet. 2001 May;28(1):73-6.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:18308723	PMID:20837470

Genomics

Comparative Map Data

Slc35c1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	98,877,413 - 98,887,411 (-)	NCBI		GRCr8
mRatBN7.2	3	78,421,925 - 78,429,603 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	78,421,933 - 78,428,520 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	81,897,590 - 81,904,126 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	90,496,631 - 90,503,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	88,347,629 - 88,354,165 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	81,361,080 - 81,369,010 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	81,361,056 - 81,368,442 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	88,065,131 - 88,073,052 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	76,847,879 - 76,854,414 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	76,744,291 - 76,759,292 (-)	NCBI
Celera	3	77,623,903 - 77,630,438 (-)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

SLC35C1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	45,804,079 - 45,813,016 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	45,804,072 - 45,813,016 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	45,825,630 - 45,834,567 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	45,783,912 - 45,791,143 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	45,783,911 - 45,791,142	NCBI
Celera	11	45,973,214 - 45,982,158 (+)	NCBI		Celera
Cytogenetic Map	11	p11.2	NCBI
HuRef	11	45,532,910 - 45,541,854 (+)	NCBI		HuRef
CHM1_1	11	45,823,053 - 45,831,997 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	45,960,045 - 45,968,982 (+)	NCBI		T2T-CHM13v2.0

Slc35c1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	92,283,109 - 92,290,863 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	92,283,109 - 92,290,883 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	92,452,764 - 92,460,518 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	92,452,764 - 92,460,538 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	92,292,921 - 92,300,675 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	92,253,603 - 92,261,357 (-)	NCBI		MGSCv36	mm8
Celera	2	93,846,099 - 93,853,774 (-)	NCBI		Celera
Cytogenetic Map	2	E1	NCBI
cM Map	2	51.05	NCBI

Slc35c1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	2,130,453 - 2,139,145 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	2,130,561 - 2,139,145 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC35C1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	48,012,714 - 48,021,430 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	48,019,283 - 48,027,999 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	45,758,274 - 45,766,991 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	46,250,488 - 46,259,409 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	46,250,488 - 46,259,409 (+)	Ensembl	panpan1.1		panPan2

SLC35C1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	43,603,695 - 43,611,381 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	43,605,315 - 43,610,229 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	42,333,209 - 42,337,886 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	44,259,009 - 44,267,136 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	44,258,890 - 44,265,852 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	43,745,326 - 43,750,001 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	43,298,619 - 43,303,287 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	44,030,651 - 44,035,359 (-)	NCBI		UU_Cfam_GSD_1.0

Slc35c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	21,076,613 - 21,086,992 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936562	3,190,962 - 3,198,884 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936562	3,190,955 - 3,198,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35C1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	16,647,193 - 16,658,672 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	16,650,771 - 16,658,891 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	17,854,696 - 17,864,881 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35C1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	19,534,437 - 19,541,990 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	19,530,466 - 19,541,551 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	116,809,653 - 116,817,164 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35c1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	2,664,245 - 2,673,425 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	2,665,046 - 2,673,286 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc35c1
31 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	828
Count of miRNA genes:	308
Interacting mature miRNAs:	397
Transcripts:	ENSRNOT00000067509
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300178	Hrtrt4	Heart rate QTL 4	3.74		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	43827364	90905114	Rat
61377	Edpm3	Estrogen-dependent pituitary mass QTL 3	7.05	0.038	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	53184692	89878207	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1331795	Rf30	Renal function QTL 30	3.708		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	3	39454637	89115240	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1331777	Bw24	Body weight QTL 24	3.503		body mass (VT:0001259)	body weight (CMO:0000012)	3	39454637	89115240	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat
731180	Bp152	Blood pressure QTL 152		0.03	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	53781112	91609953	Rat
738019	Anxrr10	Anxiety related response QTL 10	3.9		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	3	38517803	83517803	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	61134348	89115068	Rat
61419	Cia11	Collagen induced arthritis QTL 11	5.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	3	30356773	98535386	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	41874578	104104347	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	33703347	104104347	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	47233430	110362260	Rat

Markers in Region

D3Rat177

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	78,443,070 - 78,443,203 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	81,382,226 - 81,382,358	NCBI	Rnor6.0
Rnor_5.0	3	88,086,277 - 88,086,409	UniSTS	Rnor5.0
RGSC_v3.4	3	76,869,009 - 76,869,141	RGD	RGSC3.4
RGSC_v3.4	3	76,869,010 - 76,869,142	UniSTS	RGSC3.4
RGSC_v3.1	3	76,765,437 - 76,765,569	RGD
Celera	3	77,645,034 - 77,645,166	UniSTS
SHRSP x BN Map	3	42.7898	UniSTS
SHRSP x BN Map	3	42.7898	RGD
Cytogenetic Map	3	q24	UniSTS

RH129342

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	78,422,013 - 78,422,210 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	81,361,169 - 81,361,365	NCBI	Rnor6.0
Rnor_5.0	3	88,065,220 - 88,065,416	UniSTS	Rnor5.0
RGSC_v3.4	3	76,847,953 - 76,848,149	UniSTS	RGSC3.4
Celera	3	77,623,977 - 77,624,173	UniSTS
Cytogenetic Map	3	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067509 ⟹ ENSRNOP00000059968

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	78,421,933 - 78,428,520 (-)	Ensembl
Rnor_6.0 Ensembl	3	81,361,095 - 81,367,630 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087884 ⟹ ENSRNOP00000072860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	3	81,361,056 - 81,368,442 (-)	Ensembl

RefSeq Acc Id:

NM_001107748 ⟹ NP_001101218

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	98,877,423 - 98,883,958 (-)	NCBI
mRatBN7.2	3	78,421,940 - 78,428,475 (-)	NCBI
Rnor_6.0	3	81,361,095 - 81,367,630 (-)	NCBI
Rnor_5.0	3	88,065,131 - 88,073,052 (-)	NCBI
RGSC_v3.4	3	76,847,879 - 76,854,414 (-)	RGD
Celera	3	77,623,903 - 77,630,438 (-)	RGD

Sequence:

show sequence

CTTGAATTCAGTTCGTGGCAGCCGCGGGGCCTTGCTCCGGCCAGGCCCCTGTCCGTGTCCCTCG
AGACGCCTCCCGGAACCTCGGTGATCTGATCCCTGCCGCACGCCCTCCCTTCGGCTCCGCGGGT
GCTTCCGGGGGCTCCCGCAGCCCATGCCTCCCTCTCCCGCTCTCTCGCTTCTTTTCTCCCTGAG
ACTCACATGCCTCCTGTCGTCAAGCAGGCCATGGCTGTCAGGGCCTACATCCTTAGTTAGGCCC
CTTCTCCCTTCCCTGGGTCTTGCTTCATGAGTCCCACCCCTCGACCCCCCACCCCCGGGAGAGA
ACAAGATGAGGAGCGGTGCACCTCGGCAAATCCGGAAGCAGAACTTCATCCAAGAAGGAGGGGA
CCGATAGGTCACCCCATGTGACAATTGAATCCTGCAGCCACAGGCCCTAGCAGCTTGAAGCCCT
GTAGTCCAGGGAATGCTTCTGGCAGTGAGGTGACCCAGCTCTTCTGCCACCATGAACAGGGTCC
CTCTGAAGCGGTCCAGGATCCTGCGCATGGCGCTGACTGGAGCCTCTGCTGTCTCTGAGGAGGC
AGACAGCGAGAACAAGCCATTTCTGCTACGGGCTCTGCAGATCGCGCTGGTGGTTTCTCTCTAC
TGGGTCACCTCCATCTCCATGGTATTCCTCAACAAGTACCTGCTGGACAGCCCCTCCCTGCAGC
TGGATACCCCCATCTTCGTCACCTTCTACCAATGCCTGGTGACCTCACTGCTGTGCAAGGGCCT
CAGCACTCTGGCCACCTGCTGCCCTGGCATGGTAGACTTCCCCACCCTAAACCTGGACCTCAAG
GTGGCCCGAAGTGTGCTGCCGCTGTCCGTGGTCTTTATCGGCATGATAACCTTCAATAACCTCT
GCCTCAAGTACGTGGGGGTGGCCTTCTACAACGTGGGACGCTCGCTCACTACCGTGTTCAATGT
GCTTCTCTCCTACCTGCTGCTTAAACAGACCACTTCCTTTTATGCCCTGCTCACCTGTGCCATC
ATCATTGGTGGTTTCTGGCTGGGAATAGATCAAGAGGGAGCTGAGGGCACCCTGTCCCTGACGG
GCACCATCTTCGGGGTGCTGGCCAGCCTCTGTGTCTCACTCAATGCCATCTACACCAAGAAGGT
GCTCCCTGCCGTAGACCACAGTATCTGGCGCCTAACCTTCTATAACAACGTCAACGCCTGTGTG
CTCTTCTTGCCCCTGATGGTAGTGCTGGGCGAGCTCCATGCTCTCCTGGCCTTCGCTCATCTGA
ACAGCGCCCACTTCTGGGTCATGATGACGCTGGGTGGACTCTTCGGCTTTGCCATTGGCTATGT
GACAGGACTGCAGATCAAATTCACCAGTCCCCTGACCCATAATGTGTCGGGCACAGCCAAGGCC
TGTGCACAGACAGTGCTGGCTGTGCTCTACTATGAAGAGATTAAGAGCTTCCTGTGGTGGACAA
GCAACTTGATGGTGCTGGGTGGCTCCTCTGCCTACACCTGGGTCAGGGGCTGGGAGATGCAGAA
GACCCAGGAGGACCCCAGCTCCAAAGAGGGTGAGAAGAGTGCTATCGGGGTGTGAGCTCCTTCA
AGGACCCAGGGCTGAGCTCAGGTGGGGCCTACCCAGCACTGCAGGCTTCCCACAGAGCCAACTG
GGTATGGCCCTGAGCAACATTGTTTACATCCTCCTCAGAGTATGATCTAAGAGGAGCCAGGTTC
TTTCCTGGTAATGTCTGAAAGCTGCCAAATCTCTTATCTGCCCCCATCTTCTTGTCTTGGGAAA
GCCCTACTGGGAGTGGCACCCTTCCTGCCTTCTCCTGGGGCCTGACTACCTCCATATCGCCTCT
GGGGTTGGGTCCAGCTGCAGTCTTTGGGGACGGGACTGATGAAGTGATGTCTTACTTTCTACAC
AAGGGAGATGGGTTGTGACCCTACTATAACTAGTTGAAGGGAGCTGGGTGACCCCCCACATCTC
TGCGGCCCTGGGCAGGTAGCATAATAGGTCAGGTGCTATTAACATCAGTAACACTCCAGACTAG
CTTTGGAGGCCCTTGGGAGCTGAACCAAGCAAGAGAGGAAATGGCCATTCTGCTCTCTTCTGTG
TGGATGGGTATGACAGGCCAACTGTCCATGGGAACTGCACCCAGGGTGGCTGAGAAAACACTCA
CCTTTGTACTCTATATTTGCAGCTTTAAACAGAGGGAGCCACGAGTTTTACACATTAAGTAGAG
AGATGAATGCCTCCACAGCCCCTAACCCCAGCTTTTCCTGCCTGACTTCTCTTGGTCCAGAGGG
GTCACCATCCTGTTCTCCAACACCTGGCCCAGCTACATGGCTGTCCCCTCTTTCTGTACTCCCT
TTTTCCCCATCAGCCTACCCCAATGCCTCTATCTGCAGGCAGGAAGAGGGGTCCACTCATAGCC
TCTGTTCCCATGTGCTTGGACCCCCGAGCCCTTCGTGACGTAAGAGACACTTACCTTCTCTGAG
GCTGGAGCTGAAAGGGCCCACTGATTCTCTGAGTTAGCCCATCAGGCTCCTGTCACAAGACAGC
CTACACCCGTGTGGCTAAGAACAGTGGAGGTTGGTTTATAAGTCCACATAAACCCAGTGTTTCA
GAGGAAACCCCTCTGTTCACATTCTCACATGGTAGAGGCACAGATAAAATCCCTCGGGCCTCTT
ATACAGGAGTACTAGCCCCATTCATGAGGGCTCCACCCCATGACCTAATCACCCCCAAAGCCTT
CAACATACGGACTCCCACATGAATTTGGGGACAGAAGTACCGGACCATGATACCCCAGCACCAC
ACCCTCCTAACCTCAGGGTAGCTGTCACTGTTCTAGTCCCTTCTGTTTGGCCTTTTTTACCCCC
ATGTCCTTGGGGTAATGTTTGATGTCTTTGTCCCTTTCATGAAAAGATGGGGAAACTGTGTTTG
CCTTTGATTTCTACTTCCCACAGGTTCTAATGAAGTTGGTGGGGCCTGCTGGCCTGAGTTGTAT
GTGATTTAATAAAACAAAC

hide sequence

RefSeq Acc Id:

XM_006234568 ⟹ XP_006234630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	98,877,413 - 98,887,411 (-)	NCBI
mRatBN7.2	3	78,421,925 - 78,429,601 (-)	NCBI
Rnor_6.0	3	81,361,080 - 81,369,010 (-)	NCBI
Rnor_5.0	3	88,065,131 - 88,073,052 (-)	NCBI

Sequence:

show sequence

AGACAGGCCTTGAACTTTTGACCCTCCTACCTCAATTGGGATTACAGCCCTTTACCACCAGGCC
CTACTAATAAAACAGTAATTGAAATACTCTAAACCCGACATCTTTATAGCCAACCACACAAGCA
ATAAGTCTGGAACCATTTCCACAATAAAACCAGCTCCGCCTAGGGCAAACTTGCCTGCCCAACA
ATGGTGCTAGGGAGAAACGAGAGAAAAGTCAGTCCTGCCAGATGCCCTGGTGTAAAAGACCCCA
CTCAAGCCTGGTCCCCAGGGTACCCTTGTCAGGGAGTGGCTGCATTCGGAGTTTCTCCCAACCA
CACCCTTCTGGAAGCACCAGCTTGGATCGTAGGGCCAAGGATGCATCCTGATAAAGGGGCCAAG
GATGCATCTTGATCAAGGGACGTGCCAGCAACGGTAACAGAATGGAGGAGTCCCAGGATGGCAG
GGGCGGAAGGCAGGAGATGGTGTTGGCCTTAGATAAAGCAAAGGGGCCTTCTGGATGGGCTCCC
GGGGTAATCGCCCCACCTCGCCCAGAGCCGGACGTGGCACGCGCTGGGGACAGCGAGCAGGAAG
TCGTACCGGGGGCGCGGCTTGGGCAGCGTTGCAAGTGCAGCGGAGGGCCGTGCAGCAGGTGTAC
CTGAGGGCACCGCCGGGTGTGAACACCAGGTCTCTGCCTCAGCCAGGACGCTAGAGCCCAGGCG
GGTGAACGGACGGGTCCCTCTGAAGCGGTCCAGGATCCTGCGCATGGCGCTGACTGGAGCCTCT
GCTGTCTCTGAGGAGGCAGACAGCGAGAACAAGCCATTTCTGCTACGGGCTCTGCAGATCGCGC
TGGTGGTTTCTCTCTACTGGGTCACCTCCATCTCCATGGTATTCCTCAACAAGTACCTGCTGGA
CAGCCCCTCCCTGCAGCTGGATACCCCCATCTTCGTCACCTTCTACCAATGCCTGGTGACCTCA
CTGCTGTGCAAGGGCCTCAGCACTCTGGCCACCTGCTGCCCTGGCATGGTAGACTTCCCCACCC
TAAACCTGGACCTCAAGGTGGCCCGAAGTGTGCTGCCGCTGTCCGTGGTCTTTATCGGCATGAT
AACCTTCAATAACCTCTGCCTCAAGTACGTGGGGGTGGCCTTCTACAACGTGGGACGCTCGCTC
ACTACCGTGTTCAATGTGCTTCTCTCCTACCTGCTGCTTAAACAGACCACTTCCTTTTATGCCC
TGCTCACCTGTGCCATCATCATTGGTGGTTTCTGGCTGGGAATAGATCAAGAGGGAGCTGAGGG
CACCCTGTCCCTGACGGGCACCATCTTCGGGGTGCTGGCCAGCCTCTGTGTCTCACTCAATGCC
ATCTACACCAAGAAGGTGCTCCCTGCCGTAGACCACAGTATCTGGCGCCTAACCTTCTATAACA
ACGTCAACGCCTGTGTGCTCTTCTTGCCCCTGATGGTAGTGCTGGGCGAGCTCCATGCTCTCCT
GGCCTTCGCTCATCTGAACAGCGCCCACTTCTGGGTCATGATGACGCTGGGTGGACTCTTCGGC
TTTGCCATTGGCTATGTGACAGGACTGCAGATCAAATTCACCAGTCCCCTGACCCATAATGTGT
CGGGCACAGCCAAGGCCTGTGCACAGACAGTGCTGGCTGTGCTCTACTATGAAGAGATTAAGAG
CTTCCTGTGGTGGACAAGCAACTTGATGGTGCTGGGTGGCTCCTCTGCCTACACCTGGGTCAGG
GGCTGGGAGATGCAGAAGACCCAGGAGGACCCCAGCTCCAAAGAGGGTGAGAAGAGTGCTATCG
GGGTGTGAGCTCCTTCAAGGACCCAGGGCTGAGCTCAGGTGGGGCCTACCCAGCACTGCAGGCT
TCCCACAGAGCCAACTGGGTATGGCCCTGAGCAACATTGTTTACATCCTCCTCAGAGTATGATC
TAAGAGGAGCCAGGTTCTTTCCTGGTAATGTCTGAAAGCTGCCAAATCTCTTATCTGCCCCCAT
CTTCTTGTCTTGGGAAAGCCCTACTGGGAGTGGCACCCTTCCTGCCTTCTCCTGGGGCCTGACT
ACCTCCATATCGCCTCTGGGGTTGGGTCCAGCTGCAGTCTTTGGGGACGGGACTGATGAAGTGA
TGTCTTACTTTCTACACAAGGGAGATGGGTTGTGACCCTACTATAACTAGTTGAAGGGAGCTGG
GTGACCCCCCACATCTCTGCGGCCCTGGGCAGGTAGCATAATAGGTCAGGTGCTATTAACATCA
GTAACACTCCAGACTAGCTTTGGAGGCCCTTGGGAGCTGAACCAAGCAAGAGAGGAAATGGCCA
TTCTGCTCTCTTCTGTGTGGATGGGTATGACAGGCCAACTGTCCATGGGAACTGCACCCAGGGT
GGCTGAGAAAACACTCACCTTTGTACTCTATATTTGCAGCTTTAAACAGAGGGAGCCACGAGTT
TTACACATTAAGTAGAGAGATGAATGCCTCCACAGCCCCTAACCCCAGCTTTTCCTGCCTGACT
TCTCTTGGTCCAGAGGGGTCACCATCCTGTTCTCCAACACCTGGCCCAGCTACATGGCTGTCCC
CTCTTTCTGTACTCCCTTTTTCCCCATCAGCCTACCCCAATGCCTCTATCTGCAGGCAGGAAGA
GGGGTCCACTCATAGCCTCTGTTCCCATGTGCTTGGACCCCCGAGCCCTTCGTGACGTAAGAGA
CACTTACCTTCTCTGAGGCTGGAGCTGAAAGGGCCCACTGATTCTCTGAGTTAGCCCATCAGGC
TCCTGTCACAAGACAGCCTACACCCGTGTGGCTAAGAACAGTGGAGGTTGGTTTATAAGTCCAC
ATAAACCCAGTGTTTCAGAGGAAACCCCTCTGTTCACATTCTCACATGGTAGAGGCACAGATAA
AATCCCTCGGGCCTCTTATACAGGAGTACTAGCCCCATTCATGAGGGCTCCACCCCATGACCTA
ATCACCCCCAAAGCCTTCAACATACGGACTCCCACATGAATTTGGGGACAGAAGTACCGGACCA
TGATACCCCAGCACCACACCCTCCTAACCTCAGGGTAGCTGTCACTGTTCTAGTCCCTTCTGTT
TGGCCTTTTTTACCCCCATGTCCTTGGGGTAATGTTTGATGTCTTTGTCCCTTTCATGAAAAGA
TGGGGAAACTGTGTTTGCCTTTGATTTCTACTTCCCACAGGTTCTAATGAAGTTGGTGGGGCCT
GCTGGCCTGAGTTGTATGTGATTTAATAAAACAAACAAACAACGCACGATA

hide sequence

RefSeq Acc Id:

XM_008762026 ⟹ XP_008760248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	98,877,413 - 98,887,411 (-)	NCBI
mRatBN7.2	3	78,421,925 - 78,429,603 (-)	NCBI
Rnor_6.0	3	81,361,080 - 81,369,010 (-)	NCBI

Sequence:

show sequence

AGACAGGCCTTGAACTTTTGACCCTCCTACCTCAATTGGGATTACAGCCCTTTACCACCAGGCC
CTACTAATAAAACAGTAATTGAAATACTCTAAACCCGACATCTTTATAGCCAACCACACAAGCA
ATAAGTCTGGAACCATTTCCACAATAAAACCAGCTCCGCCTAGGGCAAACTTGCCTGCCCAACA
ATGGTGCTAGGGAGAAACGAGAGAAAAGTCAGTCCTGCCAGATGCCCTGGTGTAAAAGACCCCA
CTCAAGCCTGGTCCCCAGGGTACCCTTGTCAGGGAGTGGCTGCATTCGGAGTTTCTCCCAACCA
CACCCTTCTGGAAGCACCAGCTTGGATCGTAGGGCCAAGGATGCATCCTGATAAAGGGGCCAAG
GATGCATCTTGATCAAGGGACGTGCCAGCAACGGTAACAGAATGGAGGAGTCCCAGGATGGCAG
GGGCGGAAGGCAGGAGATGGTGTTGGCCTTAGATAAAGCAAAGGGGCCTTCTGGATGGGCTCCC
GGGGTAATCGCCCCACCTCGCCCAGAGCCGGACGTGGCACGCGCTGGGGACAGCGAGCAGGAAG
TCGTACCGGGGGCGCGGCTTGGGCAGCGTTGCAAGTGCAGCGGAGGGCCGTGCAGCAGGTGTAC
CTGAGGGCACCGCCGGGTGTGAACACCAGGTCTCTGCCTCAGCCAGGACGCTAGAGCCCAGGCG
GGTGAACGGACGGTACGTTCTGGAAGGGGGTCCCTCTGAAGCGGTCCAGGATCCTGCGCATGGC
GCTGACTGGAGCCTCTGCTGTCTCTGAGGAGGCAGACAGCGAGAACAAGCCATTTCTGCTACGG
GCTCTGCAGATCGCGCTGGTGGTTTCTCTCTACTGGGTCACCTCCATCTCCATGGTATTCCTCA
ACAAGTACCTGCTGGACAGCCCCTCCCTGCAGCTGGATACCCCCATCTTCGTCACCTTCTACCA
ATGCCTGGTGACCTCACTGCTGTGCAAGGGCCTCAGCACTCTGGCCACCTGCTGCCCTGGCATG
GTAGACTTCCCCACCCTAAACCTGGACCTCAAGGTGGCCCGAAGTGTGCTGCCGCTGTCCGTGG
TCTTTATCGGCATGATAACCTTCAATAACCTCTGCCTCAAGTACGTGGGGGTGGCCTTCTACAA
CGTGGGACGCTCGCTCACTACCGTGTTCAATGTGCTTCTCTCCTACCTGCTGCTTAAACAGACC
ACTTCCTTTTATGCCCTGCTCACCTGTGCCATCATCATTGGTGGTTTCTGGCTGGGAATAGATC
AAGAGGGAGCTGAGGGCACCCTGTCCCTGACGGGCACCATCTTCGGGGTGCTGGCCAGCCTCTG
TGTCTCACTCAATGCCATCTACACCAAGAAGGTGCTCCCTGCCGTAGACCACAGTATCTGGCGC
CTAACCTTCTATAACAACGTCAACGCCTGTGTGCTCTTCTTGCCCCTGATGGTAGTGCTGGGCG
AGCTCCATGCTCTCCTGGCCTTCGCTCATCTGAACAGCGCCCACTTCTGGGTCATGATGACGCT
GGGTGGACTCTTCGGCTTTGCCATTGGCTATGTGACAGGACTGCAGATCAAATTCACCAGTCCC
CTGACCCATAATGTGTCGGGCACAGCCAAGGCCTGTGCACAGACAGTGCTGGCTGTGCTCTACT
ATGAAGAGATTAAGAGCTTCCTGTGGTGGACAAGCAACTTGATGGTGCTGGGTGGCTCCTCTGC
CTACACCTGGGTCAGGGGCTGGGAGATGCAGAAGACCCAGGAGGACCCCAGCTCCAAAGAGGGT
GAGAAGAGTGCTATCGGGGTGTGAGCTCCTTCAAGGACCCAGGGCTGAGCTCAGGTGGGGCCTA
CCCAGCACTGCAGGCTTCCCACAGAGCCAACTGGGTATGGCCCTGAGCAACATTGTTTACATCC
TCCTCAGAGTATGATCTAAGAGGAGCCAGGTTCTTTCCTGGTAATGTCTGAAAGCTGCCAAATC
TCTTATCTGCCCCCATCTTCTTGTCTTGGGAAAGCCCTACTGGGAGTGGCACCCTTCCTGCCTT
CTCCTGGGGCCTGACTACCTCCATATCGCCTCTGGGGTTGGGTCCAGCTGCAGTCTTTGGGGAC
GGGACTGATGAAGTGATGTCTTACTTTCTACACAAGGGAGATGGGTTGTGACCCTACTATAACT
AGTTGAAGGGAGCTGGGTGACCCCCCACATCTCTGCGGCCCTGGGCAGGTAGCATAATAGGTCA
GGTGCTATTAACATCAGTAACACTCCAGACTAGCTTTGGAGGCCCTTGGGAGCTGAACCAAGCA
AGAGAGGAAATGGCCATTCTGCTCTCTTCTGTGTGGATGGGTATGACAGGCCAACTGTCCATGG
GAACTGCACCCAGGGTGGCTGAGAAAACACTCACCTTTGTACTCTATATTTGCAGCTTTAAACA
GAGGGAGCCACGAGTTTTACACATTAAGTAGAGAGATGAATGCCTCCACAGCCCCTAACCCCAG
CTTTTCCTGCCTGACTTCTCTTGGTCCAGAGGGGTCACCATCCTGTTCTCCAACACCTGGCCCA
GCTACATGGCTGTCCCCTCTTTCTGTACTCCCTTTTTCCCCATCAGCCTACCCCAATGCCTCTA
TCTGCAGGCAGGAAGAGGGGTCCACTCATAGCCTCTGTTCCCATGTGCTTGGACCCCCGAGCCC
TTCGTGACGTAAGAGACACTTACCTTCTCTGAGGCTGGAGCTGAAAGGGCCCACTGATTCTCTG
AGTTAGCCCATCAGGCTCCTGTCACAAGACAGCCTACACCCGTGTGGCTAAGAACAGTGGAGGT
TGGTTTATAAGTCCACATAAACCCAGTGTTTCAGAGGAAACCCCTCTGTTCACATTCTCACATG
GTAGAGGCACAGATAAAATCCCTCGGGCCTCTTATACAGGAGTACTAGCCCCATTCATGAGGGC
TCCACCCCATGACCTAATCACCCCCAAAGCCTTCAACATACGGACTCCCACATGAATTTGGGGA
CAGAAGTACCGGACCATGATACCCCAGCACCACACCCTCCTAACCTCAGGGTAGCTGTCACTGT
TCTAGTCCCTTCTGTTTGGCCTTTTTTACCCCCATGTCCTTGGGGTAATGTTTGATGTCTTTGT
CCCTTTCATGAAAAGATGGGGAAACTGTGTTTGCCTTTGATTTCTACTTCCCACAGGTTCTAAT
GAAGTTGGTGGGGCCTGCTGGCCTGAGTTGTATGTGATTTAATAAAACAAACAAACAACGCACG
ATA

hide sequence

RefSeq Acc Id:

XM_039104908 ⟹ XP_038960836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	98,877,413 - 98,887,411 (-)	NCBI
mRatBN7.2	3	78,421,925 - 78,429,603 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101218	(Get FASTA)	NCBI Sequence Viewer
	XP_006234630	(Get FASTA)	NCBI Sequence Viewer
	XP_008760248	(Get FASTA)	NCBI Sequence Viewer
	XP_038960836	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79578	(Get FASTA)	NCBI Sequence Viewer
	EDL79579	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059968.1

RefSeq Acc Id:

NP_001101218 ⟸ NM_001107748

- UniProtKB:

D3ZWW0 (UniProtKB/TrEMBL), A6HNH7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNRVPLKRSRILRMALTGASAVSEEADSENKPFLLRALQIALVVSLYWVTSISMVFLNKYLLDS
PSLQLDTPIFVTFYQCLVTSLLCKGLSTLATCCPGMVDFPTLNLDLKVARSVLPLSVVFIGMIT
FNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCAIIIGGFWLGIDQEGAEGT
LSLTGTIFGVLASLCVSLNAIYTKKVLPAVDHSIWRLTFYNNVNACVLFLPLMVVLGELHALLA
FAHLNSAHFWVMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEEIKSF
LWWTSNLMVLGGSSAYTWVRGWEMQKTQEDPSSKEGEKSAIGV

hide sequence

RefSeq Acc Id:	XP_006234630 ⟸ XM_006234568
- Peptide Label:	isoform X1
- UniProtKB:	A6HNH8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALTGASAVSEEADSENKPFLLRALQIALVVSLYWVTSISMVFLNKYLLDSPSLQLDTPIFVTF YQCLVTSLLCKGLSTLATCCPGMVDFPTLNLDLKVARSVLPLSVVFIGMITFNNLCLKYVGVAF YNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCAIIIGGFWLGIDQEGAEGTLSLTGTIFGVLAS LCVSLNAIYTKKVLPAVDHSIWRLTFYNNVNACVLFLPLMVVLGELHALLAFAHLNSAHFWVMM TLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEEIKSFLWWTSNLMVLGGS SAYTWVRGWEMQKTQEDPSSKEGEKSAIGV hide sequence

RefSeq Acc Id:	XP_008760248 ⟸ XM_008762026
- Peptide Label:	isoform X1
- UniProtKB:	A6HNH8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MALTGASAVSEEADSENKPFLLRALQIALVVSLYWVTSISMVFLNKYLLDSPSLQLDTPIFVTF YQCLVTSLLCKGLSTLATCCPGMVDFPTLNLDLKVARSVLPLSVVFIGMITFNNLCLKYVGVAF YNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCAIIIGGFWLGIDQEGAEGTLSLTGTIFGVLAS LCVSLNAIYTKKVLPAVDHSIWRLTFYNNVNACVLFLPLMVVLGELHALLAFAHLNSAHFWVMM TLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEEIKSFLWWTSNLMVLGGS SAYTWVRGWEMQKTQEDPSSKEGEKSAIGV hide sequence

Ensembl Acc Id:

ENSRNOP00000059968 ⟸ ENSRNOT00000067509

Ensembl Acc Id:

ENSRNOP00000072860 ⟸ ENSRNOT00000087884

RefSeq Acc Id:	XP_038960836 ⟸ XM_039104908
- Peptide Label:	isoform X1
- UniProtKB:	A6HNH8 (UniProtKB/TrEMBL)

Protein Domains

Sugar phosphate transporter

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWW0-F1-model_v2	AlphaFold	D3ZWW0	1-363	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692225

Promoter ID:

EPDNEW_R2750

Type:

multiple initiation site

Name:

Slc35c1_1

Description:

solute carrier family 35 member C1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2751

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	81,367,634 - 81,367,694	EPDNEW

RGD ID:

13692234

Promoter ID:

EPDNEW_R2751

Type:

initiation region

Name:

Slc35c1_2

Description:

solute carrier family 35 member C1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R2750

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	81,368,410 - 81,368,470	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1309463	AgrOrtholog
BioCyc Gene	G2FUF-48692	BioCyc
Ensembl Genes	ENSRNOG00000007732	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067509.2	UniProtKB/TrEMBL
InterPro	DUF250	UniProtKB/TrEMBL
	TPT_transporter	UniProtKB/TrEMBL
KEGG Report	rno:311204	UniProtKB/TrEMBL
NCBI Gene	311204	ENTREZGENE
PANTHER	PTHR11132:SF255	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 35	UniProtKB/TrEMBL
Pfam	TPT	UniProtKB/TrEMBL
PhenoGen	Slc35c1	PhenoGen
RatGTEx	ENSRNOG00000007732	RatGTEx
Superfamily-SCOP	Multidrug resistance efflux transporter EmrE	UniProtKB/TrEMBL
UniProt	A6HNH7	ENTREZGENE, UniProtKB/TrEMBL
	A6HNH8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWW0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc35c1	solute carrier family 35 member C1	Slc35c1	solute carrier family 35 (GDP-fucose transporter), member C1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc35c1	solute carrier family 35 (GDP-fucose transporter), member C1	Slc35c1	solute carrier family 35, member C1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc35c1	solute carrier family 35, member C1	Slc35c1_predicted	solute carrier family 35, member C1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc35c1_predicted	solute carrier family 35, member C1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

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Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM