B4galt7 (beta-1,4-galactosyltransferase 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: B4galt7 (beta-1,4-galactosyltransferase 7) Rattus norvegicus
Analyze
Symbol: B4galt7
Name: beta-1,4-galactosyltransferase 7
RGD ID: 1309214
Description: Predicted to enable beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity; manganese ion binding activity; and xylosylprotein 4-beta-galactosyltransferase activity. Predicted to be involved in several processes, including glycoprotein biosynthetic process; glycosaminoglycan biosynthetic process; and negative regulation of fibroblast proliferation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and Ehlers-Danlos syndrome spondylodysplastic type 1. Orthologous to human B4GALT7 (beta-1,4-galactosyltransferase 7); PARTICIPATES IN chondroitin sulfate biosynthetic pathway; heparan sulfate biosynthetic pathway; INTERACTS WITH acrylamide; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC364675; MGC116242; xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7; xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,023,667 - 9,032,742 (-)NCBIGRCr8
mRatBN7.2179,018,514 - 9,027,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,018,935 - 9,027,573 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,034,025 - 9,042,619 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,564,039 - 10,572,472 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,030,417 - 9,039,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,549,605 - 9,558,672 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,550,028 - 9,558,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,657,450 - 11,666,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,059,958 - 15,068,556 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,060,083 - 15,068,555 (-)NCBI
Celera179,100,550 - 9,109,148 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7RatEhlers-Danlos syndrome susceptibilityISOB4GALT7 (Homo sapiens)1599433DNA:transition:exon and 808C>T RGD 
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7Ratdyskeratosis congenita  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Dyskeratosis congenitaClinVarPMID:28492532
B4galt7RatEhlers-Danlos syndrome  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndromeClinVarPMID:25741868 more ...
B4galt7RatEhlers-Danlos syndrome dermatosparaxis type  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome and dermatosparaxis typeClinVarPMID:16770806 more ...
B4galt7RatEhlers-Danlos syndrome spondylodysplastic type 1  ISOB4GALT7 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:1221956 more ...
B4galt7RatEhlers-Danlos syndrome spondylodysplastic type 2  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome progeroid typeClinVarPMID:10473568 more ...
B4galt7RatEhlers-Danlos syndrome spondylodysplastic type 2  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome progeroid typeClinVarPMID:10473568 more ...
B4galt7Ratgenetic disease  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25533962 more ...
B4galt7RatLarsen-like syndrome B3GAT3 type  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Larsen-like syndrome and B3GAT3 typeClinVarPMID:1221956 more ...
B4galt7RatMarfanoid Mental Retardation Syndrome, Autosomal  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Marfanoid habitus and intellectual disabilityClinVarPMID:25741868
B4galt7RatSotos syndrome  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Sotos syndromeClinVarPMID:12464997 more ...
B4galt7RatTorrance type platyspondylic dysplasia  ISOB4GALT7 (Homo sapiens)8554872ClinVar Annotator: match by term: Lethal skeletal dysplasiaClinVarPMID:1221956 more ...
1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7RatCraniofacial Abnormalities  ISOB4GALT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:16759393
B4galt7RatEhlers-Danlos syndrome spondylodysplastic type 1  ISOB4GALT7 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7RatEhlers-Danlos syndrome spondylodysplastic type 1  ISOB4GALT7 (Homo sapiens)7240710 OMIM 

1 to 20 of 46 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7Rat(1->4)-beta-D-glucan multiple interactionsISOB4galt7 (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of B4GALT7 mRNACTDPMID:36331819
B4galt7Rat1,2-dichloroethane decreases expressionISOB4galt7 (Mus musculus)6480464ethylene dichloride results in decreased expression of B4GALT7 mRNACTDPMID:28960355
B4galt7Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOB4galt7 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of B4GALT7 mRNACTDPMID:21570461
B4galt7Rat3,3',5,5'-tetrabromobisphenol A increases expressionISOB4galt7 (Mus musculus)6480464tetrabromobisphenol A results in increased expression of B4GALT7 mRNACTDPMID:25172293
B4galt7Rat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOB4GALT7 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of B4GALT7 mRNACTDPMID:28628672
B4galt7Ratacrolein multiple interactionsISOB4GALT7 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of B4GALT7 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of B4GALT7 mRNACTDPMID:32699268
B4galt7Ratacrylamide increases expressionEXP 6480464Acrylamide results in increased expression of B4GALT7 mRNACTDPMID:28959563
B4galt7Rataflatoxin B1 increases expressionISOB4galt7 (Mus musculus)6480464Aflatoxin B1 results in increased expression of B4GALT7 mRNACTDPMID:19770486
B4galt7Ratalpha-pinene multiple interactionsISOB4GALT7 (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of B4GALT7 mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of B4GALT7 mRNACTDPMID:32699268
B4galt7Rataristolochic acid A decreases expressionISOB4GALT7 (Homo sapiens)6480464aristolochic acid I results in decreased expression of B4GALT7 mRNA and aristolochic acid I results in decreased expression of B4GALT7 proteinCTDPMID:33212167
B4galt7Ratarsane multiple interactionsISOB4GALT7 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT7 mRNACTDPMID:39836092
B4galt7Ratarsenic atom multiple interactionsISOB4GALT7 (Homo sapiens)6480464[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of B4GALT7 mRNACTDPMID:39836092
B4galt7Ratatrazine decreases expressionISOB4GALT7 (Homo sapiens)6480464Atrazine results in decreased expression of B4GALT7 mRNACTDPMID:22378314
B4galt7Ratbenzo[a]pyrene increases methylationISOB4GALT7 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of B4GALT7 promoterCTDPMID:27901495
B4galt7Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of B4GALT7 mRNACTDPMID:25181051
B4galt7Ratbisphenol A increases expressionISOB4galt7 (Mus musculus)6480464bisphenol A results in increased expression of B4GALT7 mRNACTDPMID:33221593
B4galt7Ratbisphenol F multiple interactionsISOB4GALT7 (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in increased expression of B4GALT7 mRNACTDPMID:28628672
B4galt7Ratcadmium atom increases expressionISOB4GALT7 (Homo sapiens)6480464Cadmium results in increased expression of B4GALT7 mRNACTDPMID:24376830
B4galt7Ratcadmium atom multiple interactionsISOB4GALT7 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of B4GALT7 mRNACTDPMID:35301059
B4galt7Ratcadmium dichloride multiple interactionsISOB4GALT7 (Homo sapiens)6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of B4GALT7 mRNACTDPMID:35301059

1 to 20 of 46 rows

Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7Ratbiological_process  ND 159840702/2007: no relevant rat dataRGD 
B4galt7Ratcarbohydrate metabolic process involved_inIEAInterPro:IPR0038591600115GO_REF:0000002InterProGO_REF:0000002
B4galt7Ratglycosaminoglycan biosynthetic process involved_inISOB4GALT7 (Homo sapiens)1624291 PMID:10438455RGDPMID:10438455
B4galt7Ratglycosaminoglycan biosynthetic process involved_inISOB4galt7 (Mus musculus)1624291UniProtKB:Q9UBV7 more ...RGDPMID:20809901 and PMID:33208938
B4galt7Ratglycosaminoglycan biosynthetic process involved_inIEAUniProtKB:Q8R087 and ensembl:ENSMUSP000000685321600115GO_REF:0000107EnsemblGO_REF:0000107
B4galt7Ratglycosylation involved_inIBAMGI:1927169 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
B4galt7Ratnegative regulation of fibroblast proliferation involved_inISOB4GALT7 (Homo sapiens)1624291 PMID:16583246RGDPMID:16583246
B4galt7Ratprotein glycosylation involved_inIEAUniPathway:UPA003781600115GO_REF:0000041UniProtGO_REF:0000041
B4galt7Ratprotein glycosylation involved_inIEAUniRule:UR0015917531600115GO_REF:0000104UniProtGO_REF:0000104
B4galt7Ratprotein N-linked glycosylation involved_inISOB4GALT7 (Homo sapiens)1624291 PMID:24052259RGDPMID:24052259
B4galt7Ratproteoglycan biosynthetic process involved_inIBAFB:FBgn0039258 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
B4galt7Ratproteoglycan metabolic process involved_inISOB4GALT7 (Homo sapiens)1624291 PMID:16583246RGDPMID:16583246
B4galt7Ratsupramolecular fiber organization involved_inISOB4GALT7 (Homo sapiens)1624291 PMID:16583246RGDPMID:16583246
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7RatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
B4galt7RatGolgi apparatus located_inIEAUniRule:UR0015917531600115GO_REF:0000104UniProtGO_REF:0000104
B4galt7RatGolgi apparatus is_active_inIBAFB:FBgn0027538 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
B4galt7RatGolgi apparatus located_inISOB4GALT7 (Homo sapiens)1624291 PMID:10506123RGDPMID:10506123
B4galt7RatGolgi cisterna membrane located_inIEAUniRule:UR0015917531600115GO_REF:0000104UniProtGO_REF:0000104
B4galt7RatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
B4galt7Ratmembrane located_inISOB4GALT7 (Homo sapiens)1624291 PMID:10438455RGDPMID:10438455
B4galt7Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7Ratbeta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity enablesISOB4GALT7 (Homo sapiens)1624291 PMID:24052259RGDPMID:24052259
B4galt7Ratgalactosyltransferase activity enablesISOB4GALT7 (Homo sapiens)1624291 PMID:10506123 and PMID:16583246RGDPMID:10506123 and PMID:16583246
B4galt7Ratglycosyltransferase activity enablesIEAUniProtKB-KW:KW-03281600115GO_REF:0000043UniProtGO_REF:0000043
B4galt7Ratglycosyltransferase activity enablesIEAInterPro:IPR0038591600115GO_REF:0000002InterProGO_REF:0000002
B4galt7Ratmanganese ion binding enablesISOB4GALT7 (Homo sapiens)1624291 PMID:24052259RGDPMID:24052259
B4galt7Ratmetal ion binding enablesIEAUniRule:UR0015917531600115GO_REF:0000104UniProtGO_REF:0000104
B4galt7Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
B4galt7Ratprotein binding enablesISOB4GALT7 (Homo sapiens)1624291UniProtKB:A8MQ03 more ...RGDPMID:25416956 and PMID:32296183
B4galt7Rattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
B4galt7Ratxylosylprotein 4-beta-galactosyltransferase activity enablesISOB4GALT7 (Homo sapiens)1624291 PMID:10438455RGDPMID:10438455
B4galt7Ratxylosylprotein 4-beta-galactosyltransferase activity enablesIEAUniProtKB:Q8R087 and ensembl:ENSMUSP000000685321600115GO_REF:0000107EnsemblGO_REF:0000107
B4galt7Ratxylosylprotein 4-beta-galactosyltransferase activity enablesIBAFB:FBgn0039258 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
B4galt7Ratxylosylprotein 4-beta-galactosyltransferase activity enablesISOB4galt7 (Mus musculus)1624291UniProtKB:Q9UBV7 and PMID:20809901RGDPMID:20809901
1 to 13 of 13 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
B4galt7Ratchondroitin sulfate biosynthetic pathway  IEA 6907045 KEGGrno:00532
B4galt7Ratheparan sulfate biosynthetic pathway  IEA 6907045 KEGGrno:00534

1 to 9 of 9 rows
#
Reference Title
Reference Citation
1. Cloning and expression of a proteoglycan UDP-galactose:beta-xylose beta1,4-galactosyltransferase I. A seventh member of the human beta4-galactosyltransferase gene family. Almeida R, etal., J Biol Chem. 1999 Sep 10;274(37):26165-71.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
1 to 9 of 9 rows
PMID:10438455   PMID:10506123   PMID:12477932   PMID:16583246   PMID:24052259  



B4galt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,023,667 - 9,032,742 (-)NCBIGRCr8
mRatBN7.2179,018,514 - 9,027,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,018,935 - 9,027,573 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,034,025 - 9,042,619 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,564,039 - 10,572,472 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,030,417 - 9,039,008 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,549,605 - 9,558,672 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,550,028 - 9,558,634 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,657,450 - 11,666,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,059,958 - 15,068,556 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,060,083 - 15,068,555 (-)NCBI
Celera179,100,550 - 9,109,148 (-)NCBICelera
Cytogenetic Map17p14NCBI
B4GALT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,600,132 - 177,610,330 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,600,132 - 177,610,330 (+)EnsemblGRCh38hg38GRCh38
GRCh375177,027,133 - 177,037,331 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,959,778 - 176,969,937 (+)NCBINCBI36Build 36hg18NCBI36
Build 345176,959,777 - 176,969,936NCBI
Celera5171,465,093 - 171,475,318 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,950,894 - 171,957,065 (+)NCBIHuRef
CHM1_15176,459,506 - 176,469,735 (+)NCBICHM1_1
T2T-CHM13v2.05178,142,412 - 178,152,606 (+)NCBIT2T-CHM13v2.0
B4galt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,747,709 - 55,758,258 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,747,709 - 55,758,256 (+)EnsemblGRCm39 Ensembl
GRCm381355,599,896 - 55,610,443 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,599,896 - 55,610,443 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,701,472 - 55,711,315 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,609,733 - 55,619,576 (+)NCBIMGSCv36mm8
Celera1356,654,193 - 56,664,036 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
B4galt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,838,075 - 29,849,357 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,837,982 - 29,847,891 (+)NCBIChiLan1.0ChiLan1.0
B4GALT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,688,363 - 172,698,610 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,827,913 - 170,838,072 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,905,749 - 172,915,970 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,965,928 - 179,976,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,965,928 - 179,976,158 (+)Ensemblpanpan1.1panPan2
B4GALT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,497,860 - 3,507,513 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,498,153 - 3,505,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha113,640,557 - 3,649,718 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,473,619 - 3,482,780 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,470,164 - 3,483,028 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,441,378 - 3,450,306 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,520,034 - 3,528,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,763,759 - 3,772,921 (-)NCBIUU_Cfam_GSD_1.0
B4galt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,865,812 - 122,880,135 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,890,473 - 1,902,259 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,890,737 - 1,900,702 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,346,307 - 80,359,973 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,349,732 - 80,359,878 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,927,404 - 81,937,550 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,617,929 - 79,628,265 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,617,963 - 79,628,377 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,810,860 - 10,821,201 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473312,438,287 - 12,455,896 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in B4galt7
34 total Variants

Predicted Target Of
Summary Value
Count of predictions:282
Count of miRNA genes:154
Interacting mature miRNAs:179
Transcripts:ENSRNOT00000036223
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 22 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat

1 to 10 of 22 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000036223   ⟹   ENSRNOP00000029002
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,018,935 - 9,027,565 (-)Ensembl
Rnor_6.0 Ensembl179,550,028 - 9,558,624 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000083492   ⟹   ENSRNOP00000072981
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,018,935 - 9,027,573 (-)Ensembl
Rnor_6.0 Ensembl179,550,358 - 9,558,634 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119555   ⟹   ENSRNOP00000092327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,019,466 - 9,027,546 (-)Ensembl
RefSeq Acc Id: NM_001031661   ⟹   NP_001026831
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,024,088 - 9,032,686 (-)NCBI
mRatBN7.2179,018,935 - 9,027,535 (-)NCBI
Rnor_6.0179,550,026 - 9,558,624 (-)NCBI
Rnor_5.01711,657,450 - 11,666,049 (-)NCBI
RGSC_v3.41715,059,958 - 15,068,556 (-)RGD
Celera179,100,550 - 9,109,148 (-)RGD
Sequence:
RefSeq Acc Id: XM_008771501   ⟹   XP_008769723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,023,667 - 9,032,739 (-)NCBI
mRatBN7.2179,018,514 - 9,027,589 (-)NCBI
Rnor_6.0179,549,605 - 9,558,672 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095966   ⟹   XP_038951894
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,024,088 - 9,032,717 (-)NCBI
mRatBN7.2179,018,514 - 9,027,569 (-)NCBI
RefSeq Acc Id: XM_063276663   ⟹   XP_063132733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,025,165 - 9,032,742 (-)NCBI
RefSeq Acc Id: NP_001026831   ⟸   NM_001031661
- UniProtKB: Q4FZU7 (UniProtKB/TrEMBL),   F7ETN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008769723   ⟸   XM_008771501
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K4C0 (UniProtKB/TrEMBL),   F7ETN7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000029002   ⟸   ENSRNOT00000036223
Ensembl Acc Id: ENSRNOP00000072981   ⟸   ENSRNOT00000083492
RefSeq Acc Id: XP_038951894   ⟸   XM_039095966
- Peptide Label: isoform X3
Galactosyltransferase C-terminal   Galactosyltransferase N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4C0-F1-model_v2 AlphaFold A0A0G2K4C0 1-381 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700300
Promoter ID:EPDNEW_R10821
Type:initiation region
Name:B4galt7_1
Description:beta-1,4-galactosyltransferase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0179,558,654 - 9,558,714EPDNEW


1 to 29 of 29 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-10217 BioCyc
Ensembl Genes ENSRNOG00000021886 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036223 ENTREZGENE
  ENSRNOT00000036223.5 UniProtKB/TrEMBL
  ENSRNOT00000083492 ENTREZGENE
  ENSRNOT00000083492.2 UniProtKB/TrEMBL
  ENSRNOT00000119555.1 UniProtKB/TrEMBL
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7460148 IMAGE-MGC_LOAD
InterPro Galactosyl_T_2 UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report rno:364675 UniProtKB/TrEMBL
MGC_CLONE MGC:116242 IMAGE-MGC_LOAD
NCBI Gene 364675 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 7 UniProtKB/TrEMBL
  Galactosyl_T_2 UniProtKB/TrEMBL
Pfam Galactosyl_T_2 UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PhenoGen B4galt7 PhenoGen
PRINTS B14GALTRFASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000021886 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0G2K4C0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGC1_RAT UniProtKB/TrEMBL
  A6KAQ5_RAT UniProtKB/TrEMBL
  F7ETN7 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZU7 ENTREZGENE, UniProtKB/TrEMBL
1 to 29 of 29 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-29 B4galt7  beta-1,4-galactosyltransferase 7  B4galt7  xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-25 B4galt7  xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7  B4galt7  xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 B4galt7  xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)  B4galt7_predicted  xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 B4galt7_predicted  xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I) (predicted)      Symbol and Name status set to approved 70820 APPROVED