Sltm (SAFB-like, transcription modulator) - Rat Genome Database

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Gene: Sltm (SAFB-like, transcription modulator) Rattus norvegicus
Analyze
Symbol: Sltm
Name: SAFB-like, transcription modulator
RGD ID: 1307526
Description: Predicted to enable RNA binding activity. Predicted to be located in nuclear body. Orthologous to human SLTM (SAFB like transcription modulator); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,5-hexanedione; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC315792; RGD1307526; SAFB-like transcription modulator; similar to modulator of estrogen induced transcription
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8880,096,555 - 80,142,668 (+)NCBIGRCr8
mRatBN7.2871,215,995 - 71,261,821 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,216,612 - 71,261,825 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0876,977,698 - 77,022,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,977,822 - 77,022,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,059,815 - 76,105,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4875,020,876 - 75,066,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1875,079,798 - 75,085,656 (+)NCBI
Celera870,467,318 - 70,512,465 (-)NCBICelera
Cytogenetic Map8q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear body  (IEA,ISO)
nucleoplasm  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Sltm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8880,096,555 - 80,142,668 (+)NCBIGRCr8
mRatBN7.2871,215,995 - 71,261,821 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,216,612 - 71,261,825 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0876,977,698 - 77,022,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,977,822 - 77,022,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,059,815 - 76,105,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4875,020,876 - 75,066,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1875,079,798 - 75,085,656 (+)NCBI
Celera870,467,318 - 70,512,465 (-)NCBICelera
Cytogenetic Map8q24NCBI
SLTM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381558,879,050 - 58,933,679 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1558,879,050 - 58,933,679 (-)EnsemblGRCh38hg38GRCh38
GRCh371559,171,249 - 59,225,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361556,958,536 - 57,013,144 (-)NCBINCBI36Build 36hg18NCBI36
Celera1536,059,189 - 36,113,796 (-)NCBICelera
Cytogenetic Map15q22.1NCBI
HuRef1535,994,164 - 36,048,861 (-)NCBIHuRef
CHM1_11559,289,165 - 59,343,802 (-)NCBICHM1_1
T2T-CHM13v2.01556,681,092 - 56,735,731 (-)NCBIT2T-CHM13v2.0
Sltm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,449,717 - 70,499,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl970,450,036 - 70,499,516 (+)EnsemblGRCm39 Ensembl
GRCm38970,542,177 - 70,592,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,542,754 - 70,592,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv37970,390,585 - 70,440,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36970,341,942 - 70,391,396 (+)NCBIMGSCv36mm8
Celera967,759,529 - 67,808,982 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
Sltm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,691,463 - 15,736,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,691,472 - 15,748,123 (+)NCBIChiLan1.0ChiLan1.0
SLTM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,143,255 - 48,197,766 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11552,326,109 - 52,381,526 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01537,848,629 - 37,903,221 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,157,515 - 56,211,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,158,460 - 56,211,695 (-)Ensemblpanpan1.1panPan2
SLTM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13023,858,626 - 23,902,042 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3023,859,194 - 23,902,009 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3023,832,406 - 23,875,850 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,027,005 - 24,070,471 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,027,378 - 24,070,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13023,950,495 - 23,993,912 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,035,414 - 24,078,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,178,984 - 24,222,422 (-)NCBIUU_Cfam_GSD_1.0
Sltm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,190,074 - 102,234,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647120,039,081 - 20,081,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647120,038,137 - 20,082,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLTM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1113,084,008 - 113,136,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11113,085,095 - 113,140,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21125,132,697 - 125,167,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLTM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,583,671 - 24,639,455 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2624,583,699 - 24,642,460 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048116,681,827 - 116,738,424 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sltm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478113,042,831 - 13,090,493 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sltm
32 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298065Scl16Serum cholesterol level QTL 163.8blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)83085640475856404Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
1298079Activ2Activity QTL 29.50.000001voluntary movement trait (VT:0003491)rearing measurement (CMO:0001515)84186687686866876Rat
70161Bp62Blood pressure QTL 622.90.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)84269268490165460Rat
1578765Klgr1Kidney lesion grade QTL 13.30.0001kidney morphology trait (VT:0002135)organ lesion measurement (CMO:0000677)830848154101699754Rat
1582222Epfw2Epididymal fat weight QTL 23.20.0005epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)83173772976737729Rat
61464Niddm11Non-insulin dependent diabetes mellitus QTL 113.10.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83558203280582032Rat
4889938Bss89Bone structure and strength QTL 893.8tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)85009524982460899Rat
1578755Pur5Proteinuria QTL 53.30.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)830848154101699754Rat
1300146Rf17Renal function QTL 172.9renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)82824291273242912Rat
8662823Vetf5Vascular elastic tissue fragility QTL 51.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)82824291299525068Rat
2313088Bss75Bone structure and strength QTL 753.10.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)83084815482460899Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1358896Bp262Blood pressure QTL 2622.89arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)82720571599103503Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
737824Hcar10Hepatocarcinoma resistance QTL 102.9liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)84071306682925667Rat
1331769Rf39Renal function QTL 393.871urine output (VT:0003620)timed urine volume (CMO:0000260)84186687675097878Rat
61358Bp39Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)83555193880551938Rat
1358906Bp253Blood pressure QTL 25340.0004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)84071306693965294Rat
1358907Cm40Cardiac mass QTL 401.89heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)82720571599103503Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)830848259105647037Rat
1582254Kidm31Kidney mass QTL 313kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)85423764485365202Rat
10402857Bp380Blood pressure QTL 3800.95arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
1358892Kidm26Kidney mass QTL 263.69kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)82720571599103503Rat
5684973Bss100Bone structure and strength QTL 1004.7tibia area (VT:1000281)tibia area measurement (CMO:0001382)85009524982460899Rat
1582243Bw66Body weight QTL 663.40.0048body mass (VT:0001259)body weight (CMO:0000012)85423764485365202Rat
2313057Bss76Bone structure and strength QTL 7630.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)83084815482460899Rat
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
2313067Bss77Bone structure and strength QTL 773.10.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)83084815482460899Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat
12879882Am8Aortic mass QTL 80.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)84329616998968765Rat
12879883Kidm65Kidney mass QTL 650.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)84329616998968765Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
2313086Bss60Bone structure and strength QTL 604.10.0001tibia length (VT:0004357)tibia length (CMO:0000450)85009524982460899Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
2293697Bmd39Bone mineral density QTL 39femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)85404374498968765Rat
1331837Bw23Body weight QTL 234.190.00007body mass (VT:0001259)body weight (CMO:0000012)84653172299083736Rat
1331838Niddm61Non-insulin dependent diabetes mellitus QTL 613.530.0004blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)83646953599083736Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
2303570Gluco48Glucose level QTL 482blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)84980583194805831Rat
2313046Bss78Bone structure and strength QTL 783.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)83084815482460899Rat
2301402Bp316Blood pressure QTL 3160.005arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)85396876598968765Rat
631664Hcar3Hepatocarcinoma resistance QTL 32.90.0005liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)85423764499103503Rat

Markers in Region
RH143549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2871,250,055 - 71,251,134 (+)MAPPERmRatBN7.2
Rnor_6.0877,011,084 - 77,012,162NCBIRnor6.0
Rnor_5.0876,070,500 - 76,071,578UniSTSRnor5.0
RGSC_v3.4875,054,847 - 75,055,925UniSTSRGSC3.4
Celera870,478,004 - 70,479,082UniSTS
RH 3.4 Map21191.69UniSTS
Cytogenetic Map8q24UniSTS
D11Bhm134  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2871,225,634 - 71,226,179 (+)MAPPERmRatBN7.2
Rnor_6.0876,986,663 - 76,987,207NCBIRnor6.0
Rnor_5.0876,095,455 - 76,095,999UniSTSRnor5.0
RGSC_v3.4875,029,720 - 75,030,264UniSTSRGSC3.4
Celera870,502,960 - 70,503,504UniSTS
Cytogenetic Map8q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001017460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_056984532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_236381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_009637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_348606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_602207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_602208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_602209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC092633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000090268   ⟹   ENSRNOP00000074807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,216,813 - 71,261,796 (+)Ensembl
Rnor_6.0 Ensembl876,977,822 - 77,022,837 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113725   ⟹   ENSRNOP00000084773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,216,612 - 71,261,825 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117345   ⟹   ENSRNOP00000089853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,216,813 - 71,261,796 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118420   ⟹   ENSRNOP00000087086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl871,216,813 - 71,261,796 (+)Ensembl
RefSeq Acc Id: XM_056984525   ⟹   XP_056840505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,075 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984526   ⟹   XP_056840506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,079 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984527   ⟹   XP_056840507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,075 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984528   ⟹   XP_056840508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,626 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984529   ⟹   XP_056840509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,075 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984530   ⟹   XP_056840510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
mRatBN7.2871,216,076 - 71,261,821 (+)NCBI
RefSeq Acc Id: XM_056984531   ⟹   XP_056840511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,136,805 (+)NCBI
mRatBN7.2871,216,005 - 71,255,948 (+)NCBI
RefSeq Acc Id: XM_056984532   ⟹   XP_056840512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,136,809 (+)NCBI
mRatBN7.2871,215,995 - 71,255,952 (+)NCBI
RefSeq Acc Id: XM_063266421   ⟹   XP_063122491
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
RefSeq Acc Id: XM_063266422   ⟹   XP_063122492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,142,668 (+)NCBI
RefSeq Acc Id: XM_063266423   ⟹   XP_063122493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8880,096,555 - 80,136,993 (+)NCBI
Ensembl Acc Id: ENSRNOP00000074807   ⟸   ENSRNOT00000090268
Ensembl Acc Id: ENSRNOP00000084773   ⟸   ENSRNOT00000113725
Ensembl Acc Id: ENSRNOP00000087086   ⟸   ENSRNOT00000118420
Ensembl Acc Id: ENSRNOP00000089853   ⟸   ENSRNOT00000117345
RefSeq Acc Id: XP_056840512   ⟸   XM_056984532
- Peptide Label: isoform X10
RefSeq Acc Id: XP_056840511   ⟸   XM_056984531
- Peptide Label: isoform X9
RefSeq Acc Id: XP_056840505   ⟸   XM_056984525
- Peptide Label: isoform X1
RefSeq Acc Id: XP_056840507   ⟸   XM_056984527
- Peptide Label: isoform X3
RefSeq Acc Id: XP_056840509   ⟸   XM_056984529
- Peptide Label: isoform X5
RefSeq Acc Id: XP_056840510   ⟸   XM_056984530
- Peptide Label: isoform X7
RefSeq Acc Id: XP_056840506   ⟸   XM_056984526
- Peptide Label: isoform X2
RefSeq Acc Id: XP_056840508   ⟸   XM_056984528
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063122491   ⟸   XM_063266421
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AB75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122492   ⟸   XM_063266422
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063122493   ⟸   XM_063266423
- Peptide Label: isoform X10
Protein Domains
RRM   SAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K904-F1-model_v2 AlphaFold A0A0G2K904 1-1034 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696107
Promoter ID:EPDNEW_R6630
Type:initiation region
Name:Sltm_1
Description:SAFB-like, transcription modulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0876,977,826 - 76,977,886EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307526 AgrOrtholog
BioCyc Gene G2FUF-29914 BioCyc
Ensembl Genes ENSRNOG00000054446 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000090268.2 UniProtKB/TrEMBL
  ENSRNOT00000113725.1 UniProtKB/TrEMBL
  ENSRNOT00000117345.1 UniProtKB/TrEMBL
  ENSRNOT00000118420.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.720.30 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314918 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  SAF_Modulators UniProtKB/TrEMBL
  SAP_dom UniProtKB/TrEMBL
  SAP_dom_sf UniProtKB/TrEMBL
MGC_CLONE MGC:109335 IMAGE-MGC_LOAD
NCBI Gene Sltm ENTREZGENE
PANTHER PTHR15683:SF5 UniProtKB/TrEMBL
  SCAFFOLD ATTACHMENT FACTOR B-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
PhenoGen Sltm PhenoGen
PROSITE RRM UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000054446 RatGTEx
SMART RRM UniProtKB/TrEMBL
  SAP UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF68906 UniProtKB/TrEMBL
UniProt A0A0G2K904 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXX7_RAT UniProtKB/TrEMBL
  A0A8I6A3K4_RAT UniProtKB/TrEMBL
  A0A8I6AB75 ENTREZGENE, UniProtKB/TrEMBL
  A6KES8_RAT UniProtKB/TrEMBL
  A6KET0 ENTREZGENE, UniProtKB/TrEMBL
  A6KET3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Sltm  SAFB-like, transcription modulator  RGD1307526  similar to modulator of estrogen induced transcription  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1307526  similar to modulator of estrogen induced transcription  RGD1307526_predicted  similar to modulator of estrogen induced transcription (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1307526_predicted  similar to modulator of estrogen induced transcription (predicted)  LOC315792_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315792_predicted  similar to modulator of estrogen induced transcription (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL