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Gene: Safb (scaffold attachment factor B) Rattus norvegicus
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Symbol: Safb
Name: scaffold attachment factor B
RGD ID: 620613
Description: Exhibits sequence-specific DNA binding activity. Involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Localizes to nucleus. Orthologous to human SAFB (scaffold attachment factor B); INTERACTS WITH 3-chloropropane-1,2-diol; ammonium chloride; phenethyl isothiocyanate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: SAF-B; SAF-B1; scaffold attachment factor B1
Orthologs:
Homo sapiens (human) : SAFB (scaffold attachment factor B)  HGNC  Alliance
Mus musculus (house mouse) : Safb (scaffold attachment factor B)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Safb (scaffold attachment factor B)
Pan paniscus (bonobo/pygmy chimpanzee) : SAFB (scaffold attachment factor B)
Canis lupus familiaris (dog) : SAFB (scaffold attachment factor B)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Safb (scaffold attachment factor B)
Sus scrofa (pig) : SAFB (scaffold attachment factor B)
Chlorocebus sabaeus (African green monkey) : SAFB (scaffold attachment factor B)
Heterocephalus glaber (naked mole-rat) : Safb (scaffold attachment factor B)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0910,450,216 - 10,471,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,450,205 - 10,471,176 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,447,161 - 9,468,030 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera97,075,428 - 7,096,066 (-)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Safb
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 620613
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.