Sltm (SAFB like transcription modulator) - Rat Genome Database

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Gene: Sltm (SAFB like transcription modulator) Chinchilla lanigera
Analyze
Symbol: Sltm
Name: SAFB like transcription modulator
RGD ID: 8730210
Description: ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SAFB-like transcription modulator; SAFB-like, transcription modulator
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,691,463 - 15,736,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,691,472 - 15,748,123 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sltm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,691,463 - 15,736,709 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,691,472 - 15,748,123 (+)NCBIChiLan1.0ChiLan1.0
SLTM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381558,879,050 - 58,933,679 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1558,879,050 - 58,933,679 (-)EnsemblGRCh38hg38GRCh38
GRCh371559,171,249 - 59,225,878 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361556,958,536 - 57,013,144 (-)NCBINCBI36Build 36hg18NCBI36
Celera1536,059,189 - 36,113,796 (-)NCBICelera
Cytogenetic Map15q22.1NCBI
HuRef1535,994,164 - 36,048,861 (-)NCBIHuRef
CHM1_11559,289,165 - 59,343,802 (-)NCBICHM1_1
T2T-CHM13v2.01556,681,092 - 56,735,731 (-)NCBIT2T-CHM13v2.0
Sltm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,449,717 - 70,499,519 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl970,450,036 - 70,499,516 (+)EnsemblGRCm39 Ensembl
GRCm38970,542,177 - 70,592,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,542,754 - 70,592,234 (+)EnsemblGRCm38mm10GRCm38
MGSCv37970,390,585 - 70,440,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36970,341,942 - 70,391,396 (+)NCBIMGSCv36mm8
Celera967,759,529 - 67,808,982 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map939.53NCBI
Sltm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8880,096,555 - 80,142,668 (+)NCBIGRCr8
mRatBN7.2871,215,995 - 71,261,821 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl871,216,612 - 71,261,825 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0876,977,698 - 77,022,847 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl876,977,822 - 77,022,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0876,059,815 - 76,105,645 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4875,020,876 - 75,066,611 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1875,079,798 - 75,085,656 (+)NCBI
Celera870,467,318 - 70,512,465 (-)NCBICelera
Cytogenetic Map8q24NCBI
SLTM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21648,143,255 - 48,197,766 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11552,326,109 - 52,381,526 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01537,848,629 - 37,903,221 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11556,157,515 - 56,211,801 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,158,460 - 56,211,695 (-)Ensemblpanpan1.1panPan2
SLTM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13023,858,626 - 23,902,042 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3023,859,194 - 23,902,009 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3023,832,406 - 23,875,850 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03024,027,005 - 24,070,471 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3024,027,378 - 24,070,477 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13023,950,495 - 23,993,912 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03024,035,414 - 24,078,899 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03024,178,984 - 24,222,422 (-)NCBIUU_Cfam_GSD_1.0
Sltm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,190,074 - 102,234,347 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647120,039,081 - 20,081,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647120,038,137 - 20,082,410 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLTM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1113,084,008 - 113,136,599 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11113,085,095 - 113,140,604 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21125,132,697 - 125,167,732 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLTM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,583,671 - 24,639,455 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2624,583,699 - 24,642,460 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048116,681,827 - 116,738,424 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sltm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478113,042,831 - 13,090,493 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010489   ⟹   ENSCLAP00000010359
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545015,691,463 - 15,736,709 (+)Ensembl
RefSeq Acc Id: XM_013518874   ⟹   XP_013374328
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545015,691,472 - 15,748,123 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374328 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010359
  ENSCLAP00000010359.1
Reference Protein Sequences
RefSeq Acc Id: XP_013374328   ⟸   XM_013518874
- UniProtKB: A0A8C2VBL3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010359   ⟸   ENSCLAT00000010489
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007160 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010489 ENTREZGENE
  ENSCLAT00000010489.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene Sltm ENTREZGENE
PANTHER PTHR15683:SF5 UniProtKB/TrEMBL
  SCAFFOLD ATTACHMENT FACTOR B-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C2VBL3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Sltm  SAFB like transcription modulator    SAFB-like, transcription modulator  Symbol and/or name change 5135510 APPROVED