Chac1 (ChaC glutathione-specific gamma-glutamylcyclotransferase 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Chac1 (ChaC glutathione-specific gamma-glutamylcyclotransferase 1) Rattus norvegicus
Analyze
Symbol: Chac1
Name: ChaC glutathione-specific gamma-glutamylcyclotransferase 1
RGD ID: 1307153
Description: Predicted to enable Notch binding activity; gamma-glutamylcyclotransferase activity; and glutathione specific gamma-glutamylcyclotransferase activity. Predicted to be involved in several processes, including glutathione catabolic process; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; and negative regulation of Notch signaling pathway. Predicted to be located in cytosol and trans-Golgi network. Predicted to be active in cytoplasm. Orthologous to human CHAC1 (ChaC glutathione specific gamma-glutamylcyclotransferase 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: blocks Notch protein; botch; cation transport regulator homolog 1; cation transport regulator-like protein 1; ChaC, cation transport regulator homolog 1; ChaC, cation transport regulator homolog 1 (E. coli); ChaC, cation transport regulator-like 1; ChaC, cation transport regulator-like 1 (E. coli) ; gamma-GCG 1; glutathione-specific gamma-glutamylcyclotransferase 1; LOC362196; neuroprotective protein 7; RGD1307153; similar to RIKEN cDNA 1810008K03
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,342,302 - 106,345,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,342,302 - 106,345,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,015,555 - 110,018,821 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,611,097 - 118,614,362 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,271,480 - 116,274,744 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,160,205 - 111,163,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,160,205 - 111,163,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,711,150 - 117,714,352 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,869,762 - 105,873,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,766,060 - 105,769,420 (+)NCBI
Celera3105,255,519 - 105,258,707 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-diaminotoluene  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
aldehydo-D-glucose  (EXP)
Alisol A  (EXP)
Alisol B  (EXP)
Alisol C 23-acetate  (EXP)
amiodarone  (ISO)
amphotericin B  (ISO)
antimycin A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
avobenzone  (ISO)
benzene-1,2,4-triol  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
bromobenzene  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
crotonaldehyde  (ISO)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
D-glucose  (EXP)
deguelin  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enniatin  (ISO)
entinostat  (ISO)
erastin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
fenamidone  (ISO)
fenpyroximate  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
furan  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glucose  (EXP)
hydroquinone  (ISO)
indometacin  (ISO)
iron dichloride  (ISO)
isoprenaline  (ISO)
L-methionine  (ISO)
Licochalcone B  (ISO)
lipopolysaccharide  (ISO)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
mercury(0)  (ISO)
methamphetamine  (EXP)
methapyrilene  (EXP)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pinostrobin  (ISO)
pirinixic acid  (ISO)
potassium bromate  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
pyrimidifen  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sinapic acid  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
Soman  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tauroursodeoxycholic acid  (ISO)
tebufenpyrad  (ISO)
testosterone  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
xylitol  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)
cytosol  (ISO)
trans-Golgi network  (ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19109178   PMID:21124846   PMID:22445366   PMID:31377404  


Genomics

Comparative Map Data
Chac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23106,342,302 - 106,345,526 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,342,302 - 106,345,526 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,015,555 - 110,018,821 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,611,097 - 118,614,362 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,271,480 - 116,274,744 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,160,205 - 111,163,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,160,205 - 111,163,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,711,150 - 117,714,352 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43105,869,762 - 105,873,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13105,766,060 - 105,769,420 (+)NCBI
Celera3105,255,519 - 105,258,707 (+)NCBICelera
Cytogenetic Map3q35NCBI
CHAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,953,471 - 40,956,512 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,952,962 - 40,956,512 (+)EnsemblGRCh38hg38GRCh38
GRCh371541,245,669 - 41,248,710 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,032,983 - 39,036,002 (+)NCBINCBI36Build 36hg18NCBI36
Celera1518,013,509 - 18,016,592 (+)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,094,116 - 18,097,199 (+)NCBIHuRef
CHM1_11541,363,562 - 41,366,645 (+)NCBICHM1_1
T2T-CHM13v2.01538,748,040 - 38,762,447 (+)NCBIT2T-CHM13v2.0
Chac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,181,723 - 119,184,807 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,181,710 - 119,184,862 (+)EnsemblGRCm39 Ensembl
GRCm382119,351,242 - 119,354,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,351,229 - 119,354,381 (+)EnsemblGRCm38mm10GRCm38
MGSCv372119,176,978 - 119,180,062 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,042,697 - 119,045,822 (+)NCBIMGSCv36mm8
Celera2120,503,185 - 120,506,253 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Chac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,828,482 - 7,832,391 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554167,828,917 - 7,831,368 (+)NCBIChiLan1.0ChiLan1.0
CHAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11534,346,976 - 34,350,140 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,895,554 - 19,898,672 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,145,730 - 38,148,698 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,145,730 - 38,148,698 (+)Ensemblpanpan1.1panPan2
CHAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha308,135,431 - 8,137,791 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,209,426 - 8,211,786 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,209,173 - 8,211,784 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,132,762 - 8,135,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,239,267 - 8,241,625 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,370,410 - 8,372,770 (+)NCBIUU_Cfam_GSD_1.0
Chac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,496,154 - 86,498,845 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,344,053 - 4,346,913 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,344,234 - 4,346,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,360,514 - 130,363,308 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,360,510 - 130,363,332 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,522,842 - 145,525,941 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,038,751 - 42,041,836 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,038,528 - 42,041,760 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604898,943,403 - 98,946,939 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,201,147 - 8,203,836 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,201,296 - 8,203,737 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Chac1
10 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:98
Count of miRNA genes:78
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000019392
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3102200529115665732Rat

Markers in Region
RH140218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23106,344,965 - 106,345,247 (+)MAPPERmRatBN7.2
Rnor_6.03111,162,865 - 111,163,146NCBIRnor6.0
Rnor_5.03117,713,792 - 117,714,073UniSTSRnor5.0
RGSC_v3.43105,872,758 - 105,873,039UniSTSRGSC3.4
Celera3105,258,147 - 105,258,428UniSTS
RH 3.4 Map3913.1UniSTS
Cytogenetic Map3q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 30 1
Low 3 22 44 40 13 40 7 7 44 28 35 11 7
Below cutoff 21 13 1 6 1 7 5

Sequence


RefSeq Acc Id: ENSRNOT00000019392   ⟹   ENSRNOP00000019392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3106,342,302 - 106,345,526 (+)Ensembl
Rnor_6.0 Ensembl3111,160,205 - 111,163,425 (+)Ensembl
RefSeq Acc Id: NM_001173437   ⟹   NP_001166908
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23106,342,302 - 106,345,526 (+)NCBI
Rnor_6.03111,160,205 - 111,163,425 (+)NCBI
Rnor_5.03117,711,150 - 117,714,352 (+)NCBI
Celera3105,255,519 - 105,258,707 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001166908 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ABX10438 (Get FASTA)   NCBI Sequence Viewer  
  B3STU3 (Get FASTA)   NCBI Sequence Viewer  
  EDL79903 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019392
  ENSRNOP00000019392.4
  ENSRNOP00055003771
  ENSRNOP00060037894
  ENSRNOP00065033307
RefSeq Acc Id: NP_001166908   ⟸   NM_001173437
- UniProtKB: B3STU3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000019392   ⟸   ENSRNOT00000019392

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B3STU3-F1-model_v2 AlphaFold B3STU3 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692327
Promoter ID:EPDNEW_R2851
Type:multiple initiation site
Name:Chac1_1
Description:ChaC glutathione-specific gamma-glutamylcyclotransferase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03111,160,278 - 111,160,338EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307153 AgrOrtholog
BioCyc Gene G2FUF-48205 BioCyc
BioCyc Pathway PWY-7942 [5-oxo-L-proline metabolism] BioCyc
BioCyc Pathway Image PWY-7942 BioCyc
Ensembl Genes ENSRNOG00000014387 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055003272 UniProtKB/Swiss-Prot
  ENSRNOG00060026373 UniProtKB/Swiss-Prot
  ENSRNOG00065023817 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019392 ENTREZGENE
  ENSRNOT00000019392.5 UniProtKB/Swiss-Prot
  ENSRNOT00055005074 UniProtKB/Swiss-Prot
  ENSRNOT00060045661 UniProtKB/Swiss-Prot
  ENSRNOT00065040821 UniProtKB/Swiss-Prot
Gene3D-CATH Gamma-glutamyl cyclotransferase-like UniProtKB/Swiss-Prot
InterPro ChaC UniProtKB/Swiss-Prot
  GGCT-like UniProtKB/Swiss-Prot
  GGCT-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:362196 UniProtKB/Swiss-Prot
NCBI Gene 362196 ENTREZGENE
PANTHER GLUTATHIONE-SPECIFIC GAMMA-GLUTAMYLCYCLOTRANSFERASE 1 UniProtKB/Swiss-Prot
  PTHR12192 UniProtKB/Swiss-Prot
Pfam ChaC UniProtKB/Swiss-Prot
PhenoGen Chac1 PhenoGen
RatGTEx ENSRNOG00000014387 RatGTEx
  ENSRNOG00055003272 RatGTEx
  ENSRNOG00060026373 RatGTEx
  ENSRNOG00065023817 RatGTEx
Superfamily-SCOP SSF110857 UniProtKB/Swiss-Prot
UniProt B3STU3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-12-01 Chac1  ChaC glutathione-specific gamma-glutamylcyclotransferase 1  Chac1  ChaC, cation transport regulator homolog 1 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Chac1  ChaC, cation transport regulator homolog 1 (E. coli)  Chac1  ChaC, cation transport regulator-like 1 (E. coli)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Chac1  ChaC, cation transport regulator-like 1 (E. coli)   Chac1_predicted  ChaC, cation transport regulator-like 1 (E. coli) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Chac1_predicted  ChaC, cation transport regulator-like 1 (E. coli) (predicted)  RGD1307153_predicted  similar to RIKEN cDNA 1810008K03 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1307153_predicted  similar to RIKEN cDNA 1810008K03 (predicted)  LOC362196_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362196_predicted  similar to RIKEN cDNA 1810008K03 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL