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Gene: 6430548M08Rikl (RIKEN cDNA 6430548M08 gene like) Rattus norvegicus

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Symbol:

6430548M08Rikl

Name:

RIKEN cDNA 6430548M08 gene like

RGD ID:

1304884

Description:

Orthologous to human KIAA0513 (KIAA0513); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC307907; Kiaa0513; LOC307907; RGD1304884; similar to RIKEN cDNA 6430548M08; uncharacterized protein KIAA0513 homolog; uncharacterized protein LOC307907

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	KIAA0513 (KIAA0513)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	6430548M08Rik (RIKEN cDNA 6430548M08 gene)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Kiaa0513 (KIAA0513 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	KIAA0513 (KIAA0513 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	KIAA0513 (KIAA0513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Kiaa0513 (KIAA0513 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	KIAA0513 (KIAA0513)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	KIAA0513 (KIAA0513 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Kiaa0513 (KIAA0513 ortholog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	6430548M08Rik (RIKEN cDNA 6430548M08 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	KIAA0513	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:91860	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG17378	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	kiaa0513	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	65,076,626 - 65,125,185 (+)	NCBI		GRCr8
mRatBN7.2	19	48,168,651 - 48,216,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	48,198,209 - 48,216,575 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,992,553 - 55,009,060 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	55,673,287 - 55,689,794 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,886,787 - 57,903,300 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	52,763,352 - 53,742,184 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	53,723,822 - 53,740,329 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	64,452,679 - 64,471,041 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	50,465,554 - 50,482,061 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	50,441,370 - 50,488,797 (+)	NCBI
Celera	19	47,454,287 - 47,470,794 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
6430548M08Rikl	Rat	persistent fetal circulation syndrome		ISO	KIAA0513 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital alveolar capillary dysplasia	ClinVar
6430548M08Rikl	Rat	schizophrenia		ISO	KIAA0513 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106 and PMID:30208311

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
6430548M08Rikl	Rat	2,2',4,4'-Tetrabromodiphenyl ether	affects expression	ISO	6430548M08Rik (Mus musculus)	6480464	2 more ...	CTD	PMID:30294300
6430548M08Rikl	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:33387578
6430548M08Rikl	Rat	2-hydroxypropanoic acid	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of KIAA0513 mRNA	CTD	PMID:30851411
6430548M08Rikl	Rat	2-palmitoylglycerol	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of KIAA0513 mRNA	CTD	PMID:37199045
6430548M08Rikl	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of 6430548M08RIKL mRNA	CTD	PMID:24780913
6430548M08Rikl	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:31881176
6430548M08Rikl	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:28959563
6430548M08Rikl	Rat	aflatoxin B1	decreases methylation	ISO	KIAA0513 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of KIAA0513 intron	CTD	PMID:30157460
6430548M08Rikl	Rat	all-trans-retinoic acid	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Tretinoin results in increased expression of KIAA0513 mRNA	CTD	PMID:23830798 and PMID:33167477
6430548M08Rikl	Rat	arsane	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	arsenic atom	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	atrazine	increases expression	EXP		6480464	Atrazine results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:36841081
6430548M08Rikl	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of 6430548M08RIKL gene	CTD	PMID:35440735
6430548M08Rikl	Rat	benzo[a]pyrene	affects methylation	ISO	KIAA0513 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of KIAA0513 3' UTR and Benzo(a)pyrene affects the methylation of KIAA0513 5' UTR	CTD	PMID:27901495
6430548M08Rikl	Rat	benzo[a]pyrene	decreases methylation	ISO	KIAA0513 (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of KIAA0513 promoter	CTD	PMID:27901495
6430548M08Rikl	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of 6430548M08RIKL mRNA and bisphenol A results in decreased expression of KIAA0513 mRNA	CTD	PMID:25181051 more ...
6430548M08Rikl	Rat	bisphenol A	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	bisphenol A results in increased expression of KIAA0513 mRNA	CTD	PMID:27685785 and PMID:29275510
6430548M08Rikl	Rat	Brodifacoum	increases expression	EXP		6480464	bromfenacoum results in increased expression of 6430548M08RIKL protein	CTD	PMID:28903499
6430548M08Rikl	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of 6430548M08RIKL mRNA	CTD	PMID:33453195
6430548M08Rikl	Rat	calcitriol	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Calcitriol results in increased expression of KIAA0513 mRNA	CTD	PMID:21592394
6430548M08Rikl	Rat	calcitriol	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Calcitriol results in decreased expression of KIAA0513 mRNA	CTD	PMID:26485663
6430548M08Rikl	Rat	calcitriol	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[Testosterone co-treated with Calcitriol] results in increased expression of KIAA0513 mRNA	CTD	PMID:21592394
6430548M08Rikl	Rat	copper(II) sulfate	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Copper Sulfate results in increased expression of KIAA0513 mRNA	CTD	PMID:19549813
6430548M08Rikl	Rat	coumestrol	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of KIAA0513 mRNA	CTD	PMID:19167446
6430548M08Rikl	Rat	coumestrol	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Coumestrol results in decreased expression of KIAA0513 mRNA	CTD	PMID:19167446
6430548M08Rikl	Rat	cyclosporin A	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Cyclosporine results in increased expression of KIAA0513 mRNA	CTD	PMID:20106945
6430548M08Rikl	Rat	dibutyl phthalate	decreases expression	EXP		6480464	Dibutyl Phthalate results in decreased expression of 6430548M08RIKL mRNA	CTD	PMID:21266533
6430548M08Rikl	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:29391264
6430548M08Rikl	Rat	Enterolactone	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[Coumestrol co-treated with 2 and 3-bis(3'-hydroxybenzyl)butyrolactone] results in decreased expression of KIAA0513 mRNA	CTD	PMID:19167446
6430548M08Rikl	Rat	ethanol	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Ethanol results in increased expression of KIAA0513 mRNA	CTD	PMID:28986285
6430548M08Rikl	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:33387578
6430548M08Rikl	Rat	glycidyl methacrylate	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	glycidyl methacrylate results in increased expression of KIAA0513 protein	CTD	PMID:36641056
6430548M08Rikl	Rat	hydrogen peroxide	affects expression	ISO	KIAA0513 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of KIAA0513 mRNA	CTD	PMID:20044591
6430548M08Rikl	Rat	lipopolysaccharide	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of KIAA0513 mRNA	CTD	PMID:35811015
6430548M08Rikl	Rat	lipopolysaccharide	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Lipopolysaccharides results in decreased expression of KIAA0513 mRNA	CTD	PMID:35811015
6430548M08Rikl	Rat	manganese atom	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	manganese(0)	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	manganese(II) chloride	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of 6430548M08RIKL gene	CTD	PMID:35440735
6430548M08Rikl	Rat	N-Nitrosopyrrolidine	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	N-Nitrosopyrrolidine results in increased expression of KIAA0513 mRNA	CTD	PMID:32234424
6430548M08Rikl	Rat	paracetamol	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Acetaminophen results in increased expression of KIAA0513 mRNA	CTD	PMID:22230336 more ...
6430548M08Rikl	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:33387578
6430548M08Rikl	Rat	phenethyl isothiocyanate	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	phenethyl isothiocyanate results in increased expression of KIAA0513 mRNA	CTD	PMID:26678675
6430548M08Rikl	Rat	rac-lactic acid	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Lactic Acid results in decreased expression of KIAA0513 mRNA	CTD	PMID:30851411
6430548M08Rikl	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine affects the susceptibility to Lipopolysaccharides] which results in increased expression of KIAA0513 mRNA	CTD	PMID:35811015
6430548M08Rikl	Rat	silicon dioxide	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Silicon Dioxide analog results in decreased expression of KIAA0513 mRNA	CTD	PMID:25895662
6430548M08Rikl	Rat	sodium arsenite	affects methylation	ISO	KIAA0513 (Homo sapiens)	6480464	sodium arsenite affects the methylation of KIAA0513 gene	CTD	PMID:28589171
6430548M08Rikl	Rat	sodium arsenite	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in decreased expression of KIAA0513 mRNA	CTD	PMID:39836092
6430548M08Rikl	Rat	sulforaphane	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	sulforaphane results in decreased expression of KIAA0513 mRNA	CTD	PMID:31838189
6430548M08Rikl	Rat	sunitinib	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Sunitinib results in increased expression of KIAA0513 mRNA	CTD	PMID:31533062
6430548M08Rikl	Rat	temozolomide	decreases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Temozolomide results in decreased expression of KIAA0513 mRNA	CTD	PMID:31758290
6430548M08Rikl	Rat	testosterone	multiple interactions	ISO	KIAA0513 (Homo sapiens)	6480464	[Testosterone co-treated with Calcitriol] results in increased expression of KIAA0513 mRNA	CTD	PMID:21592394
6430548M08Rikl	Rat	testosterone	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Testosterone results in increased expression of KIAA0513 mRNA	CTD	PMID:21592394
6430548M08Rikl	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:34492290
6430548M08Rikl	Rat	thiram	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Thiram results in increased expression of KIAA0513 mRNA	CTD	PMID:38568856
6430548M08Rikl	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of 6430548M08RIKL mRNA	CTD	PMID:33387578
6430548M08Rikl	Rat	triphenyl phosphate	affects expression	ISO	KIAA0513 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of KIAA0513 mRNA	CTD	PMID:37042841
6430548M08Rikl	Rat	valproic acid	increases expression	ISO	KIAA0513 (Homo sapiens)	6480464	Valproic Acid results in increased expression of KIAA0513 mRNA	CTD	PMID:19101580
6430548M08Rikl	Rat	valproic acid	affects expression	ISO	KIAA0513 (Homo sapiens)	6480464	Valproic Acid affects the expression of KIAA0513 mRNA	CTD	PMID:25979313
6430548M08Rikl	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of 6430548M08RIKL mRNA	CTD	PMID:23034163

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:17010949

6430548M08Rikl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	65,076,626 - 65,125,185 (+)	NCBI		GRCr8
mRatBN7.2	19	48,168,651 - 48,216,571 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	48,198,209 - 48,216,575 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	54,992,553 - 55,009,060 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	55,673,287 - 55,689,794 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	57,886,787 - 57,903,300 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	52,763,352 - 53,742,184 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	53,723,822 - 53,740,329 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	64,452,679 - 64,471,041 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	50,465,554 - 50,482,061 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	50,441,370 - 50,488,797 (+)	NCBI
Celera	19	47,454,287 - 47,470,794 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

KIAA0513
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	85,027,795 - 85,094,230 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	85,027,782 - 85,094,230 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	85,061,401 - 85,127,836 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	83,618,911 - 83,685,337 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	69,363,621 - 69,430,043 (+)	NCBI		Celera
Cytogenetic Map	16	q24.1	NCBI
HuRef	16	70,814,038 - 70,880,098 (+)	NCBI		HuRef
CHM1_1	16	86,472,945 - 86,539,364 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	91,094,420 - 91,160,858 (+)	NCBI		T2T-CHM13v2.0

6430548M08Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	120,840,891 - 120,892,046 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	120,840,891 - 120,892,045 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	120,114,152 - 120,165,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	120,114,152 - 120,165,306 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	122,638,052 - 122,689,207 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	123,031,206 - 123,049,395 (+)	NCBI		MGSCv36	mm8
Celera	8	124,334,610 - 124,385,877 (+)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	68.99	NCBI

Kiaa0513
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955541	437,061 - 476,122 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955541	437,106 - 476,131 (+)	NCBI	ChiLan1.0	ChiLan1.0

KIAA0513
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	94,780,103 - 94,846,352 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	100,697,192 - 100,763,520 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	65,697,578 - 65,763,822 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	85,035,898 - 85,102,525 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	85,035,898 - 85,096,623 (+)	Ensembl	panpan1.1		panPan2

KIAA0513
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	67,481,098 - 67,544,078 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	67,474,507 - 67,544,681 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	67,496,910 - 67,557,706 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	67,714,799 - 67,775,618 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	67,709,410 - 67,775,611 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	67,730,790 - 67,791,582 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	67,565,267 - 67,625,996 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	67,980,043 - 68,040,853 (-)	NCBI		UU_Cfam_GSD_1.0

Kiaa0513
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	27,360,087 - 27,413,488 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936641	3,113,634 - 3,132,062 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936641	3,113,634 - 3,167,019 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KIAA0513
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	3,724,785 - 3,779,924 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	3,724,784 - 3,786,285 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	4,158,815 - 4,206,363 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KIAA0513
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	70,438,139 - 70,502,918 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	70,438,150 - 70,499,848 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	5,241,257 - 5,306,169 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kiaa0513
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	1,751,381 - 1,798,050 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	1,751,451 - 1,797,526 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in 6430548M08Rikl
184 total Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
19	64453394	64453395	G	A	snv	HWY/Slc (KyushuU)	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
19	53029362	53029363	A	C	snv	ACI/EurMcwi (MCW), WKY/N (2020), COP/CrCrl (MCW & UW), WKY/NCrl (2019), PVG/Seac (2019), MR/N (2020), M520/N (2020), M520/NRrrcMcwi (2019), LEXF4/Stm (2020), FHH/EurMcwi (MCW), FHL/EurMcwi (MCW), SBN/Ygl (MCW), CDR, CDS, FHL/EurMcwi (RGD), ACI/EurMcwi (RGD), F344/NCrl (RGD), FHH/EurMcwi (RGD), SBN/Ygl (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF3/Stm (2020)	View more Information
19	53642620	53642621	T	C	snv	SR/JrHsd (MCW), WKY/N (MCW), F344/NRrrc (MCW), FHL/EurMcwi (MCW), SS/JrHsdMcwi (MCW), FHH/EurMcwi (MCW), GH/OmrMcwi (MCW)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	812
Count of miRNA genes:	293
Interacting mature miRNAs:	378
Transcripts:	ENSRNOT00000023478
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	3204777	48204777	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat

BF405317

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	48,214,088 - 48,214,184 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	53,739,702 - 53,739,797	NCBI	Rnor6.0
Rnor_5.0	19	64,468,559 - 64,468,654	UniSTS	Rnor5.0
RGSC_v3.4	19	50,481,434 - 50,481,529	UniSTS	RGSC3.4
Celera	19	47,470,167 - 47,470,262	UniSTS
RH 3.4 Map	19	648.6	UniSTS
Cytogenetic Map	19	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001107436	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006255743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601302	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023478 ⟹ ENSRNOP00000023478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	48,198,209 - 48,214,716 (+)	Ensembl
Rnor_6.0 Ensembl	19	53,723,822 - 53,740,329 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099058 ⟹ ENSRNOP00000077825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	48,198,209 - 48,216,575 (+)	Ensembl

RefSeq Acc Id:

NM_001107436 ⟹ NP_001100906

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,077,790 - 65,125,185 (+)	NCBI
mRatBN7.2	19	48,169,175 - 48,216,571 (+)	NCBI
Rnor_6.0	19	53,723,822 - 53,740,329 (+)	NCBI
Rnor_5.0	19	64,452,679 - 64,471,041 (+)	NCBI
RGSC_v3.4	19	50,465,554 - 50,482,061 (+)	RGD
Celera	19	47,454,287 - 47,470,794 (+)	RGD

Sequence:

show sequence

GCTGGAGCACATAGAGGTGTGGCGTGCTGCTTGGCTGGGAGGGATCCTGACGCTGGTGTTTTTCGGTTAGCAAGTGCCCGTGCCGTGCTTCCACATAGAGCAAAGTGGACATGAGAAACAGACGCTGG
CTGTTGGCATCAGGGACTCTGTAGACGCCACGGGGCCGCTGAGCTGCTAGAGACTCCAGCCTTGGTGGCCAGCGACTCCCAACACCACAGTGCGTGCAGCTTCAGGAAGCAGCTCCCCGGCTGTGCAC
ATCCTGTGTGGCAGCCCAGCTACCATGGAGGCCCCAGAAGTCCCTGTGGGCTCCCTGATTGACTTTGGGACTGAACCACCCACCTCCCCTCCCTTGGAAGCAGCACCTTCAACACTCCAGGACCCAGA
TGGCTCCCTGGGTGATGGTGCATCTGAGAGTGAGACCACCGAGTCCGCAGACAGTGAGAATGACATGGGCGAGTCACCATCGCACCCGTCCTGGGACCAGGACCGACGCTCTTCCTCCAATGAATCCT
TCTCCTCCAATCAGAGTGCTGATTCGGCCCCCGACGAGGAGACCTTGGCACTTCGCGAGTTCATGCGCAGCTACGTAGAGAAGATCTTCTCTGGAGGGGAGGACCTGGACCAGGAGGAAAAAGCCAAG
TTTGGGGAATACTGCAGCGGAGAAGATGGGAAAGGCCGGGAGTGGTTCGCACGCTTTGTGAGCGCACAGCGCTGCAAGTCCAAGTGTGTGTCCGAGCCAACCTTCTACCGCCTGGTGCAGTCCTTCGC
GGTGGTGCTGTTTGAATGCCACCAGATGGACGACTTCGGGCCTGCCAAGAACCTCATGACCATGTGCTTCACCTACTACTACCTGGGCAAGCCGTACCTGCCCCCTACAGAGCCCAGGGAGAAGCCCG
CTGGCAGCATTGACTCCTACCTGAAGTCAGCGAACAGTTGGCTGGCAGAGAAGAAGGACATTGCTGAGCGGCTGCTGAAGAACACGGAGAACATGAAAGGCTTCTTCGGGGGGCTGGAGACCAAGCTC
AAAGGACCACTGGTCAGGAAAAACGAGGAGGATGAGAACAAACCTAAGGACAGACAGACGAAGACTGTGACCGTGATCAGCCCCGAAGATGAACAGAAGGGGGAGAAGGTTTACCTGTACACGCACCT
GAGGCAGCAGCCCATCTGGCACACACTGAGGTTCTGGAATGCGGCCTTTTTCGATGCTGTCCACTGTGAGAGGCGGAAGCGATCCCCCACCACCAGAGGGGATGCTGGAGAGCAGGAGGAGAAGAGGG
AGAAATGGTGCCACATGACCCAGGAGGAACGGGATGACAGCCTGCGGTTCAATGAGAACATCACCTTCGGGCAGCTGGGCACGTTCACCCACAACATGCTGGCCTTTGGCTTGAACAAGAAGCTATGC
AGCGACTTCCTGAAGAAGCAGGCTGTGATCGGCAATCTGGATGAGGAGCAATACAAGCTGCTAAGTGACCACATTGAGCAAATGGCCACAGAGTAGGAGATCGGCACATGCTCTTCTCCCAGGAGCTG
TCACCCCAGTGATGACCCTGCATGACACCAGCAGCACCCAGAGCCGCTCCTTGCTGCCCTAGAACTAGCAAAGACTCCAGAAGCCTGTCTCCCCCTGCCTGTGTCTGCTCTCCCCTCTATGTATAAGG
TGTCCCTTGGGTTACACAGCTAAAAATGAGGGACCATCTACCCCCCCCACACCCATCCTTGAGCACCAGGCTTATGACATGATGAGGGTGGAGGAAGAGGCCGTGAGGTATGGTCACCACAGTTCCTG
CTGAGAGCCAGGGATATGTGGACACTGAGGTCCAGGAGGGGATCCATACAGCTGTAATGTGTGGACAGAATCAGTACTGTGGGCGACAGCCTGCTACTCCCTGCCAGAGGGCGTCCTGTGGACGTAAG
CTGTACAGAAGGACCATGGAGCCTTCCTGAAAGGTCTTGCCTATCTGCACTTCTCCACCCCCTCATATGACAGGAACTGAAAGAAAACCCAAGGGCTGTCACTTTCCCAGGGGGTGTGAGCGTTCTGC
CAGCCACAACCATGTCTCAGACTCAGGAGCTCTCTCTGTCAATAGAACCTGTAAACTGTCCACTCAGCACAGTCTCCCTCAGCAGCAGCGGAAGTCCGTCCATCCACTCCCAGGCAGCAGCAATATAT
GATGCGGGACGCAAGAAGCATGGGGAAAAGTTTTCTTCGGCGGCTCTGGGGTGGCGCCCTTGCTGAAAGCAATGGTTCAGCTGGAGCACACAGAATGGATCTGACTGAGGGAGGAGACCACAAGGGAG
CAAGGCCGCCTGGTCGCTCCAGCCTACAGTCCTCTCCTTCTGAAAGGCCCACAGTGACCTGCTTCCTCTCCATCCTTGTACACGTCTGACCCTCAGCGTCCAGCGTGCCGGCTCCAGAGCTGCTTGTT
CCCATCCACCCCAATGGCTTTGGTCCCTTCTGTGCCAGCTCTTCTGGTCACTGACCTTGAACTAGGCCTGCAGGCTCTCCTGTCACCCTGTATCACCTCATCCTTCTCTGTCCCCCAGCCTTCGGTCA
CATTTAGTCATGTTCTGCCTGTGAGCGCAGCGGTTCTCCCCTGACAGCGTGAACTCAGCTGGTGCGGGGGCCTTGCCTGTGGGAGAGCCTCCCTAGGATGTCCAAAGAAGAACAGGCGAGGCCAGCCC
GGCTGTGGAAGGCACGTTTCCTGGGTGCTGAGGTGACTGAGGCGGTGCATCAATCACGGAGCTATTCAAGCGAACGCTGACAGGAAGATCAGCCCCTGGTGGCAGAGTATGTGTCACTGGGGCCAACT
AGTACACCTAACCCAGCATCAAGACCCTAGAACCATGTCTGTCTCCACTCTGTGTTTTAGAGAAGTGATATAAAGGGAGATCGCCCTTGCTAAGTCCTGCTGTCCTTTCTAGAGCCTTCCTCTGCTGT
GCAAGCATGGTATCCTGTCCTTGCTCCTCCCAGCCTGCATTGGTATGAGTTCAGGTACAGTAAGATGACTCCAAGGTGCTGTGAGTTCTTGTATGGCAGCACCCACGTGGTCTGACTTCTGCCTTGCC
CTCGTGCAGTCTTGTACCACCTTATGGGGAAGAGTGCCAATGGTTCTAACATGGACTTCAGAAGTGACTTTGAGACTGACCCTACTGACCTTTTGAGACGGTCACTTAAGGAAGAGGGAAGGATGGTT
CTATTCTGTCTGTCTCTTGTTCCTTATTGTTGCAGATCCAGCTCCACAGTCAGAAATTCTGACCCACTTAGACCCACACGCACTGCTAAGGACATGGTAACCCTCTGGGGACAGGGCAGCCCTTGATG
GGAGCAAAGCTTGTAGGTGCCTGGAGGTGGTCCCACCATCGCCTGCAGATGTCCTCTGTTCACAGCTAGGTTCAATGAGCATTTCATGTCTGCGAGCCTCTGGCCGGTCTCTGGGAGGTCACTAATCC
ACCTGAGGTGCCCTGTCTTCCTGTCATGGCCCTCTCCTAGGGCCCACCAAGCAAGCGTGAACCGGGTTCGCTGGCAAGCACTCCTCAGCCGCCCTGCAGAGCTCATGAACCACAGACAGTTCAGATTA
CCTGGATAATCCAAGCAGCATCTCCAGTCTTGGCTGGTAGTGCCCAGATCTGTGCAGGCCCATTAGCACAGGCTCAAACCTCCGTGGGCTGTGACCTTCAAGGCTATGTGAATCAGTGTCAAGCACAG
TAAAATGTTTTCCCTCACAGG

hide sequence

RefSeq Acc Id:

XM_006255743 ⟹ XP_006255805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,076,626 - 65,125,185 (+)	NCBI
mRatBN7.2	19	48,169,105 - 48,216,571 (+)	NCBI
Rnor_6.0	19	52,763,352 - 53,742,184 (+)	NCBI
Rnor_5.0	19	64,452,679 - 64,471,041 (+)	NCBI

Sequence:

show sequence

CGGCTCACCGCGCCCGGCGCATCCGCGGCAGCTGCGGACCCGACGGCGTCCGCCCCCTGCCCGG
TCCCGCGGGCTGCCGCGGCGAGAGGGCCTCGGGCTGCGGTGCTGCACTCGCGAGGGGCTGTGCGGCGTGGCTGAGCGGGGACCGACGCCACGGGGCCGCTGAGCTGCTAGAGACTCCAGCCTTGGTGG
CCAGCGACTCCCAACACCACAGTGCGTGCAGCTTCAGGAAGCAGCTCCCCGGCTGTGCACATCCTGTGTGGCAGCCCAGCTACCATGGAGGCCCCAGAAGTCCCTGTGGGCTCCCTGATTGACTTTGG
GACTGAACCACCCACCTCCCCTCCCTTGGAAGCAGCACCTTCAACACTCCAGGACCCAGATGGCTCCCTGGGTGATGGTGCATCTGAGAGTGAGACCACCGAGTCCGCAGACAGTGAGAATGACATGG
GCGAGTCACCATCGCACCCGTCCTGGGACCAGGACCGACGCTCTTCCTCCAATGAATCCTTCTCCTCCAATCAGAGTGCTGATTCGGCCCCCGACGAGGAGACCTTGGCACTTCGCGAGTTCATGCGC
AGCTACGTAGAGAAGATCTTCTCTGGAGGGGAGGACCTGGACCAGGAGGAAAAAGCCAAGTTTGGGGAATACTGCAGCGGAGAAGATGGGAAAGGCCGGGAGTGGTTCGCACGCTTTGTGAGCGCACA
GCGCTGCAAGTCCAAGTGTGTGTCCGAGCCAACCTTCTACCGCCTGGTGCAGTCCTTCGCGGTGGTGCTGTTTGAATGCCACCAGATGGACGACTTCGGGCCTGCCAAGAACCTCATGACCATGTGCT
TCACCTACTACTACCTGGGCAAGCCGTACCTGCCCCCTACAGAGCCCAGGGAGAAGCCCGCTGGCAGCATTGACTCCTACCTGAAGTCAGCGAACAGTTGGCTGGCAGAGAAGAAGGACATTGCTGAG
CGGCTGCTGAAGAACACGGAGAACATGAAAGGCTTCTTCGGGGGGCTGGAGACCAAGCTCAAAGGACCACTGGTCAGGAAAAACGAGGAGGATGAGAACAAACCTAAGGACAGACAGACGAAGACTGT
GACCGTGATCAGCCCCGAAGATGAACAGAAGGGGGAGAAGGTTTACCTGTACACGCACCTGAGGCAGCAGCCCATCTGGCACACACTGAGGTTCTGGAATGCGGCCTTTTTCGATGCTGTCCACTGTG
AGAGGCGGAAGCGATCCCCCACCACCAGGGAGAAATGGTGCCACATGACCCAGGAGGAACGGGATGACAGCCTGCGGTTCAATGAGAACATCACCTTCGGGCAGCTGGGCACGTTCACCCACAACATG
CTGGCCTTTGGCTTGAACAAGAAGCTATGCAGCGACTTCCTGAAGAAGCAGGCTGTGATCGGCAATCTGGATGAGGAGCAATACAAGCTGCTAAGTGACCACATTGAGCAAATGGCCACAGAGTAGGA
GATCGGCACATGCTCTTCTCCCAGGAGCTGTCACCCCAGTGATGACCCTGCATGACACCAGCAGCACCCAGAGCCGCTCCTTGCTGCCCTAGAACTAGCAAAGACTCCAGAAGCCTGTCTCCCCCTGC
CTGTGTCTGCTCTCCCCTCTATGTATAAGGTGTCCCTTGGGTTACACAGCTAAAAATGAGGGACCATCTACCCCCCCCACACCCATCCTTGAGCACCAGGCTTATGACATGATGAGGGTGGAGGAAGA
GGCCGTGAGGTATGGTCACCACAGTTCCTGCTGAGAGCCAGGGATATGTGGACACTGAGGTCCAGGAGGGGATCCATACAGCTGTAATGTGTGGACAGAATCAGTACTGTGGGCGACAGCCTGCTACT
CCCTGCCAGAGGGCGTCCTGTGGACGTAAGCTGTACAGAAGGACCATGGAGCCTTCCTGAAAGGTCTTGCCTATCTGCACTTCTCCACCCCCTCATATGACAGGAACTGAAAGAAAACCCAAGGGCTG
TCACTTTCCCAGGGGGTGTGAGCGTTCTGCCAGCCACAACCATGTCTCAGACTCAGGAGCTCTCTCTGTCAATAGAACCTGTAAACTGTCCACTCAGCACAGTCTCCCTCAGCAGCAGCGGAAGTCCG
TCCATCCACTCCCAGGCAGCAGCAATATATGATGCGGGACGCAAGAAGCATGGGGAAAAGTTTTCTTCGGCGGCTCTGGGGTGGCGCCCTTGCTGAAAGCAATGGTTCAGCTGGAGCACACAGAATGG
ATCTGACTGAGGGAGGAGACCACAAGGGAGCAAGGCCGCCTGGTCGCTCCAGCCTACAGTCCTCTCCTTCTGAAAGGCCCACAGTGACCTGCTTCCTCTCCATCCTTGTACACGTCTGACCCTCAGCG
TCCAGCGTGCCGGCTCCAGAGCTGCTTGTTCCCATCCACCCCAATGGCTTTGGTCCCTTCTGTGCCAGCTCTTCTGGTCACTGACCTTGAACTAGGCCTGCAGGCTCTCCTGTCACCCTGTATCACCT
CATCCTTCTCTGTCCCCCAGCCTTCGGTCACATTTAGTCATGTTCTGCCTGTGAGCGCAGCGGTTCTCCCCTGACAGCGTGAACTCAGCTGGTGCGGGGGCCTTGCCTGTGGGAGAGCCTCCCTAGGA
TGTCCAAAGAAGAACAGGCGAGGCCAGCCCGGCTGTGGAAGGCACGTTTCCTGGGTGCTGAGGTGACTGAGGCGGTGCATCAATCACGGAGCTATTCAAGCGAACGCTGACAGGAAGATCAGCCCCTG
GTGGCAGAGTATGTGTCACTGGGGCCAACTAGTACACCTAACCCAGCATCAAGACCCTAGAACCATGTCTGTCTCCACTCTGTGTTTTAGAGAAGTGATATAAAGGGAGATCGCCCTTGCTAAGTCCT
GCTGTCCTTTCTAGAGCCTTCCTCTGCTGTGCAAGCATGGTATCCTGTCCTTGCTCCTCCCAGCCTGCATTGGTATGAGTTCAGGTACAGTAAGATGACTCCAAGGTGCTGTGAGTTCTTGTATGGCA
GCACCCACGTGGTCTGACTTCTGCCTTGCCCTCGTGCAGTCTTGTACCACCTTATGGGGAAGAGTGCCAATGGTTCTAACATGGACTTCAGAAGTGACTTTGAGACTGACCCTACTGACCTTTTGAGA
CGGTCACTTAAGGAAGAGGGAAGGATGGTTCTATTCTGTCTGTCTCTTGTTCCTTATTGTTGCAGATCCAGCTCCACAGTCAGAAATTCTGACCCACTTAGACCCACACGCACTGCTAAGGACATGGT
AACCCTCTGGGGACAGGGCAGCCCTTGATGGGAGCAAAGCTTGTAGGTGCCTGGAGGTGGTCCCACCATCGCCTGCAGATGTCCTCTGTTCACAGCTAGGTTCAATGAGCATTTCATGTCTGCGAGCC
TCTGGCCGGTCTCTGGGAGGTCACTAATCCACCTGAGGTGCCCTGTCTTCCTGTCATGGCCCTCTCCTAGGGCCCACCAAGCAAGCGTGAACCGGGTTCGCTGGCAAGCACTCCTCAGCCGCCCTGCA
GAGCTCATGAACCACAGACAGTTCAGATTACCTGGATAATCCAAGCAGCATCTCCAGTCTTGGCTGGTAGTGCCCAGATCTGTGCAGGCCCATTAGCACAGGCTCAAACCTCCGTGGGCTGTGACCTT
CAAGGCTATGTGAATCAGTGTCAAGCACAGTAAAATGTTTTCCCTCACAGGAAAAAAAATAGTCTTGTTGTGAGAACAGGCCAGGGGGGCCACCACTCTGCTGTCTTCAGCTGTGTTAGGAGATCGTG
GGTGTTGGAGGCTGAGCATGGCAGCCTCCAGGCCACCTCTGCTGAGTGTCTGGCCACAGGCAGAGCCACGCCGTGGTATATTGAGAGATCTGCATTTTTCAACCTGCCAGACTCATTTTCTTCTTGTC
CAAGACACGGAGAGACTGAGAAGCTCAGCATCTCAGAAGGCCCGGGGTCAAGACTGTCTCCACGCTTCGTCTGCACAGGAAGGAGGTCTTCCTAGTTGAGCCTACTGTACTTCTGTAGTCCCTCACTC
AAGAGGCGGAGGCAGGAGGATCAGGAGCTCAAGGTCATCCTCAGCTATATAGGGGGTTCAAAGCCAGCCTGGGCCCAACCAATCAAATGTGATCTTAAGAATGCAGGGTGGGCTTGGAGCCAGTGCCC
CAGCTTGAGACTTAGCCTGATGCAGAAGTAGGATTCACAGCCTGCCTTGTCCAACCTCACCTGAGAGGAAGCAGTGGGTGGTCTGTCCCTGTTTCTGCAGTCCAAGGACACGGAGGCCTCAGGGACAG
TGCCCTAGAAACACCTGCCACTCTAGGTTGCTACTGTGAGGGACCTAGCATCTATGTGGAAAGCTGAGGTCTAATTCTGGTGACATTAGCAGTCCCAGGCCACAAGCTCACACCCAACCTTGACCTTC
CTGGGTCACGCTGACCTGTGGGTTTTTTCGCTAGGGAGGAAAGGTCTGGGCCTGCTCAGCTAGAGCAGCTTTATTCCGGCTCCCAGAACACATCAGACAGCCAGGAGACTTGAGAGCTAGAGGAAGGC
AGTAGGCAGGGACTCTAGGAGGTGGCGCTGGCCCCACACCTCAGGGAAATGACAGGACCCTTCTCAGCAGAGATTCCTTGGTTCCAAACTCCTGCCCCCACTCCTCCCACCTTCCACGCCAGCTGCAG
GGCCTTCACTAAGGGCTGAGCTTGCCTCACCCAACTCTTGTGCAGATCCAGCCTCACAGCCACAGTCTTAGGTCTGTTTAGCTTGAGAAGCTGCAAGGGGACACCCATGTTCATGGACCTCCCCAGGA
AGTTGGTGGTTTGGGGGACCAGCCTCACTGCAGACTCCAGGCTCTGACAGGCAGTGGCATGGGCCCAGCTGCAAGCCATGCTCAATAGACATAACTCCAGTGACTTTGCACTTTATCTAGAAAGGACC
CCTCCCCATGGATTGCCTCAGCTTTGACCCTGAGCTAAGGCTGGCCCGTCCCATCCTCACTCCTAGATGATGCATGTGTTCATGAGGAAGGAAAGAGACCCTGCCTGGGGAAGAAGTTTGGCTCACAG
CCACCCTTGCAAGAAGGGTTAGGGTCAGCCAGGGAGAAGAGCCCTGGTTAGGCCTTGGATCGTCACATCATTCAGGATAAATATCCCTTGGGAGGGATGAGTTGGACATTTAACTGCTAGGATTCTAG
AGGCTCAGACAGCAGGCATGTATCCCCATGGGGAATATGTGAGGACCTGGACCGTCGGCTGCCTAGGCTGTACTCAGTTTTCATGTAGCTTTCTATAGAGATTAAACCTGCAGTCTGTTCTTTCTCGG
GGTTCCACATCCATTTCTTGCCAGCAGCTCCCAGTGATGCTGTATTTTGTATGTTAGTTACACAACTTTGTGTCCTGTCAGGTCAGGTTCTAAAATTAAGGCTGAGAAAGGTGTGAGGTCGAAGATCT
CTCAGACAGTGCCGTTTCCTGCGAAGAAAAAAAAAAAATGTGTATATATCCATAGATAAAGTACCTTGTCTTGTCAGGAGGTGAAAACTGAAATAAATTATCTTTTAAAAAGAA

hide sequence

RefSeq Acc Id:

XM_039097779 ⟹ XP_038953707

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,076,626 - 65,125,185 (+)	NCBI
mRatBN7.2	19	48,168,651 - 48,216,571 (+)	NCBI

RefSeq Acc Id:

XM_063278062 ⟹ XP_063134132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,076,626 - 65,125,185 (+)	NCBI

RefSeq Acc Id:

XM_063278063 ⟹ XP_063134133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	65,106,650 - 65,125,185 (+)	NCBI


Protein RefSeqs	NP_001100906	(Get FASTA)	NCBI Sequence Viewer
	XP_006255805	(Get FASTA)	NCBI Sequence Viewer
	XP_038953707	(Get FASTA)	NCBI Sequence Viewer
	XP_063134132	(Get FASTA)	NCBI Sequence Viewer
	XP_063134133	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL92695	(Get FASTA)	NCBI Sequence Viewer
	EDL92696	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023478
	ENSRNOP00000023478.5
	ENSRNOP00000077825
	ENSRNOP00000077825.1

RefSeq Acc Id:

NP_001100906 ⟸ NM_001107436

- UniProtKB:

D4A3C2 (UniProtKB/TrEMBL), A6IZL7 (UniProtKB/TrEMBL), A0A8I5Y1M9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAPEVPVGSLIDFGTEPPTSPPLEAAPSTLQDPDGSLGDGASESETTESADSENDMGESPSHPSWDQDRRSSSNESFSSNQSADSAPDEETLALREFMRSYVEKIFSGGEDLDQEEKAKFGEYCSGE
DGKGREWFARFVSAQRCKSKCVSEPTFYRLVQSFAVVLFECHQMDDFGPAKNLMTMCFTYYYLGKPYLPPTEPREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTENMKGFFGGLETKLKGPLVRKN
EEDENKPKDRQTKTVTVISPEDEQKGEKVYLYTHLRQQPIWHTLRFWNAAFFDAVHCERRKRSPTTRGDAGEQEEKREKWCHMTQEERDDSLRFNENITFGQLGTFTHNMLAFGLNKKLCSDFLKKQA
VIGNLDEEQYKLLSDHIEQMATE

hide sequence

RefSeq Acc Id:	XP_006255805 ⟸ XM_006255743
- Peptide Label:	isoform X2
- UniProtKB:	A6IZL8 (UniProtKB/TrEMBL), A0A8I5Y1M9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEAPEVPVGSLIDFGTEPPTSPPLEAAPSTLQDPDGSLGDGASESETTESADSENDMGESPSHP SWDQDRRSSSNESFSSNQSADSAPDEETLALREFMRSYVEKIFSGGEDLDQEEKAKFGEYCSGEDGKGREWFARFVSAQRCKSKCVSEPTFYRLVQSFAVVLFECHQMDDFGPAKNLMTMCFTYYYLG KPYLPPTEPREKPAGSIDSYLKSANSWLAEKKDIAERLLKNTENMKGFFGGLETKLKGPLVRKNEEDENKPKDRQTKTVTVISPEDEQKGEKVYLYTHLRQQPIWHTLRFWNAAFFDAVHCERRKRSP TTREKWCHMTQEERDDSLRFNENITFGQLGTFTHNMLAFGLNKKLCSDFLKKQAVIGNLDEEQYKLLSDHIEQMATE hide sequence

Ensembl Acc Id:

ENSRNOP00000023478 ⟸ ENSRNOT00000023478

RefSeq Acc Id:	XP_038953707 ⟸ XM_039097779
- Peptide Label:	isoform X1
- UniProtKB:	D4A3C2 (UniProtKB/TrEMBL), A6IZL7 (UniProtKB/TrEMBL), A0A8I5Y1M9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000077825 ⟸ ENSRNOT00000099058

Protein Domains

SBF1/SBF2

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A3C2-F1-model_v2	AlphaFold	D4A3C2	1-407	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5494	BioCyc
Ensembl Genes	ENSRNOG00000017431	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023478	ENTREZGENE
	ENSRNOT00000023478.6	UniProtKB/TrEMBL
	ENSRNOT00000099058	ENTREZGENE
	ENSRNOT00000099058.1	UniProtKB/TrEMBL
InterPro	KIAA0513	UniProtKB/TrEMBL
	SBF1/SBF2	UniProtKB/TrEMBL
KEGG Report	rno:307907	UniProtKB/TrEMBL
NCBI Gene	307907	ENTREZGENE
PANTHER	PTHR13663	UniProtKB/TrEMBL
	SIMILAR TO RIKEN CDNA 6430548M08	UniProtKB/TrEMBL
Pfam	SBF2	UniProtKB/TrEMBL
PhenoGen	6430548M08Rikl	PhenoGen
RatGTEx	ENSRNOG00000017431	RatGTEx
UniProt	A0A8I5Y1M9	ENTREZGENE, UniProtKB/TrEMBL
	A6IZL7	ENTREZGENE, UniProtKB/TrEMBL
	A6IZL8	ENTREZGENE, UniProtKB/TrEMBL
	D4A3C2	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-04-17	6430548M08Rikl	RIKEN cDNA 6430548M08 gene like	RGD1304884	similar to RIKEN cDNA 6430548M08	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1304884	similar to RIKEN cDNA 6430548M08	RGD1304884_predicted	similar to RIKEN cDNA 6430548M08 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1304884_predicted	similar to RIKEN cDNA 6430548M08 (predicted)	LOC307907_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC307907_predicted	similar to RIKEN cDNA 6430548M08 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar