6430548M08Rikl (RIKEN cDNA 6430548M08 gene like) - Rat Genome Database

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Gene: 6430548M08Rikl (RIKEN cDNA 6430548M08 gene like) Rattus norvegicus
Analyze
Symbol: 6430548M08Rikl (Ensembl: RGD1304884)
Name: RIKEN cDNA 6430548M08 gene like (Ensembl:similar to RIKEN cDNA 6430548M08)
RGD ID: 1304884
Description: Orthologous to human KIAA0513 (KIAA0513); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC307907; Kiaa0513; LOC307907; RGD1304884; similar to RIKEN cDNA 6430548M08; uncharacterized protein KIAA0513 homolog; uncharacterized protein LOC307907
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,076,626 - 65,125,185 (+)NCBIGRCr8
mRatBN7.21948,168,651 - 48,216,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,198,209 - 48,216,575 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,992,553 - 55,009,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01955,673,287 - 55,689,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,886,787 - 57,903,300 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,763,352 - 53,742,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,723,822 - 53,740,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,452,679 - 64,471,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,465,554 - 50,482,061 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11950,441,370 - 50,488,797 (+)NCBI
Celera1947,454,287 - 47,470,794 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17010949  


Genomics

Comparative Map Data
6430548M08Rikl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81965,076,626 - 65,125,185 (+)NCBIGRCr8
mRatBN7.21948,168,651 - 48,216,571 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1948,198,209 - 48,216,575 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,992,553 - 55,009,060 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01955,673,287 - 55,689,794 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,886,787 - 57,903,300 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,763,352 - 53,742,184 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,723,822 - 53,740,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01964,452,679 - 64,471,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41950,465,554 - 50,482,061 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11950,441,370 - 50,488,797 (+)NCBI
Celera1947,454,287 - 47,470,794 (+)NCBICelera
Cytogenetic Map19q12NCBI
KIAA0513
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381685,027,795 - 85,094,230 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1685,027,782 - 85,094,230 (+)EnsemblGRCh38hg38GRCh38
GRCh371685,061,401 - 85,127,836 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361683,618,911 - 83,685,337 (+)NCBINCBI36Build 36hg18NCBI36
Celera1669,363,621 - 69,430,043 (+)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1670,814,038 - 70,880,098 (+)NCBIHuRef
CHM1_11686,472,945 - 86,539,364 (+)NCBICHM1_1
T2T-CHM13v2.01691,094,420 - 91,160,858 (+)NCBIT2T-CHM13v2.0
6430548M08Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,840,891 - 120,892,046 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,840,891 - 120,892,045 (+)EnsemblGRCm39 Ensembl
GRCm388120,114,152 - 120,165,307 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8120,114,152 - 120,165,306 (+)EnsemblGRCm38mm10GRCm38
MGSCv378122,638,052 - 122,689,207 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368123,031,206 - 123,049,395 (+)NCBIMGSCv36mm8
Celera8124,334,610 - 124,385,877 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map868.99NCBI
Kiaa0513
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955541437,061 - 476,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955541437,106 - 476,131 (+)NCBIChiLan1.0ChiLan1.0
KIAA0513
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,780,103 - 94,846,352 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,697,192 - 100,763,520 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,697,578 - 65,763,822 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11685,035,898 - 85,102,525 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1685,035,898 - 85,096,623 (+)Ensemblpanpan1.1panPan2
KIAA0513
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1567,481,098 - 67,544,078 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,474,507 - 67,544,681 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha567,496,910 - 67,557,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0567,714,799 - 67,775,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl567,709,410 - 67,775,611 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1567,730,790 - 67,791,582 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0567,565,267 - 67,625,996 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0567,980,043 - 68,040,853 (-)NCBIUU_Cfam_GSD_1.0
Kiaa0513
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,360,087 - 27,413,488 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366413,113,634 - 3,132,062 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366413,113,634 - 3,167,019 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA0513
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl63,724,785 - 3,779,924 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.163,724,784 - 3,786,285 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.264,158,815 - 4,206,363 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA0513
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1570,438,139 - 70,502,918 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl570,438,150 - 70,499,848 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660475,241,257 - 5,306,169 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kiaa0513
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,751,381 - 1,798,050 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,751,451 - 1,797,526 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 6430548M08Rikl
184 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:812
Count of miRNA genes:293
Interacting mature miRNAs:378
Transcripts:ENSRNOT00000023478
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat

Markers in Region
BF405317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21948,214,088 - 48,214,184 (+)MAPPERmRatBN7.2
Rnor_6.01953,739,702 - 53,739,797NCBIRnor6.0
Rnor_5.01964,468,559 - 64,468,654UniSTSRnor5.0
RGSC_v3.41950,481,434 - 50,481,529UniSTSRGSC3.4
Celera1947,470,167 - 47,470,262UniSTS
RH 3.4 Map19648.6UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000023478   ⟹   ENSRNOP00000023478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,198,209 - 48,214,716 (+)Ensembl
Rnor_6.0 Ensembl1953,723,822 - 53,740,329 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099058   ⟹   ENSRNOP00000077825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1948,198,209 - 48,216,575 (+)Ensembl
RefSeq Acc Id: NM_001107436   ⟹   NP_001100906
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,077,790 - 65,125,185 (+)NCBI
mRatBN7.21948,169,175 - 48,216,571 (+)NCBI
Rnor_6.01953,723,822 - 53,740,329 (+)NCBI
Rnor_5.01964,452,679 - 64,471,041 (+)NCBI
RGSC_v3.41950,465,554 - 50,482,061 (+)RGD
Celera1947,454,287 - 47,470,794 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255743   ⟹   XP_006255805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,076,626 - 65,125,185 (+)NCBI
mRatBN7.21948,169,105 - 48,216,571 (+)NCBI
Rnor_6.01952,763,352 - 53,742,184 (+)NCBI
Rnor_5.01964,452,679 - 64,471,041 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097779   ⟹   XP_038953707
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,076,626 - 65,125,185 (+)NCBI
mRatBN7.21948,168,651 - 48,216,571 (+)NCBI
RefSeq Acc Id: XM_063278062   ⟹   XP_063134132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,076,626 - 65,125,185 (+)NCBI
RefSeq Acc Id: XM_063278063   ⟹   XP_063134133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81965,106,650 - 65,125,185 (+)NCBI
RefSeq Acc Id: NP_001100906   ⟸   NM_001107436
- UniProtKB: D4A3C2 (UniProtKB/TrEMBL),   A6IZL7 (UniProtKB/TrEMBL),   A0A8I5Y1M9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006255805   ⟸   XM_006255743
- Peptide Label: isoform X2
- UniProtKB: A6IZL8 (UniProtKB/TrEMBL),   A0A8I5Y1M9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000023478   ⟸   ENSRNOT00000023478
RefSeq Acc Id: XP_038953707   ⟸   XM_039097779
- Peptide Label: isoform X1
- UniProtKB: D4A3C2 (UniProtKB/TrEMBL),   A6IZL7 (UniProtKB/TrEMBL),   A0A8I5Y1M9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077825   ⟸   ENSRNOT00000099058
RefSeq Acc Id: XP_063134132   ⟸   XM_063278062
- Peptide Label: isoform X1
- UniProtKB: A6IZL7 (UniProtKB/TrEMBL),   D4A3C2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134133   ⟸   XM_063278063
- Peptide Label: isoform X1
- UniProtKB: A6IZL7 (UniProtKB/TrEMBL),   D4A3C2 (UniProtKB/TrEMBL)
Protein Domains
SBF1/SBF2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3C2-F1-model_v2 AlphaFold D4A3C2 1-407 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304884 AgrOrtholog
BioCyc Gene G2FUF-5494 BioCyc
Ensembl Genes ENSRNOG00000017431 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023478.6 UniProtKB/TrEMBL
  ENSRNOT00000099058.1 UniProtKB/TrEMBL
InterPro KIAA0513 UniProtKB/TrEMBL
  SBF1/SBF2 UniProtKB/TrEMBL
KEGG Report rno:307907 UniProtKB/TrEMBL
NCBI Gene 307907 ENTREZGENE
PANTHER PTHR13663 UniProtKB/TrEMBL
  SIMILAR TO RIKEN CDNA 6430548M08 UniProtKB/TrEMBL
Pfam SBF2 UniProtKB/TrEMBL
PhenoGen 6430548M08Rikl PhenoGen
RatGTEx ENSRNOG00000017431 RatGTEx
UniProt A0A8I5Y1M9 ENTREZGENE, UniProtKB/TrEMBL
  A6IZL7 ENTREZGENE, UniProtKB/TrEMBL
  A6IZL8 ENTREZGENE, UniProtKB/TrEMBL
  D4A3C2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-17 6430548M08Rikl  RIKEN cDNA 6430548M08 gene like  RGD1304884  similar to RIKEN cDNA 6430548M08  Name and Symbol changed 629549 APPROVED
2008-04-30 RGD1304884  similar to RIKEN cDNA 6430548M08   RGD1304884_predicted  similar to RIKEN cDNA 6430548M08 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1304884_predicted  similar to RIKEN cDNA 6430548M08 (predicted)  LOC307907_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307907_predicted  similar to RIKEN cDNA 6430548M08 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL