Wdr24 (WD repeat domain 24) - Rat Genome Database

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Gene: Wdr24 (WD repeat domain 24) Ictidomys tridecemlineatus
Analyze
Symbol: Wdr24
Name: WD repeat domain 24
RGD ID: 12718712
Description: ENCODES a protein that exhibits metal ion binding (inferred); ubiquitin protein ligase activity (inferred); zinc ion binding (inferred); INVOLVED IN positive regulation of protein kinase activity (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 16 (ortholog); cerebellar ataxia type 48 (ortholog); epilepsy (ortholog); FOUND IN cytosol (inferred); GATOR2 complex (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GATOR complex protein WDR24; WD repeat-containing protein 24
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,224,001 - 112,229,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501321,924 - 327,253 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501321,877 - 326,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr24Squirrelautosomal recessive spinocerebellar ataxia 16  ISORGD:13449358554872ClinVar Annotator: match by term: Autosomal recessive spinocerebellar ataxia 16ClinVarPMID:25741868
Wdr24Squirrelcerebellar ataxia type 48  ISORGD:13449358554872ClinVar Annotator: match by term: Spinocerebellar ataxia 48ClinVarPMID:25741868
Wdr24Squirrelepilepsy  ISORGD:13449358554872ClinVar Annotator: match by term: EpilepsyClinVarPMID:28492532
Wdr24SquirrelIdiopathic Generalized Epilepsy  ISORGD:13449358554872ClinVar Annotator: match by term: Idiopathic generalized epilepsyClinVarPMID:28492532
Wdr24Squirrelshort-rib thoracic dysplasia 9 with or without polydactyly  ISORGD:13449358554872ClinVar Annotator: match by term: Saldino-Mainzer syndromeClinVarPMID:19370764|PMID:20301784|PMID:22503633|PMID:23418020|PMID:24009529|PMID:26216056|PMID:28492532
Wdr24Squirreltuberous sclerosis 2  ISORGD:13449358554872ClinVar Annotator: match by term: Tuberous sclerosis 2ClinVarPMID:16114042|PMID:17287951|PMID:28492532|PMID:29932062


Biological Process
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr24Squirrelcellular response to amino acid starvation involved_inIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118
Wdr24Squirrelcellular response to amino acid starvation involved_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelcellular response to nutrient levels involved_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelpositive regulation of macroautophagy involved_inIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118
Wdr24Squirrelpositive regulation of protein kinase activity acts_upstream_of_or_withinISORGD:15511869068941 PMID:31915252MGIPMID:31915252
Wdr24Squirrelpositive regulation of TOR signaling involved_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelpositive regulation of TOR signaling involved_inIEAInterPro:IPR037590150520179 InterProGO_REF:0000002
Wdr24Squirrelpositive regulation of TORC1 signaling involved_inIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118
Wdr24Squirrelpositive regulation of TORC1 signaling involved_inIEAUniProtKB:Q8CFJ9|UniProtKB:Q96S15|ensembl:ENSMUSP00000026833|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelprotein K6-linked ubiquitination involved_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelregulation of autophagy involved_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
1 to 11 of 11 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr24Squirrelcytosol located_inIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118
Wdr24Squirrelcytosol located_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24SquirrelGATOR2 complex part_ofIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118
Wdr24SquirrelGATOR2 complex part_ofIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrellysosomal membrane located_inIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelvacuolar membrane located_inIEAPANTHER:PTN001110090150520179 TreeGrafterGO_REF:0000118

Molecular Function
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr24Squirrelmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
Wdr24Squirrelprotein binding enablesISOUniProtKB:Q926249068941 PMID:16189514, PMID:25416956IntActPMID:16189514|PMID:25416956
Wdr24Squirrelprotein binding enablesISOUniProtKB:P58004|UniProtKB:Q9NXC59068941 PMID:26586190, PMID:26972053IntActPMID:26586190|PMID:26972053
Wdr24Squirrelprotein binding enablesISOUniProtKB:P58004|UniProtKB:P58005|UniProtKB:Q6PJI9|UniProtKB:Q9NXC59068941 PMID:25263562IntActPMID:25263562
Wdr24Squirrelprotein binding enablesISOUniProtKB:P58004|UniProtKB:Q5T011|UniProtKB:Q6PJI9|UniProtKB:Q9NXC59068941 PMID:28199315IntActPMID:28199315
Wdr24Squirrelprotein binding enablesISOUniProtKB:P58004|UniProtKB:P58005|UniProtKB:Q9NXC59068941 PMID:26449471IntActPMID:26449471
Wdr24Squirrelprotein binding enablesISOUniProtKB:Q8WTX79068941 PMID:26972053UniProtPMID:26972053
Wdr24Squirrelubiquitin protein ligase activity enablesIEAUniProtKB:Q96S15|ensembl:ENSP00000293883150520179 EnsemblGO_REF:0000107
Wdr24Squirrelzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043
1 to 9 of 9 rows

RGD Manual Annotations


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Wdr24SquirrelmTOR signaling pathway   ISORGD:13449359068941 RGDPMID:24698685|REF_RGD_ID:11535043
PMID:22301074   PMID:30032202  



Wdr24
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,224,001 - 112,229,124 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501321,924 - 327,253 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501321,877 - 326,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR24
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816684,622 - 690,398 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16684,622 - 690,444 (-)EnsemblGRCh38hg38GRCh38
GRCh3716734,622 - 740,398 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616674,703 - 680,401 (-)NCBINCBI36Build 36hg18NCBI36
Build 3416674,702 - 680,401NCBI
Celera16934,859 - 940,557 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16656,579 - 662,277 (-)NCBIHuRef
CHM1_116734,676 - 740,374 (-)NCBICHM1_1
T2T-CHM13v2.016688,697 - 694,473 (-)NCBIT2T-CHM13v2.0
Wdr24
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,042,601 - 26,047,704 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,042,601 - 26,047,704 (+)EnsemblGRCm39 Ensembl
GRCm381725,823,627 - 25,828,730 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1725,823,627 - 25,828,730 (+)EnsemblGRCm38mm10GRCm38
MGSCv371725,960,572 - 25,965,675 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,551,316 - 25,556,324 (+)NCBIMGSCv36mm8
Celera1726,356,450 - 26,361,553 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.92NCBI
Wdr24
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,346,835 - 15,353,384 (+)NCBIGRCr8
mRatBN7.21014,844,089 - 14,848,871 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,843,728 - 14,848,864 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,583,098 - 19,587,880 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,071,974 - 19,076,756 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,572,254 - 14,577,036 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,191,078 - 15,195,860 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,191,078 - 15,195,860 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,004,021 - 15,008,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,089,474 - 15,094,256 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,089,637 - 15,094,113 (+)NCBI
Celera1014,513,031 - 14,517,813 (+)NCBICelera
Cytogenetic Map10q12NCBI
Wdr24
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,513,448 - 16,519,296 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,513,074 - 16,519,296 (+)NCBIChiLan1.0ChiLan1.0
WDR24
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218925,834 - 931,678 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,709,701 - 4,715,567 (-)NCBINHGRI_mPanPan1
PanPan1.116699,007 - 704,844 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16699,142 - 704,869 (-)Ensemblpanpan1.1panPan2
WDR24
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,887,968 - 39,891,633 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,887,667 - 39,891,588 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,151,453 - 41,155,872 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,229,968 - 40,234,399 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,229,769 - 40,234,385 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1639,918,559 - 39,922,977 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,878,768 - 39,883,172 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,357,890 - 40,362,310 (+)NCBIUU_Cfam_GSD_1.0
WDR24
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,085,463 - 41,090,610 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,085,415 - 41,090,628 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,387,148 - 41,392,349 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR24
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15604,412 - 610,665 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5604,545 - 610,359 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,526,690 - 30,532,746 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr24
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,496,029 - 1,501,800 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,496,029 - 1,501,822 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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RefSeq Transcripts XM_005323641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000004034   ⟹   ENSSTOP00000003618
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936501321,924 - 327,253 (+)Ensembl
RefSeq Acc Id: XM_005323641   ⟹   XP_005323698
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344112,224,001 - 112,229,124 (+)NCBI
SpeTri2.0NW_004936501321,877 - 326,984 (+)NCBI
Sequence:
Protein RefSeqs XP_005323698 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003618.2
GenBank Protein KAG3259272 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005323698   ⟸   XM_005323641
- UniProtKB: I3M3G9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000003618   ⟸   ENSSTOT00000004034



1 to 18 of 18 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSTOG00000004014 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004034.3 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR24 UniProtKB/TrEMBL
NCBI Gene Wdr24 ENTREZGENE
PANTHER GATOR COMPLEX PROTEIN WDR24 UniProtKB/TrEMBL
  PTHR46200 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt I3M3G9 ENTREZGENE, UniProtKB/TrEMBL
1 to 18 of 18 rows