Bcap31 (B cell receptor associated protein 31) - Rat Genome Database

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Gene: Bcap31 (B cell receptor associated protein 31) Ictidomys tridecemlineatus
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Symbol: Bcap31
Name: B cell receptor associated protein 31
RGD ID: 12675628
Description: ENCODES a protein that exhibits MHC class I protein binding (inferred); protein-containing complex binding (inferred); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); immune response (ortholog); protein localization to endoplasmic reticulum exit site (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN clathrin-coated vesicle (ortholog); endoplasmic reticulum membrane (ortholog); Golgi cisterna membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: B-cell receptor associated protein 31; B-cell receptor associated protein 31, transcript variant X1; B-cell receptor associated protein 31, transcript variant X2; B-cell receptor associated protein 31, transcript variant X3; B-cell receptor associated protein 31, transcript variant X4; B-cell receptor-associated protein 31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,844,918 - 118,877,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809582,649 - 615,079 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809582,689 - 614,800 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bcap31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,844,918 - 118,877,048 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809582,649 - 615,079 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809582,689 - 614,800 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BCAP31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,700,492 - 153,724,387 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,700,492 - 153,724,565 (-)EnsemblGRCh38hg38GRCh38
GRCh37X152,965,947 - 152,989,842 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,619,146 - 152,643,081 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X152,486,798 - 152,510,734NCBI
CeleraX153,199,631 - 153,223,882 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,623,032 - 141,647,457 (-)NCBIHuRef
CHM1_1X152,840,359 - 152,864,610 (-)NCBICHM1_1
T2T-CHM13v2.0X151,974,158 - 151,998,050 (-)NCBIT2T-CHM13v2.0
Bcap31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,729,784 - 72,761,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,729,784 - 72,759,781 (-)EnsemblGRCm39 Ensembl
GRCm38X73,686,178 - 73,717,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,686,178 - 73,716,175 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X70,931,522 - 70,961,514 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X69,938,903 - 69,968,895 (-)NCBIMGSCv36mm8
CeleraX64,939,998 - 64,969,873 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.38NCBI
Bcap31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,548,911 - 156,581,002 (-)NCBIGRCr8
mRatBN7.2X151,397,567 - 151,429,666 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,397,576 - 151,428,506 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,538,741 - 153,569,200 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,101,972 - 157,132,430 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,773,802 - 154,804,259 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,094,365 - 157,126,397 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX157,095,937 - 157,126,393 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,843,762 - 152,875,715 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,583,683 - 159,614,143 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,658,111 - 159,688,572 (-)NCBI
Celera1136,461,516 - 136,491,976 (+)NCBICelera
Cytogenetic MapXq37NCBI
Bcap31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580428,644 - 459,168 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580429,223 - 459,168 (-)NCBIChiLan1.0ChiLan1.0
LOC100976022
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21235,003,213 - 35,006,790 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A35,005,973 - 35,009,550 (+)NCBINHGRI_mPanPan1
PanPan1.1X153,137,992 - 153,161,628 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,137,992 - 153,161,628 (-)Ensemblpanpan1.1panPan2
BCAP31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,515,417 - 121,550,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,507,084 - 121,545,263 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,844,790 - 106,879,849 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,656,935 - 124,692,012 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,656,941 - 124,686,801 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,426,370 - 120,461,432 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,941,327 - 122,976,452 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,703,489 - 122,738,554 (-)NCBIUU_Cfam_GSD_1.0
BCAP31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,457,001 - 124,484,743 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,456,999 - 124,484,923 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,021,546 - 142,049,432 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BCAP31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,128,739 - 128,152,617 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX128,128,271 - 128,151,823 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606565,991,062 - 66,018,684 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bcap31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946399,227 - 419,642 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946398,901 - 420,767 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008136   ⟹   ENSSTOP00000007287
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809582,649 - 615,079 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000042839   ⟹   ENSSTOP00000030216
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936809582,649 - 615,079 (-)Ensembl
RefSeq Acc Id: XM_005340599   ⟹   XP_005340656
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X118,844,918 - 118,876,921 (-)NCBI
SpeTri2.0NW_004936809582,689 - 614,755 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013365351   ⟹   XP_013220805
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X118,844,918 - 118,877,048 (-)NCBI
SpeTri2.0NW_004936809582,689 - 614,767 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013220805   ⟸   XM_013365351
- UniProtKB: I3MB38 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005340656   ⟸   XM_005340599
- UniProtKB: I3MB38 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000030216   ⟸   ENSSTOT00000042839
Ensembl Acc Id: ENSSTOP00000007287   ⟸   ENSSTOT00000008136

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008138 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008136.3 UniProtKB/TrEMBL
  ENSSTOT00000042839.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro BAP29/BAP31 UniProtKB/TrEMBL
  BAP29/BAP31_N UniProtKB/TrEMBL
  Bap31/Bap29_C UniProtKB/TrEMBL
NCBI Gene Bcap31 ENTREZGENE
PANTHER B-CELL RECEPTOR-ASSOCIATED PROTEIN 31 UniProtKB/TrEMBL
  PTHR12701 UniProtKB/TrEMBL
Pfam Bap31 UniProtKB/TrEMBL
  Bap31_Bap29_C UniProtKB/TrEMBL
UniProt I3MB38 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-12-19 Bcap31  B cell receptor associated protein 31    B-cell receptor associated protein 31  Symbol and/or name change 5135510 APPROVED
2017-05-16 Bcap31  B-cell receptor associated protein 31    B-cell receptor-associated protein 31  Symbol and/or name change 5135510 APPROVED