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Gene: Bet1 (Bet1 golgi vesicular membrane trafficking protein) Ictidomys tridecemlineatus

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Symbol:

Bet1

Name:

Bet1 golgi vesicular membrane trafficking protein

RGD ID:

12654047

Description:

ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy with Rapid Progression (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN Golgi cis cisterna (ortholog); Golgi cisterna (ortholog); SNARE complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BET1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	32,818,459 - 32,826,847 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936585	6,036,472 - 6,043,832 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936585	6,036,452 - 6,044,827 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	COVID-19		ISO	BET1 (Homo sapiens)	9068941	mRNA:increased expression:bronchoalveolar lavage (human)	RGD	PMID:32407669 and REF_RGD_ID:30296672

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	Congenital Muscular Dystrophy with Rapid Progression		ISO	BET1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Muscular dystrophy more ...	ClinVar	PMID:25741868 and PMID:34779586
Bet1	Squirrel	epilepsy		ISO	BET1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Seizure	ClinVar	PMID:25741868 and PMID:34779586
Bet1	Squirrel	pleomorphic xanthoastrocytoma		ISO	BET1 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Pleomorphic xanthoastrocytoma	ClinVar	PMID:28299358

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	Congenital Muscular Dystrophy with Rapid Progression		ISO	BET1 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	endoplasmic reticulum to Golgi vesicle-mediated transport	acts_upstream_of_or_within	ISO	Bet1 (Rattus norvegicus)	9068941	PMID:15728249	MGI	PMID:15728249 and REF_RGD_ID:8554056
Bet1	Squirrel	endoplasmic reticulum to Golgi vesicle-mediated transport	involved_in	IEA	UniProtKB:O15155 and ensembl:ENSP00000222547	150520179		Ensembl	GO_REF:0000107
Bet1	Squirrel	endoplasmic reticulum to Golgi vesicle-mediated transport		ISO	Bet1 (Rattus norvegicus)	9068941		RGD	PMID:16735505 and REF_RGD_ID:4892613
Bet1	Squirrel	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653	150520179		UniProt	GO_REF:0000043
Bet1	Squirrel	vesicle fusion with Golgi apparatus		ISO	Bet1 (Rattus norvegicus)	9068941		RGD	PMID:16735505 and REF_RGD_ID:4892613

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	cis-Golgi network	part_of	IEA	UniProtKB:O15155 and ensembl:ENSP00000222547	150520179		Ensembl	GO_REF:0000107
Bet1	Squirrel	endomembrane system	located_in	IEA	UniProtKB-SubCell:SL-0147	150520179		UniProt	GO_REF:0000044
Bet1	Squirrel	endoplasmic reticulum	part_of	IEA	UniProtKB:O15155 and ensembl:ENSP00000222547	150520179		Ensembl	GO_REF:0000107
Bet1	Squirrel	Golgi apparatus	located_in	IEA	ARBA:ARBA00028708	150520179		UniProt	GO_REF:0000117
Bet1	Squirrel	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	150520179		UniProt	GO_REF:0000043
Bet1	Squirrel	Golgi cis cisterna		ISO	Bet1 (Rattus norvegicus)	9068941	MMO:0000663	RGD	PMID:14742712 and REF_RGD_ID:14394613
Bet1	Squirrel	Golgi cisterna		ISO	Bet1 (Rattus norvegicus)	9068941		RGD	PMID:8621431 and REF_RGD_ID:69776
Bet1	Squirrel	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	150520179		UniProt	GO_REF:0000044
Bet1	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Bet1	Squirrel	SNARE complex		ISO	Bet1 (Rattus norvegicus)	9068941		RGD	PMID:16735505 and REF_RGD_ID:4892613

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:Q8N6Y0	9068941	PMID:16189514	IntAct	PMID:16189514
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:P43360 more ...	9068941	PMID:25416956	IntAct	PMID:25416956
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:O14653 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:Q86V38 and UniProtKB:Q92876	9068941	PMID:32814053	IntAct	PMID:32814053
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:O14653	9068941	PMID:29568061 more ...	IntAct	PMID:29568061 more ...
Bet1	Squirrel	protein binding	enables	ISO	UniProtKB:O14653 more ...	9068941	PMID:34779586	UniProt	PMID:34779586
Bet1	Squirrel	syntaxin binding	enables	ISO	UniProtKB:Q9Z158	9068941	PMID:10930465	UniProt	PMID:10930465 and REF_RGD_ID:8553381

PMID:30032202

Bet1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	32,818,459 - 32,826,847 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936585	6,036,472 - 6,043,832 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936585	6,036,452 - 6,044,827 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BET1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	93,962,762 - 94,004,355 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	93,962,762 - 94,004,382 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	93,592,074 - 93,633,667 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	93,458,936 - 93,471,626 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	93,267,213 - 93,278,341	NCBI
Celera	7	88,319,269 - 88,331,959 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	88,228,528 - 88,241,219 (-)	NCBI		HuRef
CHM1_1	7	93,551,233 - 93,563,923 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	95,198,654 - 95,240,247 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	92,950,170 - 92,962,860 (-)	NCBI

Bet1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	4,076,899 - 4,086,930 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	4,076,899 - 4,086,972 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	4,076,899 - 4,086,998 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	4,076,899 - 4,086,972 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	4,026,904 - 4,036,927 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	4,026,904 - 4,036,927 (-)	NCBI		MGSCv36	mm8
Celera	6	4,223,554 - 4,233,571 (-)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	1.81	NCBI

Bet1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	33,070,892 - 33,081,162 (-)	NCBI		GRCr8
mRatBN7.2	4	32,116,232 - 32,126,592 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	32,116,235 - 32,126,617 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	37,088,503 - 37,099,809 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	33,014,624 - 33,025,930 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	31,385,538 - 31,396,616 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	29,082,368 - 29,092,638 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	29,082,365 - 29,092,753 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	28,992,526 - 29,002,852 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	28,941,105 - 28,951,375 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	28,959,601 - 28,970,171 (-)	NCBI
Celera	4	27,501,409 - 27,511,460 (-)	NCBI		Celera
Cytogenetic Map	4	q13	NCBI

Bet1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	10,762,903 - 10,774,780 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	10,762,973 - 10,774,744 (-)	NCBI	ChiLan1.0	ChiLan1.0

BET1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	111,835,749 - 111,846,933 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	160,100,388 - 160,111,552 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	85,947,997 - 85,959,151 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	99,508,461 - 99,550,129 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	99,539,001 - 99,550,125 (-)	Ensembl	panpan1.1		panPan2

BET1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	19,490,556 - 19,499,960 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	19,491,218 - 19,554,327 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	19,050,097 - 19,059,492 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	19,304,858 - 19,314,241 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	19,304,862 - 19,368,983 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	19,457,564 - 19,466,950 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	19,192,880 - 19,202,265 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	19,450,007 - 19,459,393 (-)	NCBI		UU_Cfam_GSD_1.0

BET1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	73,782,168 - 73,792,648 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	73,782,157 - 73,792,653 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	80,823,432 - 80,833,925 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BET1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	55,014,065 - 55,024,958 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	55,014,079 - 55,024,964 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	49,261,547 - 49,307,140 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bet1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624813	723,892 - 733,730 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624813	717,917 - 733,770 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005331823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000024476 ⟹ ENSSTOP00000020516

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936585	6,036,472 - 6,043,832 (+)	Ensembl

RefSeq Acc Id:

XM_005331823 ⟹ XP_005331880

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	32,818,459 - 32,826,847 (-)	NCBI
SpeTri2.0	NW_004936585	6,036,452 - 6,044,827 (+)	NCBI

Sequence:

show sequence

CAGCGCGGTGTTTAGGCTCCACTGATGTCGTGGCGCTTTGGGGCAAGAAGTTGGTGTTGCTCGGGCCCCTGGGACTGAAGACGAGGTCCGGGTGACTCCGGCCCTTTCCTACCCACATCTCCCTCGCT
CGCCTTTCTCTCCTTCCTCTGGCAGGATGAGGCGTGCAGGCCTGGGTGAAGGAGCACTTTCTGGCAACTATGGGAACCATGGCTATTCTCACAGTGGGTACAGTGCCTGTGAAGAAGAGAATGAGAGA
CTCACCGAGAGTCTTAGAAGCAAAGTAACTGCTATAAAATCTCTTTCCATTGAAATAGGCCATGAAGTTAAAAGTCAAAATAAGCTATTAGCTGAAATGGATTCACAATTTGATTCTACAACTGGATT
TCTAGGTAAAACTATGGGAAAACTGAAGATTTTATCCAGAGGGAGCCAAACCAAGCTGCTGTGCTATATGATGTTGTTTTCATTGTTTGTCTTTTTTGTCATTTATGGGATTATTAAACTGAGGTGAT
GCAAGTAAGCCTGAGTTTGGAATTTGTTCCAACTAATAGGATAAAGTACCACTTTGATAAAAATCAGCATCGCAACATTCCTAATTTTGAAATATTAGACCTTTTCCATTGAAGATTACTGAATTTTG
CTTGTTTTATAAATCACATTAGATAATACAGTGCTCTTTGAATACTGTTTCTTATTGACTCATTTAACCCCTATTTTCAGGGGTATTGAGATGGCCTAAAATCAGTGTTGCTCTACCAACTTTTTTTT
CCCATTGTTTGCTAGTTGTCAGATTAATATCCTGTTGTTATCATAAATGGAGGTTTATGTTCCACATAAGAAATAGTGGGAAAGTAGTAGAATGCCTGCAGAGCCTGATTCCCAGCTCTTAGGGTAGT
AAGCCAGTCTGTGATGGGATGGTAATTATATATTTCTCAGCTGTCATCAACTGGGGTAATGTATACCCCTTTTCTCCTTCATTTGGTTACAATTGGAGACTTAAGTTCTTAAGTTCTTACCTATAATC
TTAATTTTTCATCAAATTACTCTTTCCTTTCTGACTAGGACTTCCTTCTTTAATAAAGCTTGTTAATTGGGCATATGTCTGGTAGGGCCTAATCTACCGGTGTATCAACATAGTTATTGTTTTATATT
AACATAAATTCCCTTGACTTGGTTTATGGTAGTTTTATGATTTTAGCTACTTAGGCAGGCCATTTGATTATCATTTGTGACAGAATAATGTGAAGTTAAGTGATTGCTGAGCTCTGGGTAGAAATTAA
ATGTTCAAGAAAATGAATTGTCTCTGCTTTATTATGTGCTCAAAACATTGAAAATACTCAGCATTGAACTCAAGAGTTAAGAGGGGTATTAATCCAGTGCATTTGTTTATAGAAAGCTAAACACAAAG
GTGGATTGTTAAGTAAAAAAGAAATACTAAACTATTATCAAATATTCTGTATTGCTACTACTTTGGAGGTTTCAAAAATAAATTTTGTATTGAAATATGTTAA

hide sequence


Protein RefSeqs	XP_005331880	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000020516.1
GenBank Protein	KAG3277606	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005331880 ⟸ XM_005331823
- UniProtKB:	I3N820 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRAGLGEGALSGNYGNHGYSHSGYSACEEENERLTESLRSKVTAIKSLSIEIGHEVKSQNKLLAEMDSQFDSTTGFLGKTMGKLKILSRGSQTKLLCYMMLFSLFVFFVIYGIIKLR hide sequence

Ensembl Acc Id:

ENSSTOP00000020516 ⟸ ENSSTOT00000024476

Protein Domains

t-SNARE coiled-coil homology

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000028826	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000024476.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
InterPro	BET1_SNARE	UniProtKB/TrEMBL
	T_SNARE_dom	UniProtKB/TrEMBL
NCBI Gene	Bet1	ENTREZGENE
PANTHER	PTHR12791	UniProtKB/TrEMBL
PROSITE	T_SNARE	UniProtKB/TrEMBL
SMART	t_SNARE	UniProtKB/TrEMBL
Superfamily-SCOP	SNARE fusion complex	UniProtKB/TrEMBL
UniProt	I3N820	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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