Bet1 (Bet1 golgi vesicular membrane trafficking protein) - Rat Genome Database

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Gene: Bet1 (Bet1 golgi vesicular membrane trafficking protein) Ictidomys tridecemlineatus
Analyze
Symbol: Bet1
Name: Bet1 golgi vesicular membrane trafficking protein
RGD ID: 12654047
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy with Rapid Progression (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); Golgi cis cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BET1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,818,459 - 32,826,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365856,036,472 - 6,043,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365856,036,452 - 6,044,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Bet1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,818,459 - 32,826,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365856,036,472 - 6,043,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365856,036,452 - 6,044,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BET1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,962,762 - 94,004,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,962,762 - 94,004,382 (-)EnsemblGRCh38hg38GRCh38
GRCh37793,592,074 - 93,633,667 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,458,936 - 93,471,626 (-)NCBINCBI36Build 36hg18NCBI36
Build 34793,267,213 - 93,278,341NCBI
Celera788,319,269 - 88,331,959 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,228,528 - 88,241,219 (-)NCBIHuRef
CHM1_1793,551,233 - 93,563,923 (-)NCBICHM1_1
T2T-CHM13v2.0795,198,654 - 95,240,247 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,950,170 - 92,962,860 (-)NCBI
Bet1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,076,899 - 4,086,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,076,899 - 4,086,972 (-)EnsemblGRCm39 Ensembl
GRCm3864,076,899 - 4,086,998 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,076,899 - 4,086,972 (-)EnsemblGRCm38mm10GRCm38
MGSCv3764,026,904 - 4,036,927 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,026,904 - 4,036,927 (-)NCBIMGSCv36mm8
Celera64,223,554 - 4,233,571 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Bet1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,070,892 - 33,081,162 (-)NCBIGRCr8
mRatBN7.2432,116,232 - 32,126,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,116,235 - 32,126,617 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,088,503 - 37,099,809 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,014,624 - 33,025,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,385,538 - 31,396,616 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,082,368 - 29,092,638 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,082,365 - 29,092,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0428,992,526 - 29,002,852 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,941,105 - 28,951,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1428,959,601 - 28,970,171 (-)NCBI
Celera427,501,409 - 27,511,460 (-)NCBICelera
Cytogenetic Map4q13NCBI
Bet1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,762,903 - 10,774,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,762,973 - 10,774,744 (-)NCBIChiLan1.0ChiLan1.0
BET1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26111,835,749 - 111,846,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,100,388 - 160,111,552 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,947,997 - 85,959,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1799,508,461 - 99,550,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,539,001 - 99,550,125 (-)Ensemblpanpan1.1panPan2
BET1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,490,556 - 19,499,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,491,218 - 19,554,327 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,050,097 - 19,059,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,304,858 - 19,314,241 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,304,862 - 19,368,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,457,564 - 19,466,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,192,880 - 19,202,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,450,007 - 19,459,393 (-)NCBIUU_Cfam_GSD_1.0
BET1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl973,782,168 - 73,792,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1973,782,157 - 73,792,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2980,823,432 - 80,833,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BET1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,014,065 - 55,024,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,014,079 - 55,024,964 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,261,547 - 49,307,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bet1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624813723,892 - 733,730 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624813717,917 - 733,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005331823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000024476   ⟹   ENSSTOP00000020516
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365856,036,472 - 6,043,832 (+)Ensembl
RefSeq Acc Id: XM_005331823   ⟹   XP_005331880
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511832,818,459 - 32,826,847 (-)NCBI
SpeTri2.0NW_0049365856,036,452 - 6,044,827 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005331880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020516.1
GenBank Protein KAG3277606 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005331880   ⟸   XM_005331823
- UniProtKB: I3N820 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000020516   ⟸   ENSSTOT00000024476
Protein Domains
t-SNARE coiled-coil homology


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028826 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024476.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro BET1_SNARE UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
NCBI Gene Bet1 ENTREZGENE
PANTHER BET1 HOMOLOG UniProtKB/TrEMBL
  PTHR12791 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt I3N820 ENTREZGENE, UniProtKB/TrEMBL