BET1 (Bet1 golgi vesicular membrane trafficking protein) - Rat Genome Database

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Gene: BET1 (Bet1 golgi vesicular membrane trafficking protein) Canis lupus familiaris
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Symbol: BET1
Name: Bet1 golgi vesicular membrane trafficking protein
RGD ID: 12184970
Description: ENCODES a protein that exhibits syntaxin binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH Congenital Muscular Dystrophy with Rapid Progression (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); Golgi cis cisterna (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BET1 homolog; blocked early in transport 1 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,490,556 - 19,499,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,491,218 - 19,554,327 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,050,097 - 19,059,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,304,858 - 19,314,241 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,304,862 - 19,368,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,457,564 - 19,466,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,192,880 - 19,202,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,450,007 - 19,459,393 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BET1DogCOVID-19  ISOBET1 (Homo sapiens)9068941mRNA:increased expression:bronchoalveolar lavage (human)RGDPMID:32407669 and REF_RGD_ID:30296672
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BET1DogCongenital Muscular Dystrophy with Rapid Progression  ISOBET1 (Homo sapiens)8554872ClinVar Annotator: match by term: Muscular dystrophy more ...ClinVarPMID:25741868 and PMID:34779586
BET1Dogepilepsy  ISOBET1 (Homo sapiens)8554872ClinVar Annotator: match by term: SeizureClinVarPMID:25741868 and PMID:34779586
BET1Dogpleomorphic xanthoastrocytoma  ISOBET1 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BET1DogCongenital Muscular Dystrophy with Rapid Progression  ISOBET1 (Homo sapiens)7240710 OMIM 


Biological Process

  

Cellular Component
1 to 11 of 11 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BET1Dogcis-Golgi network part_ofISOBET1 (Homo sapiens)9068941 PMID:34779586UniProtPMID:34779586
BET1Dogendomembrane system located_inIEAUniProtKB-SubCell:SL-0147150520179 UniProtGO_REF:0000044
BET1Dogendoplasmic reticulum part_ofISOBET1 (Homo sapiens)9068941 PMID:34779586UniProtPMID:34779586
BET1DogGolgi apparatus located_inIEAARBA:ARBA00028708150520179 UniProtGO_REF:0000117
BET1DogGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
BET1DogGolgi cis cisterna  ISOBet1 (Rattus norvegicus)9068941MMO:0000663RGDPMID:14742712 and REF_RGD_ID:14394613
BET1DogGolgi cisterna  ISOBet1 (Rattus norvegicus)9068941 RGDPMID:8621431 and REF_RGD_ID:69776
BET1DogGolgi membrane located_inIEAUniProtKB-SubCell:SL-0134150520179 UniProtGO_REF:0000044
BET1Dogmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
BET1DogSNARE complex  ISOBet1 (Rattus norvegicus)9068941 RGDPMID:16735505 and REF_RGD_ID:4892613
BET1DogSNARE complex part_ofIBAPANTHER:PTN002654937 and Bet1 (Rattus norvegicus)150520179 GO_CentralGO_REF:0000033
1 to 11 of 11 rows

Molecular Function

  

PMID:30032202  



BET1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11419,490,556 - 19,499,960 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1419,491,218 - 19,554,327 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,050,097 - 19,059,492 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01419,304,858 - 19,314,241 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1419,304,862 - 19,368,983 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11419,457,564 - 19,466,950 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,192,880 - 19,202,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01419,450,007 - 19,459,393 (-)NCBIUU_Cfam_GSD_1.0
BET1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,962,762 - 94,004,355 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,962,762 - 94,004,382 (-)EnsemblGRCh38hg38GRCh38
GRCh37793,592,074 - 93,633,667 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36793,458,936 - 93,471,626 (-)NCBINCBI36Build 36hg18NCBI36
Build 34793,267,213 - 93,278,341NCBI
Celera788,319,269 - 88,331,959 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef788,228,528 - 88,241,219 (-)NCBIHuRef
CHM1_1793,551,233 - 93,563,923 (-)NCBICHM1_1
T2T-CHM13v2.0795,198,654 - 95,240,247 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,950,170 - 92,962,860 (-)NCBI
Bet1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,076,899 - 4,086,930 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,076,899 - 4,086,972 (-)EnsemblGRCm39 Ensembl
GRCm3864,076,899 - 4,086,998 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,076,899 - 4,086,972 (-)EnsemblGRCm38mm10GRCm38
MGSCv3764,026,904 - 4,036,927 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,026,904 - 4,036,927 (-)NCBIMGSCv36mm8
Celera64,223,554 - 4,233,571 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.81NCBI
Bet1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,070,892 - 33,081,162 (-)NCBIGRCr8
mRatBN7.2432,116,232 - 32,126,592 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl432,116,235 - 32,126,617 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,088,503 - 37,099,809 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,014,624 - 33,025,930 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0431,385,538 - 31,396,616 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,082,368 - 29,092,638 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,082,365 - 29,092,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0428,992,526 - 29,002,852 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,941,105 - 28,951,375 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1428,959,601 - 28,970,171 (-)NCBI
Celera427,501,409 - 27,511,460 (-)NCBICelera
Cytogenetic Map4q13NCBI
Bet1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,762,903 - 10,774,780 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,762,973 - 10,774,744 (-)NCBIChiLan1.0ChiLan1.0
BET1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26111,835,749 - 111,846,933 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17160,100,388 - 160,111,552 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,947,997 - 85,959,151 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1799,508,461 - 99,550,129 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl799,539,001 - 99,550,125 (-)Ensemblpanpan1.1panPan2
Bet1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,818,459 - 32,826,847 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365856,036,472 - 6,043,832 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365856,036,452 - 6,044,827 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BET1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl973,782,168 - 73,792,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1973,782,157 - 73,792,653 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2980,823,432 - 80,833,925 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BET1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,014,065 - 55,024,958 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,014,079 - 55,024,964 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604249,261,547 - 49,307,140 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bet1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624813723,892 - 733,730 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624813717,917 - 733,770 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in BET1
113 total Variants






Ensembl Acc Id: ENSCAFT00000066485   ⟹   ENSCAFP00000061996
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1419,491,248 - 19,496,267 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000081138   ⟹   ENSCAFP00000048392
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1419,491,218 - 19,554,327 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000093745   ⟹   ENSCAFP00000057752
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1419,491,506 - 19,554,322 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029193   ⟹   ENSCAFP00845022958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1419,304,862 - 19,310,565 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029226   ⟹   ENSCAFP00845022985
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1419,305,520 - 19,368,983 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845029258   ⟹   ENSCAFP00845023011
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1419,305,806 - 19,368,978 (-)Ensembl
RefSeq Acc Id: XM_038494551   ⟹   XP_038350479
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11419,457,564 - 19,466,950 (-)NCBI
RefSeq Acc Id: XM_038556836   ⟹   XP_038412764
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01419,450,007 - 19,459,393 (-)NCBI
RefSeq Acc Id: XM_038620775   ⟹   XP_038476703
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01419,192,880 - 19,202,265 (-)NCBI
RefSeq Acc Id: XM_038686461   ⟹   XP_038542389
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01419,304,858 - 19,314,241 (-)NCBI
RefSeq Acc Id: XM_532463   ⟹   XP_532463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11419,490,556 - 19,499,960 (-)NCBI
Dog10K_Boxer_Tasha1419,050,097 - 19,059,492 (-)NCBI
Sequence:
1 to 5 of 11 rows
1 to 5 of 11 rows
RefSeq Acc Id: XP_532463   ⟸   XM_532463
- UniProtKB: A0A8C0SAE2 (UniProtKB/TrEMBL),   A0A8I3NV66 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000057752   ⟸   ENSCAFT00000093745
Ensembl Acc Id: ENSCAFP00000061996   ⟸   ENSCAFT00000066485
Ensembl Acc Id: ENSCAFP00000048392   ⟸   ENSCAFT00000081138
RefSeq Acc Id: XP_038350479   ⟸   XM_038494551


1 to 29 of 29 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCAFG00000044569 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015185 UniProtKB/TrEMBL
  ENSCAFG00040011238 UniProtKB/TrEMBL
  ENSCAFG00845016464 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000066485.2 UniProtKB/TrEMBL
  ENSCAFT00000081138.2 UniProtKB/TrEMBL
  ENSCAFT00000093745.2 UniProtKB/TrEMBL
  ENSCAFT00030028098.1 UniProtKB/TrEMBL
  ENSCAFT00040020757.1 UniProtKB/TrEMBL
  ENSCAFT00040020795.1 UniProtKB/TrEMBL
  ENSCAFT00845029193.1 UniProtKB/TrEMBL
  ENSCAFT00845029226.1 UniProtKB/TrEMBL
  ENSCAFT00845029258 ENTREZGENE
  ENSCAFT00845029258.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
InterPro BET1_SNARE UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/TrEMBL
KEGG Report cfa:475231 UniProtKB/TrEMBL
NCBI Gene BET1 ENTREZGENE
PANTHER PTHR12791 UniProtKB/TrEMBL
PROSITE T_SNARE UniProtKB/TrEMBL
SMART t_SNARE UniProtKB/TrEMBL
Superfamily-SCOP SNARE fusion complex UniProtKB/TrEMBL
UniProt A0A8C0NJH4_CANLF UniProtKB/TrEMBL
  A0A8C0SAE2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NV66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P058_CANLF UniProtKB/TrEMBL
  A0A8I3RZB2_CANLF UniProtKB/TrEMBL
  A0A8P0TDR1_CANLF UniProtKB/TrEMBL
1 to 29 of 29 rows