Advanced Search (OLGA)

Gene: Lims1 (LIM zinc finger domain containing 1) Ictidomys tridecemlineatus

Subscribe to Updates

Analyze

Symbol:

Lims1

Name:

LIM zinc finger domain containing 1

RGD ID:

12653195

Description:

ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); cell-matrix adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); ectodermal dysplasia 10A (ortholog); ectodermal dysplasia 10B (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LIM and senescent cell antigen-like-containing domain protein 1; LIM zinc finger domain containing 1, transcript variant X1; LIM zinc finger domain containing 1, transcript variant X2; LIM zinc finger domain containing 1, transcript variant X3; LIM zinc finger domain containing 1, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lims1	Squirrel	autosomal dominant distal hereditary motor neuronopathy 7		ISO	RGD:1313937	8554872	ClinVar Annotator: match by term: Neuronopathy, distal hereditary motor, type 7A	ClinVar	PMID:28492532
Lims1	Squirrel	ectodermal dysplasia 10A		ISO	RGD:1313937	8554872	ClinVar Annotator: match by term: Ectodermal Dysplasia 3, Anhidrotic	ClinVar	PMID:10431241\|PMID:10431242\|PMID:18854857\|PMID:20979233\|PMID:28492532\|PMID:28981473
Lims1	Squirrel	ectodermal dysplasia 10B		ISO	RGD:1313937	8554872	ClinVar Annotator: match by term: Autosomal recessive hypohidrotic ectodermal dysplasia	ClinVar	PMID:10431241\|PMID:10431242\|PMID:18854857\|PMID:20979233\|PMID:28492532\|PMID:28981473
Lims1	Squirrel	ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3		ISO	RGD:1313937	8554872	ClinVar Annotator: match by term: ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, SUSCEPTIBILITY TO, 3	ClinVar	PMID:10431241\|PMID:10431242\|PMID:18854857\|PMID:20979233\|PMID:28492532\|PMID:28981473

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lims1	Squirrel	cell-cell adhesion	involved_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	cell-cell adhesion	acts_upstream_of_or_within	ISO	MGI:3584172\|MGI:3584173	9068941	PMID:15976450	MGI	PMID:15976450
Lims1	Squirrel	cell-cell junction organization	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:19652092	MGI	PMID:19652092
Lims1	Squirrel	cell-cell junction organization	involved_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	cell-matrix adhesion	acts_upstream_of_or_within	ISO	MGI:3584172\|MGI:3584173	9068941	PMID:15976450	MGI	PMID:15976450
Lims1	Squirrel	cellular response to transforming growth factor beta stimulus	involved_in	ISO	RGD:1313937	9068941	PMID:21390327	UniProt	PMID:21390327
Lims1	Squirrel	cholangiocyte proliferation	acts_upstream_of	ISO	MGI:2385067	9068941	PMID:24058607	MGI	PMID:24058607
Lims1	Squirrel	chordate embryonic development	acts_upstream_of_or_within	ISO	MGI:3577473	9068941	PMID:15798193	MGI	PMID:15798193
Lims1	Squirrel	epithelial to mesenchymal transition	NOT\|involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	establishment of protein localization	involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	establishment or maintenance of cell polarity	acts_upstream_of_or_within	ISO	MGI:3584172\|MGI:3584173	9068941	PMID:15976450	MGI	PMID:15976450
Lims1	Squirrel	hepatocyte apoptotic process	acts_upstream_of	ISO	MGI:2385067	9068941	PMID:24058607	MGI	PMID:24058607
Lims1	Squirrel	integrin-mediated signaling pathway	acts_upstream_of	ISO	MGI:2385067	9068941	PMID:19652092	MGI	PMID:19652092
Lims1	Squirrel	negative regulation of cholangiocyte proliferation	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:24058607	MGI	PMID:24058607
Lims1	Squirrel	negative regulation of DNA-templated transcription	involved_in	ISO	RGD:1313937	9068941	PMID:21390327	UniProt	PMID:21390327
Lims1	Squirrel	negative regulation of hepatocyte apoptotic process	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:24058607	MGI	PMID:24058607
Lims1	Squirrel	negative regulation of hepatocyte proliferation	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:24058607	MGI	PMID:24058607
Lims1	Squirrel	negative regulation of neural precursor cell proliferation	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:24719101	MGI	PMID:24719101
Lims1	Squirrel	neural precursor cell proliferation	acts_upstream_of	ISO	MGI:2385067	9068941	PMID:24719101	MGI	PMID:24719101
Lims1	Squirrel	positive regulation of canonical NF-kappaB signal transduction	involved_in	ISO	RGD:1313937	9068941	PMID:21343177	CAFA	PMID:21343177
Lims1	Squirrel	positive regulation of cell-substrate adhesion	involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	positive regulation of focal adhesion assembly	involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	positive regulation of gene expression	involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	positive regulation of GTPase activity	involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	positive regulation of integrin-mediated signaling pathway	involved_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	positive regulation of integrin-mediated signaling pathway	acts_upstream_of_or_within	ISO	MGI:2385067	9068941	PMID:19652092	MGI	PMID:19652092
Lims1	Squirrel	positive regulation of substrate adhesion-dependent cell spreading	involved_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	regulation of epithelial cell proliferation	NOT\|involved_in	ISO	RGD:1313937	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	tumor necrosis factor-mediated signaling pathway	involved_in	ISO	RGD:1313937	9068941	PMID:21343177	CAFA	PMID:21343177

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lims1	Squirrel	anchoring junction	located_in	IEA	UniProtKB-KW:KW-0965	150520179		UniProt	GO_REF:0000043
Lims1	Squirrel	cell-cell junction	located_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	cytoplasm	located_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	focal adhesion	located_in	IEA	InterPro:IPR047946	150520179		InterPro	GO_REF:0000002
Lims1	Squirrel	focal adhesion	located_in	IEA	PANTHER:PTN009084992\|PANTHER:PTN009085006	150520179		TreeGrafter	GO_REF:0000118
Lims1	Squirrel	focal adhesion	located_in	IEA	UniRule:UR000380773	150520179		UniProt	GO_REF:0000104
Lims1	Squirrel	focal adhesion	located_in	IEA	UniProtKB-SubCell:SL-0118	150520179		UniProt	GO_REF:0000044
Lims1	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Lims1	Squirrel	perinuclear region of cytoplasm	located_in	ISO	RGD:1313937	9068941	PMID:21390327	UniProt	PMID:21390327
Lims1	Squirrel	plasma membrane	located_in	IEA	UniProtKB-KW:KW-1003	150520179		UniProt	GO_REF:0000043
Lims1	Squirrel	plasma membrane	located_in	IEA	UniProtKB-SubCell:SL-0039	150520179		UniProt	GO_REF:0000044
Lims1	Squirrel	plasma membrane	located_in	IEA	UniRule:UR000380773	150520179		UniProt	GO_REF:0000104
Lims1	Squirrel	protein-containing complex		ISO	RGD:1560732	9068941		RGD	PMID:17167118\|PMID:17934340\|REF_RGD_ID:2301743\|REF_RGD_ID:2302524

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lims1	Squirrel	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
Lims1	Squirrel	protein binding	enables	ISO	PR:P20065	9068941	PMID:15565145	MGI	PMID:15565145
Lims1	Squirrel	protein binding	enables	ISO	PR:O55222\|PR:Q9EPC1	9068941	PMID:12432066	MGI	PMID:12432066
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:Q15404	9068941	PMID:20926685, PMID:29892012	UniProt	PMID:20926685\|PMID:29892012
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:O55222	9068941	PMID:12432066	IntAct	PMID:12432066
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:O43639\|UniProtKB:O55222	9068941	PMID:10574708	IntAct	PMID:10574708
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:O43639	9068941	PMID:15721255	IntAct	PMID:15721255
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:O55222\|UniProtKB:Q13418	9068941	PMID:11331308	IntAct	PMID:11331308
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:P19544	9068941	PMID:21390327	UniProt	PMID:21390327
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:Q13418\|UniProtKB:Q15404	9068941	PMID:23414517, PMID:25416956, PMID:28514442, PMID:33961781	IntAct	PMID:23414517\|PMID:25416956\|PMID:28514442\|PMID:33961781
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:Q13418	9068941	PMID:18339839, PMID:19074270, PMID:23455922, PMID:23877428, PMID:25852190, PMID:31515488, PMID:32707033, PMID:35271311	IntAct	PMID:18339839\|PMID:19074270\|PMID:23455922\|PMID:23877428\|PMID:25852190\|PMID:31515488\|PMID:32707033\|PMID:35271311
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:O75771\|UniProtKB:P27658\|UniProtKB:P55040\|UniProtKB:Q13418\|UniProtKB:Q15560\|UniProtKB:Q2TBE0\|UniProtKB:Q5T749\|UniProtKB:Q86VK4-3\|UniProtKB:Q86YD7\|UniProtKB:Q8NEC5\|UniProtKB:Q8TAP4-4\|UniProtKB:Q8TAU3\|UniProtKB:Q8TBZ8\|UniProtKB:Q96JP2\|UniProtKB:Q96SQ5\|UniProtKB:Q9BWG6\|UniProtKB:Q9C086\|UniProtKB:Q9NU19\|UniProtKB:Q9NZV7	9068941	PMID:32296183	IntAct	PMID:32296183
Lims1	Squirrel	protein binding	enables	ISO	UniProtKB:P09022	9068941	PMID:23088713	IntAct	PMID:23088713
Lims1	Squirrel	protein kinase binding	enables	ISO	UniProtKB:Q13418	9068941	PMID:20926685	UniProt	PMID:20926685
Lims1	Squirrel	protein-containing complex binding		ISO	RGD:620063\|RGD:71021	9068941	heterooligomerization	RGD	PMID:17934340\|REF_RGD_ID:2301743
Lims1	Squirrel	protein-containing complex binding		ISO	RGD:1560732	9068941	heterooligomerization	RGD	PMID:17167118\|REF_RGD_ID:2302524
Lims1	Squirrel	zinc ion binding	enables	ISO	RGD:1313937	9068941	PMID:19074270	UniProt	PMID:19074270

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Lims1	Squirrel	integrin mediated signaling pathway		ISO	RGD:1313937	9068941		RGD	PMID:16493410\|REF_RGD_ID:2300344

PMID:22301074	PMID:30032202

Lims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMS1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	108,533,671 - 108,687,246 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	108,533,671 - 108,687,246 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	109,150,127 - 109,303,702 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	108,571,199 - 108,667,321 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	108,663,284 - 108,759,405	NCBI
Celera	2	103,464,751 - 103,615,238 (+)	NCBI		Celera
Cytogenetic Map	2	q12.3	NCBI
HuRef	2	102,803,913 - 102,903,724 (+)	NCBI		HuRef
CHM1_1	2	109,154,977 - 109,307,968 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	108,994,291 - 109,147,842 (+)	NCBI		T2T-CHM13v2.0

Lims1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	58,159,164 - 58,260,513 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	58,159,288 - 58,260,513 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	58,323,342 - 58,424,691 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	58,323,466 - 58,424,691 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	57,786,295 - 57,887,437 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	57,718,904 - 57,820,046 (+)	NCBI		MGSCv36	mm8
Celera	10	59,061,688 - 59,162,733 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.31	NCBI

Lims1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	26,851,364 - 26,961,607 (+)	NCBI		GRCr8
mRatBN7.2	20	26,309,833 - 26,418,511 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	26,309,895 - 26,418,500 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	27,370,767 - 27,418,134 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	26,757,119 - 26,804,483 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	27,505,048 - 27,552,462 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	27,895,981 - 28,004,767 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	27,954,433 - 28,002,082 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	29,715,580 - 29,824,252 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	37,349,188 - 37,397,427 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	20	27,819,971 - 27,867,155 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

Lims1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955470	12,142,997 - 12,158,273 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	20,662,566 - 20,817,774 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	20,665,357 - 20,820,538 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	94,739,338 - 94,928,835 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	109,847,189 - 109,890,827 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

LIMS1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	35,192,582 - 35,339,100 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	35,115,177 - 35,261,730 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	36,045,342 - 36,192,076 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	36,045,345 - 36,192,039 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	35,774,284 - 35,920,701 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	36,057,448 - 36,204,222 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	36,249,779 - 36,396,408 (-)	NCBI		UU_Cfam_GSD_1.0

LIMS1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	47,606,230 - 47,672,884 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	47,607,737 - 47,704,921 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	49,748,396 - 49,812,059 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMS1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	12,059,347 - 12,210,779 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	12,059,411 - 12,213,064 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666080	7,500,757 - 7,651,520 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lims1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	11,720,492 - 11,846,571 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005340933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005340934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040270885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010001352	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005340933 ⟹ XP_005340990

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI
SpeTri2.0	NW_004936829	214,277 - 240,213 (+)	NCBI

Sequence:

show sequence

TGCCACTATTCTGTGGAATGTTTTCTAGAACTTCTAGAAACCCTCAGTAAATCCAGTCTGCTGTGCCCCGTAATGCTCTGCTACCGAGCTCTTAACATGAAGTGTTGGTAGCCACCCTGGCCAGCCAG
GCTGACGTGCGTGGGAACAGTGGGAGTGACCCTGGCTAGGAAGCTGGGAGGCCTGGATATTGTTTCTCCTGTCTCTGCTTCCTGCTGCTCTCGTCCTGAGCTCTGTGCTCCTCAGTACCCATGATGGC
CTTCCCAGGCCGAGCTCGCCCCTGTGCTATTCCAGAGAAAGAAGAAATCCCCCGGACTGTTCTTAACAGTGTCCAGGAGGCTAATGGGAATGAAGACGAGAGAGCTGTGTCCAAACTGCAGCGCAGAC
AGAGTGATATAAAAGTCTACAAGGAGTTTTGTGACTTTTATGCGAAATTCAACATGGCCAATGCCCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAAC
AGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAGAAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGC
TCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCA
AGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAAATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCT
TACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGCTGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTG
CCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTTGTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCAT
ATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGAAGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGC
AACACCAAGTTAACACTCAAGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAGTGCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAG
GAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGTTGATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCAT
CTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTTGCCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACATGGTTAA
ATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCTTTTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCTA
TTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCAAGCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAGAACTACT
TGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGTGAACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAAT
TTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATAAAGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCAA
ATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGATTGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCCA
CCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTATAATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTTT
AATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTGAGATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGAG
AAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTTTCCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAAT
AGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTATTCTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTATA
TAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCAAGATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATAA
AGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGATCATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTAG
TGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAAGATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGTG
TGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATACTATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACATTAGAAA
TATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCTTTGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTCT
TGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCAGGTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGAA
CAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_005340934 ⟹ XP_005340991

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,210,709 (-)	NCBI
SpeTri2.0	NW_004936829	187,234 - 240,213 (+)	NCBI

Sequence:

show sequence

ATAAATGCTTTAAAGTGTCAGTAATTGATGTATGTGGAGAGAACTATGACTGCTTTACAGCTTA
AAGAGCTTTCACATTCAGGGCTCTACAGGAGAAGACGAGAGCGTCCTGATAGTTTGAAACTAAATGGGCTACCGGAGGAAGAGCTAAGCAACATGGCCAATGCCCTGGCCAGCGCCACTTGTGAGCGC
TGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAACAGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAGAAGGGCTCTTCTATGAGTTTGAAGG
AAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGCTCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCTGAGTGCTTCCGCTGTG
ACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCAAGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAAATACATCTGCCAGAAGTGCCATGCC
ATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGCTGAAAGGGGAACTATACTGCCTGCC
ATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTGCCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTTGTTTGTGCCAAGTGTGAGAAACCAT
TTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCATATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGAAGGTGATGTGGTCTCTGCCCTTAAC
AAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGCAACACCAAGTTAACACTCAAGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAGTGCTATGAGAAGTTTCCACTGGAGCT
GAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAGGAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGTTGATCCACCCTTATTTAAAACTGTGT
ATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCATCTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTTGCCTATTCACCCATATTAGTTTATTG
ACATTTTGACTATATAGCAAAAAAAACCCACATGGTTAAATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCTTTTACCTGACTCAATTTTTTTTTTAA
ACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCTATTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCAAGCTGGTAGCTATAAAATGAGTATAC
ACATTACCAAGACAAGAAACAAGAGTATTCAGAACTACTTGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGTGAACTCTTCCTCTCTATAATTTACTT
GATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAATTTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATAAAGTTTTTTTAACGCGTTACATCAAT
TATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCAAATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGATTGGGGATGCAGCTCAGCGGGAGAGC
ACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCCACCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTATAATCATGCTAATACATACGCTTCGT
ACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTTTAATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTGAGATTGGTAAACTCAAATTCACTTAT
CACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGAGAAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTTTCCATCTCAAATCTCAAGATCAATTG
GATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAATAGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTATTCTATTTTATTTAAAAAAATTATCCT
GAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTATATAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCAAGATAGACCTCTAGAAGGAAATTACC
GGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATAAAGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGATCATGCATATTATAGAATAAATTCTA
TTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTAGTGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAAGATTGTATGTGCTCAGTAGTTTAAAA
CAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGTGTGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATACTATGCATATAGGCAAAATAGGACAGT
TTATACTATAGGGTCTTGTATATACCCCTACATTAGAAATATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCTTTGCATATGCTAGTCAAGTGCTGTAA
CATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTCTTGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCAGGTGCCTCCGATAGCCAGAGGCCCAC
TGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGAACAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_013365506 ⟹ XP_013220960

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,183,595 (-)	NCBI
SpeTri2.0	NW_004936829	214,277 - 240,213 (+)	NCBI

Sequence:

show sequence

TGCCACTATTCTGTGGAATGTTTTCTAGAACTTCTAGAAACCCTCAGTAAATCCAGTCTGCTGTGCCCCGTAATGCTCTGCTACCGAGCTCTTAACATGAAGTGTTGGTAGCCACCCTGGCCAGCCAG
GCTGACGTGCGTGGGAACAGTGGGAGTGACCCTGGCTAGGAAGCTGGGAGGCCTGGATATTGTTTCTCCTGTCTCTGCTTCCTGCTGCTCTCGTCCTGAGCTCTGTGCTCCTCAGTACCCATGATGGC
CTTCCCAGGCCGAGCTCGCCCCTGTGCTATTCCAGAGAAAGAAGAAATCCCCCGGACTGTTCTTAACAGTGTCCAGGAGGCTAATGGGAATGAAGACGAGAGAGCTGTGTCCAAACTGCAGCGCAGAC
AGAGTGATATAAAAGTCTACAAGGAGTTTTGTGACTTTTATGCGAAATTCAACATGGCCAATGCCCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAAC
AGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGTTCCCAGAAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGC
TCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAATAACAGCTGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCA
AGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCTTGGAAAATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCT
TACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCCGGGAGCTGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTG
CCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAGCATTTTGTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCAT
ATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGTTATAGAAGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGC
AACACCAAGTTAACACTCAAGGATAAGTTTGTTGAAATTGATCTAAAACCAGTCTGCAAACACTGTTATGAGAAAATGCCAGAAGAATTTAAGAGGCGACTTGCCAAACGGGAGAGAGAAGCAAAGGA
TAAGGACAAGCAGAAAAAGAAAAAGCCAGTCTGTTTGTAAACTTTTCTGTCCCTTCTATCATCATTTTCACTACTTTCTTCTTTGGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAG
TGCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCTTAGGAAGGAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGT
TGATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTTTCTTCATCTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTT
GCCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACATGGTTAAATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCT
TTTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCCACTGCTATTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCA
AGCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAGAACTACTTGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGT
GAACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACATTTAAATTTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATA
AAGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTATTCTTCAAATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGA
TTGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAAGTCCCCACCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTA
TAATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAATACACTTTAATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTG
AGATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAATTTTGGAGAAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTT
TCCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATTATAAAATAGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTAT
TCTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACTTGTTATATAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCA
AGATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTTGCCATAAAGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGA
TCATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTATTTTTTAGTGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAA
GATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCCATTGGTGTGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATAC
TATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACATTAGAAATATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCT
TTGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGTATATTCTTGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCA
GGTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATATGAATGAACAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_021720614 ⟹ XP_021576289

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,182,983 (-)	NCBI
SpeTri2.0	NW_004936829	214,841 - 240,213 (+)	NCBI

Sequence:

show sequence

CCGAGGGTGACCCACAATGCAGCGTATTCCAGGGAGGCAAACAGGTTGCCTTGTCATGTAGAGCTTGTGCTGGAGGACACACAGAGATGAAGGAAAGTGCTGTCTTCACAGGAAGAGTACAACATGGC
CAATGCCCTGGCCAGCGCCACTTGTGAGCGCTGCAAGGGAGGCTTTGCACCTGCTGAGAAGATCGTGAACAGTAACGGCGAGCTATACCATGAGCAGTGTTTCGTGTGTGCGCAGTGCTTCCAGCAGT
TCCCAGAAGGGCTCTTCTATGAGTTTGAAGGAAGGAAATATTGTGAACATGATTTTCAGATGCTCTTTGCTCCTTGCTGCCATCAGTGTGGTGAGTTCATCATTGGCCGAGTTATCAAAGCCATGAAT
AACAGCTGGCATCCTGAGTGCTTCCGCTGTGACCTCTGCCAGGAAGTTCTGGCAGACATTGGATTTGTCAAGAATGCTGGCAGACATTTATGTCGCCCCTGTCATAATCGTGAGAAAGCCAGAGGCCT
TGGAAAATACATCTGCCAGAAGTGCCATGCCATCATTGACGAACAGCCTTTGATCTTCAAGAATGACCCTTACCACCCAGACCACTTCAACTGTGCCAACTGCGGGAAAGAGCTGACTGCTGATGCCC
GGGAGCTGAAAGGGGAACTATACTGCCTGCCATGTCATGATAAGATGGGAGTCCCCATCTGTGGTGCCTGCCGGCGACCCATTGAGGGACGAGTAGTAAATGCCATGGGTAAACAGTGGCATGTGGAG
CATTTTGTTTGTGCCAAGTGTGAGAAACCATTTCTTGGACATCGCCATTATGAGAGGAAGGGCTTGGCATATTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGT
TATAGAAGGTGATGTGGTCTCTGCCCTTAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGTTCCACCTGCAACACCAAGTTAACACTCAAGGATAAGTTTGTTGAAATTGATCTAAAACCAGTCTGCA
AACACTGTTATGAGAAAATGCCAGAAGAATTTAAGAGGCGACTTGCCAAACGGGAGAGAGAAGCAAAGGATAAGGACAAGCAGAAAAAGAAAAAGCCAGTCTGTTTGTAAACTTTTCTGTCCCTTCTA
TCATCATTTTCACTACTTTCTTCTTTGGAATAAATTTGTGGAGTTTGACATGAAGCCAGTCTGTAAAAAGTGCTATGAGAAGTTTCCACTGGAGCTGAAGAAAAGACTTAAGAAACTAGCTGAGACCT
TAGGAAGGAAATAACTTCATTATACTTTTTCTTTTCTATACAAAGATGAGATTACCAATGTTACTTGAGTTGATCCACCCTTATTTAAAACTGTGTATTGCAAAGCTGTTGAGAGTTAAGAATAGTTT
TCTTCATCTCTTCTGTCTCATTCAAAAAGTAATATAATCATGTTTAAAACACGGATGGAAATTAAGATTTGCCTATTCACCCATATTAGTTTATTGACATTTTGACTATATAGCAAAAAAAACCCACA
TGGTTAAATGTTAAATTTTAATTAAGGTTCCAAAGTGATGCATAACTGTGCAAAATGAAAGGAGTGGGCTTTTACCTGACTCAATTTTTTTTTTAAACAAATAAACTTTGTGGTCAAAATTGCCTCCC
ACTGCTATTGGAGAGGATATTGGGAAGAAAAATGACCACCCAAGAAAAGCAAATCTTAGTATGTTTATCAAGCTGGTAGCTATAAAATGAGTATACACATTACCAAGACAAGAAACAAGAGTATTCAG
AACTACTTGATTTTTTTTTTTTTTTTGGTAAATGCAATAATTATTATGCTTACTTTTCTATTTTGTTTGTGAACTCTTCCTCTCTATAATTTACTTGATACATAGTTGTAGCTAGCTAGTAGTATACA
TTTAAATTTTTCTGGAAAAAAATGACACCAGGTATCTGAAAATACAACATACTTTATAATATTAAAAATAAAGTTTTTTTAACGCGTTACATCAATTATGCTTCTAAGCTTAATGTCAAAACACGTAT
TCTTCAAATAGGATATGAAATTAAATTTATGTAGCTTGGAATGTATCACTTAAGAAAAGTGAATGTGGGATTGGGGATGCAGCTCAGCGGGAGAGCACTTGCCTTGCATGCATGAGGCCTTGGATTAA
GTCCCCACCACTGCAAAAAAAGAAGGAGAAAAAAAAAGGATGTGTATGTATTGGTCATATATTTCCTTTATAATCATGCTAATACATACGCTTCGTACATAATCAAACTTGCTTTGCCTTAGAAAAAT
ACACTTTAATCAGGAATTATAGCTATTTCATATAATACCAACTAAAAGCTAAAAATAAGTGCATTGTCTGAGATTGGTAAACTCAAATTCACTTATCACAGTTAACTTAAAAAGTTTTTTCCCTCAAT
TTTGGAGAAAGCCTATAGATATCAATTCCCGTCATCTTATTAGACAAGAATGATGTTTATGTTCAGGTTTTCCATCTCAAATCTCAAGATCAATTGGATTTATCTACTGTAAGTAGGAGGTATAAATT
ATAAAATAGTACTCTTAAACTGCAAGAGGGATGTTTTAATATCACTTTTAGGTCAAAATTAGTGAATTATTCTATTTTATTTAAAAAAATTATCCTGAAATTTCTGGTCCTTTCTTTTTGGATAAACT
TGTTATATAAAGCTTTATGAACATTTTAAAAATGTTACTGCTGCTGTATTATTTAAAAGGAAAGTTGCCAAGATAGACCTCTAGAAGGAAATTACCGGTTTTTCAAAAAATTGCTGACATATTGCTTT
GCCATAAAGAATATCTCAGGATGCTACCACTCTGCCATTAAAATGTTGTTATGCATGAAGTAAATTTTGATCATGCATATTATAGAATAAATTCTATTTCTGTTTTTGATAACTTTTAACCAATTTAT
TTTTTAGTGTTCTTTTAGAGATAAAAGAATTATAAATGATCAAAAATAAATAATCAGTATATCATTGTAAGATTGTATGTGCTCAGTAGTTTAAAACAATCTTTGCATTTGACTAGAATCAAAATCCC
ATTGGTGTGCCTTTGTCAGCTAATAATGACCAGCAATGAAAACCTTGAAAGTATTTATTAAATATTATACTATGCATATAGGCAAAATAGGACAGTTTATACTATAGGGTCTTGTATATACCCCTACA
TTAGAAATATGGATCAGAAAAGCAAGCTTTTGTATGTGTGTTTATGGTACTAGGGATTGAATCCAGTGCTTTGCATATGCTAGTCAAGTGCTGTAACATTGAATTCCATTTCCAGCCCTCCTTTATGT
ATATTCTTGATCACTCTGAAGATGTGTGGACTGAACTCTCTTGCCTTTGTTTACAAGTCATACATAGCCAGGTGCCTCCGATAGCCAGAGGCCCACTGCTGTCTTCGCTTAGTCCTCCTTTAAAATAT
GAATGAACAATATTTCCCAAAGTTCAACTTATTAGGCCTCTAGTA

hide sequence

RefSeq Acc Id:

XM_040270883 ⟹ XP_040126817

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI

RefSeq Acc Id:

XM_040270884 ⟹ XP_040126818

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,157,129 - 92,183,595 (-)	NCBI

RefSeq Acc Id:

XM_040270885 ⟹ XP_040126819

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024406292	92,159,856 - 92,210,709 (-)	NCBI


Protein RefSeqs	XP_005340990	(Get FASTA)	NCBI Sequence Viewer
	XP_005340991	(Get FASTA)	NCBI Sequence Viewer
	XP_013220960	(Get FASTA)	NCBI Sequence Viewer
	XP_021576289	(Get FASTA)	NCBI Sequence Viewer
	XP_040126817	(Get FASTA)	NCBI Sequence Viewer
	XP_040126818	(Get FASTA)	NCBI Sequence Viewer
	XP_040126819	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014072.2
	ENSSTOP00000021358.2
GenBank Protein	KAG3268173	(Get FASTA)	NCBI Sequence Viewer
	KAG3268174	(Get FASTA)	NCBI Sequence Viewer
	KAG3268175	(Get FASTA)	NCBI Sequence Viewer
	KAG3268176	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005340991 ⟸ XM_005340934
- Peptide Label:	isoform X6
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYVERTMTALQLKELSHSGLYRRRRERPDSLKLNGLPEEELSNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKA MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWH VEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAETLGRK hide sequence

RefSeq Acc Id:	XP_005340990 ⟸ XM_005340933
- Peptide Label:	isoform X4
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAFPGRARPCAIPEKEEIPRTVLNSVQEANGNEDERAVSKLQRRQSDIKVYKEFCDFYAKFNMANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM LFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPIC GACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKKRLKKLAET LGRK hide sequence

RefSeq Acc Id:	XP_013220960 ⟸ XM_013365506
- Peptide Label:	isoform X1
- UniProtKB:	I3NAG1 (UniProtKB/TrEMBL), I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAFPGRARPCAIPEKEEIPRTVLNSVQEANGNEDERAVSKLQRRQSDIKVYKEFCDFYAKFNM ANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARG LGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNR VIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL hide sequence

RefSeq Acc Id:	XP_021576289 ⟸ XM_021720614
- Peptide Label:	isoform X7
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAR GLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCN RVIEGDVVSALNKAWCVSCFACSTCNTKLTLKDKFVEIDLKPVCKHCYEKMPEEFKRRLAKREREAKDKDKQKKKKPVCL hide sequence

RefSeq Acc Id:	XP_040126817 ⟸ XM_040270883
- Peptide Label:	isoform X2
- UniProtKB:	I3MQ88 (UniProtKB/TrEMBL)

Protein Domains

LIM zinc-binding

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015716	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015721.3	UniProtKB/TrEMBL
	ENSSTOT00000028573.2	UniProtKB/TrEMBL
Gene3D-CATH	Cysteine Rich Protein	UniProtKB/TrEMBL
InterPro	LIMS1/2-like_LIM1	UniProtKB/TrEMBL
	PINCH-1-4-like	UniProtKB/TrEMBL
	PINCH-1/2-like	UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/TrEMBL
NCBI Gene	Lims1	ENTREZGENE
PANTHER	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN	UniProtKB/TrEMBL
	LIM AND SENESCENT CELL ANTIGEN-LIKE-CONTAINING DOMAIN PROTEIN 1	UniProtKB/TrEMBL
	PTHR24210	UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/TrEMBL
PIRSF	PINCH	UniProtKB/TrEMBL
PROSITE	LIM_DOMAIN_1	UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/TrEMBL
SMART	LIM	UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/TrEMBL
UniProt	I3MQ88	ENTREZGENE, UniProtKB/TrEMBL
	I3NAG1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar

RGD Manual Annotations