Lims1 (LIM and senescent cell antigen-like domains 1) - Rat Genome Database

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Gene: Lims1 (LIM and senescent cell antigen-like domains 1) Mus musculus
Analyze
Symbol: Lims1
Name: LIM and senescent cell antigen-like domains 1
RGD ID: 1313938
MGI Page MGI
Description: Predicted to have protein kinase binding activity and zinc ion binding activity. Involved in several processes, including cell-matrix adhesion; negative regulation of cell population proliferation; and positive regulation of integrin-mediated signaling pathway. Localizes to focal adhesion. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and liver and biliary system. Orthologous to human LIMS1 (LIM zinc finger domain containing 1); PARTICIPATES IN integrin mediated signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 2310016J22Rik; 4921524A02Rik; AI507642; AU021743; AW551584; C430041B13Rik; Li; LIM and senescent cell antigen-like domains 1-like; LIM and senescent cell antigen-like-containing domain protein 1; Lims1l; particularly interesting new Cys-His protein 1; PIN; PINCH; PINCH-1; PINCH1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,159,164 - 58,260,513 (+)NCBIGRCm39mm39
GRCm39 Ensembl1058,159,288 - 58,260,513 (+)Ensembl
GRCm381058,323,342 - 58,424,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,323,466 - 58,424,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,786,295 - 57,887,437 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,718,904 - 57,820,046 (+)NCBImm8
Celera1059,061,688 - 59,162,733 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:7517666   PMID:8889548   PMID:9763658   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11237772   PMID:11386759   PMID:11544199   PMID:12432066   PMID:12466305  
PMID:12477932   PMID:12520002   PMID:12651156   PMID:14610273   PMID:15489334   PMID:15565145   PMID:15782199   PMID:15798193   PMID:15872073   PMID:15878342   PMID:15976450   PMID:16141072  
PMID:16141073   PMID:16170337   PMID:16317048   PMID:16602821   PMID:17047147   PMID:17272814   PMID:17878168   PMID:17967808   PMID:18287559   PMID:18799693   PMID:19349584   PMID:19435803  
PMID:19652092   PMID:19829382   PMID:20164304   PMID:20412781   PMID:20530873   PMID:20927395   PMID:20932939   PMID:21267068   PMID:21278135   PMID:21873635   PMID:22083510   PMID:22922362  
PMID:22946061   PMID:23554879   PMID:23612611   PMID:23658024   PMID:24058607   PMID:24457600   PMID:24719101   PMID:24952961   PMID:25609703   PMID:27113764   PMID:28546219   PMID:30134070  
PMID:31723057   PMID:31801973   PMID:33004813  


Genomics

Comparative Map Data
Lims1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391058,159,164 - 58,260,513 (+)NCBIGRCm39mm39
GRCm39 Ensembl1058,159,288 - 58,260,513 (+)Ensembl
GRCm381058,323,342 - 58,424,691 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1058,323,466 - 58,424,691 (+)EnsemblGRCm38mm10GRCm38
MGSCv371057,786,295 - 57,887,437 (+)NCBIGRCm37mm9NCBIm37
MGSCv361057,718,904 - 57,820,046 (+)NCBImm8
Celera1059,061,688 - 59,162,733 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.31NCBI
LIMS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2108,534,355 - 108,687,246 (+)EnsemblGRCh38hg38GRCh38
GRCh382108,533,671 - 108,687,246 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372109,150,127 - 109,303,702 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,571,199 - 108,667,321 (+)NCBINCBI36hg18NCBI36
Build 342108,663,284 - 108,759,405NCBI
Celera2103,464,751 - 103,615,238 (+)NCBI
Cytogenetic Map2q12.3NCBI
HuRef2102,803,913 - 102,903,724 (+)NCBIHuRef
CHM1_12109,154,977 - 109,307,968 (+)NCBICHM1_1
Lims1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22026,309,833 - 26,418,511 (+)NCBI
Rnor_6.0 Ensembl2027,954,433 - 28,002,082 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02027,895,981 - 28,004,767 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02029,715,580 - 29,824,252 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42037,349,188 - 37,397,427 (-)NCBIRGSC3.4rn4RGSC3.4
Celera2027,819,971 - 27,867,155 (+)NCBICelera
Cytogenetic Map20q11NCBI
Lims1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495547012,142,997 - 12,158,273 (+)NCBIChiLan1.0ChiLan1.0
LIMS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A109,847,189 - 109,890,827 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A94,739,338 - 94,928,835 (+)NCBIMhudiblu_PPA_v0panPan3
LIMS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,192,582 - 35,339,100 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,115,177 - 35,261,730 (-)NCBI
ROS_Cfam_1.01036,045,342 - 36,192,076 (-)NCBI
UMICH_Zoey_3.11035,774,284 - 35,920,701 (-)NCBI
UNSW_CanFamBas_1.01036,057,448 - 36,204,222 (-)NCBI
UU_Cfam_GSD_1.01036,249,779 - 36,396,408 (-)NCBI
Lims1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629292,157,129 - 92,210,709 (-)NCBI
SpeTri2.0NW_004936829187,234 - 240,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LIMS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1347,607,737 - 47,704,921 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2349,748,396 - 49,812,059 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LIMS1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11412,059,347 - 12,210,779 (+)NCBI
ChlSab1.1 Ensembl1412,059,411 - 12,213,064 (+)Ensembl
Lims1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474911,720,492 - 11,846,571 (+)NCBI

Position Markers
Lims1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
AU021743  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,424,397 - 58,424,596UniSTSGRCm38
MGSCv371057,887,145 - 57,887,344UniSTSGRCm37
Celera1059,162,441 - 59,162,640UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
Whitehead/MRC_RH10649.28UniSTS
AI507642  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,422,431 - 58,422,538UniSTSGRCm38
MGSCv371057,885,179 - 57,885,286UniSTSGRCm37
Celera1059,160,475 - 59,160,582UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
Whitehead/MRC_RH10650.54UniSTS
AW551584  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,424,105 - 58,424,214UniSTSGRCm38
MGSCv371057,886,853 - 57,886,962UniSTSGRCm37
Celera1059,162,149 - 59,162,258UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
Whitehead/MRC_RH10649.6UniSTS
UniSTS:236355  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,424,450 - 58,424,667UniSTSGRCm38
MGSCv371057,887,198 - 57,887,415UniSTSGRCm37
Celera1059,162,494 - 59,162,711UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
UniSTS:224541  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,369,821 - 58,369,972UniSTSGRCm38
MGSCv371057,832,569 - 57,832,720UniSTSGRCm37
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS
Lims1l  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381058,421,481 - 58,421,628UniSTSGRCm38
MGSCv371057,884,229 - 57,884,376UniSTSGRCm37
Celera1059,159,525 - 59,159,672UniSTS
Cytogenetic Map10B4UniSTS
cM Map1030.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302092Ath11_matherosclerosis 11 (mouse)Not determined10620194558857699Mouse
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
1301003Lmblgq4_mlimb length QTL 4 (mouse)Not determined102171529368255809Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
1300898Cfid_mcystic fibrosis intestinal distress (mouse)Not determined102984430763844387Mouse
10045632Heal16_mwound healing/regeneration 16 (mouse)Not determined103109840365098534Mouse
1357558Bmch4_mbone mechanical trait 4 (mouse)Not determined103170104065701188Mouse
27095920Pglq9_mpelvic girdle length QTL 9, 10 week (mouse)103390000071000000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
4141070Ltgq1_mliver triglyceride QTL 1 (mouse)Not determined4140150475401504Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884421Cvht5_mcranial vault height 5, 10 week (mouse)104570000069300000Mouse
26884400Huml5_mhumerus length 5, 16 week (mouse)104640000069400000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
4141159Phl2_mprogressive hearing loss 2 (mouse)Not determined104809840370276821Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
12904011Cfq11_mconditioned fear QTL 11 (mouse)105660406061105062Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1167
Count of miRNA genes:574
Interacting mature miRNAs:710
Transcripts:ENSMUST00000020077, ENSMUST00000020078, ENSMUST00000105468, ENSMUST00000124312, ENSMUST00000148799
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001193303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001346676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_201242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006513074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036155505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA989985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC155323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW493431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ554039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY210263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY714471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN461732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN525761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ003608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU122953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU122954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000020077   ⟹   ENSMUSP00000020077
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,394,373 - 58,421,783 (+)Ensembl
RefSeq Acc Id: ENSMUST00000020078   ⟹   ENSMUSP00000020078
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,323,466 - 58,424,691 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105468   ⟹   ENSMUSP00000101108
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,394,388 - 58,421,578 (+)Ensembl
RefSeq Acc Id: ENSMUST00000124312
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,408,057 - 58,410,336 (+)Ensembl
RefSeq Acc Id: ENSMUST00000148799
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,416,643 - 58,421,664 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238939   ⟹   ENSMUSP00000158997
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1058,371,454 - 58,424,691 (+)Ensembl
RefSeq Acc Id: NM_001193303   ⟹   NP_001180232
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,230,195 - 58,260,513 (+)NCBI
GRCm381058,394,373 - 58,424,691 (+)NCBI
Celera1059,061,607 - 59,162,735 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001346676   ⟹   NP_001333605
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,230,195 - 58,260,513 (+)NCBI
GRCm381058,394,373 - 58,424,691 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359115   ⟹   NP_001346044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,159,369 - 58,260,513 (+)NCBI
GRCm381058,323,547 - 58,424,691 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359116   ⟹   NP_001346045
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,187,785 - 58,260,513 (+)NCBI
GRCm381058,351,963 - 58,424,691 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026148   ⟹   NP_080424
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,159,369 - 58,260,513 (+)NCBI
GRCm381058,323,547 - 58,424,691 (+)NCBI
MGSCv371057,786,295 - 57,887,437 (+)RGD
Celera1059,061,607 - 59,162,735 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_201242   ⟹   NP_957694
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,207,276 - 58,260,513 (+)NCBI
GRCm381058,371,454 - 58,424,691 (+)NCBI
Celera1059,061,607 - 59,162,735 (+)ENTREZGENE
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006513068   ⟹   XP_006513131
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,229,962 - 58,260,511 (+)NCBI
GRCm381058,394,140 - 58,424,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513070   ⟹   XP_006513133
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,207,139 - 58,260,511 (+)NCBI
GRCm381058,371,262 - 58,424,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513072   ⟹   XP_006513135
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,186,869 - 58,260,511 (+)NCBI
GRCm381058,351,047 - 58,424,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006513074   ⟹   XP_006513137
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,228,326 - 58,242,023 (+)NCBI
GRCm381058,392,502 - 58,406,201 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030244824   ⟹   XP_030100684
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,159,164 - 58,260,511 (+)NCBI
GRCm381058,323,342 - 58,424,689 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036155504   ⟹   XP_036011397
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,159,401 - 58,260,511 (+)NCBI
RefSeq Acc Id: XM_036155505   ⟹   XP_036011398
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391058,159,277 - 58,260,511 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001180232 (Get FASTA)   NCBI Sequence Viewer  
  NP_001333605 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346044 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346045 (Get FASTA)   NCBI Sequence Viewer  
  NP_080424 (Get FASTA)   NCBI Sequence Viewer  
  NP_957694 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513131 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513133 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513135 (Get FASTA)   NCBI Sequence Viewer  
  XP_006513137 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100684 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011397 (Get FASTA)   NCBI Sequence Viewer  
  XP_036011398 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH05621 (Get FASTA)   NCBI Sequence Viewer  
  AAY21820 (Get FASTA)   NCBI Sequence Viewer  
  ABV30673 (Get FASTA)   NCBI Sequence Viewer  
  ABV30674 (Get FASTA)   NCBI Sequence Viewer  
  BAB26259 (Get FASTA)   NCBI Sequence Viewer  
  BAB29637 (Get FASTA)   NCBI Sequence Viewer  
  BAC38699 (Get FASTA)   NCBI Sequence Viewer  
  BAC40663 (Get FASTA)   NCBI Sequence Viewer  
  BAE30227 (Get FASTA)   NCBI Sequence Viewer  
  BAE30814 (Get FASTA)   NCBI Sequence Viewer  
  BAE31411 (Get FASTA)   NCBI Sequence Viewer  
  BAE31922 (Get FASTA)   NCBI Sequence Viewer  
  EDL42130 (Get FASTA)   NCBI Sequence Viewer  
  EDL42131 (Get FASTA)   NCBI Sequence Viewer  
  EDL42132 (Get FASTA)   NCBI Sequence Viewer  
  Q99JW4 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_080424   ⟸   NM_026148
- Peptide Label: isoform 1
- UniProtKB: Q99JW4 (UniProtKB/Swiss-Prot),   A0A0R4J005 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_957694   ⟸   NM_201242
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: NP_001180232   ⟸   NM_001193303
- Peptide Label: isoform 3
- UniProtKB: Q9D7B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006513135   ⟸   XM_006513072
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006513133   ⟸   XM_006513070
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006513137   ⟸   XM_006513074
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006513131   ⟸   XM_006513068
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030100684   ⟸   XM_030244824
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001346044   ⟸   NM_001359115
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001346045   ⟸   NM_001359116
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001333605   ⟸   NM_001346676
- Peptide Label: isoform 4
- UniProtKB: E9QP62 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000101108   ⟸   ENSMUST00000105468
RefSeq Acc Id: ENSMUSP00000020078   ⟸   ENSMUST00000020078
RefSeq Acc Id: ENSMUSP00000020077   ⟸   ENSMUST00000020077
RefSeq Acc Id: ENSMUSP00000158997   ⟸   ENSMUST00000238939
RefSeq Acc Id: XP_036011398   ⟸   XM_036155505
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036011397   ⟸   XM_036155504
- Peptide Label: isoform X5
Protein Domains
LIM zinc-binding

Promoters
RGD ID:6819496
Promoter ID:MM_KWN:4188
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000061126
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,785,711 - 57,786,507 (+)MPROMDB
RGD ID:6846757
Promoter ID:MM_ACW:4721
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:LIMS1.ESEP07,   LORTER.ASEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,814,364 - 57,814,864 (+)MPROMDB
RGD ID:6846739
Promoter ID:MM_ACW:4724
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Lung,   Spleen
Transcripts:LIMS1.FSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,834,076 - 57,834,576 (+)MPROMDB
RGD ID:6819500
Promoter ID:MM_KWN:4191
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Lung,   Spleen
Transcripts:UC007FDA.1,   UC007FDB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,856,581 - 57,857,382 (+)MPROMDB
RGD ID:6818935
Promoter ID:MM_KWN:4192
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:UC007FDC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,861,659 - 57,862,159 (+)MPROMDB
RGD ID:6819498
Promoter ID:MM_KWN:4193
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   MEF_B6
Transcripts:OTTMUST00000061129
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,870,381 - 57,871,132 (+)MPROMDB
RGD ID:6819499
Promoter ID:MM_KWN:4194
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour,   Lung
Transcripts:OTTMUST00000061130
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361057,878,781 - 57,879,572 (+)MPROMDB
RGD ID:8672012
Promoter ID:EPDNEW_M14037
Type:initiation region
Name:Lims1_2
Description:Mus musculus LIM and senescent cell antigen-like domains 1 ,transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14038  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381058,323,570 - 58,323,630EPDNEW
RGD ID:8672014
Promoter ID:EPDNEW_M14038
Type:multiple initiation site
Name:Lims1_1
Description:Mus musculus LIM and senescent cell antigen-like domains 1 ,transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M14037  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381058,394,373 - 58,394,433EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1195263 AgrOrtholog
Ensembl Genes ENSMUSG00000019920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000020077 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000020078 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000101108 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000158997 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020077 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000020078 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000105468 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000238939 ENTREZGENE, UniProtKB/TrEMBL
InterPro PINCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:110829 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1195263 ENTREZGENE
NCBI Gene 110829 ENTREZGENE
PANTHER PTHR24210 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lims1 PhenoGen
PIRSF PINCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J005 ENTREZGENE, UniProtKB/TrEMBL
  A0A5F8MPJ3_MOUSE UniProtKB/TrEMBL
  A8CVP1_MOUSE UniProtKB/TrEMBL
  A8CVP4_MOUSE UniProtKB/TrEMBL
  E9QP62 ENTREZGENE, UniProtKB/TrEMBL
  LIMS1_MOUSE UniProtKB/Swiss-Prot
  Q4ZJB3_MOUSE UniProtKB/TrEMBL
  Q99JW4 ENTREZGENE
  Q9D7B2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3UAT7 UniProtKB/Swiss-Prot
  Q8BTR6 UniProtKB/Swiss-Prot
  Q9D5T4 UniProtKB/Swiss-Prot