Mterf2 (mitochondrial transcription termination factor 2)

Gene: Mterf2 (mitochondrial transcription termination factor 2) Ictidomys tridecemlineatus

Analyze

Symbol:

Mterf2

Name:

mitochondrial transcription termination factor 2

RGD ID:

12610645

Description:

ENCODES a protein that exhibits DNA binding (inferred); double-stranded DNA binding (inferred); nucleic acid binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); termination of mitochondrial transcription (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (inferred); mitochondrial nucleoid (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

MTERF domain containing 3; Mterfd3; transcription termination factor 2, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	14,987,812 - 15,006,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	8,005,944 - 8,007,095 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	7,998,229 - 8,007,103 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

termination of mitochondrial transcription (IEA)

Cellular Component

mitochondrial matrix (IEA)

mitochondrial nucleoid (IEA)

mitochondrion (IEA)

Molecular Function

DNA binding (IEA)

double-stranded DNA binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mterf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	14,987,812 - 15,006,137 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	8,005,944 - 8,007,095 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	7,998,229 - 8,007,103 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTERF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	106,977,277 - 106,987,146 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	106,973,120 - 106,987,163 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	107,371,055 - 107,380,924 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	105,895,199 - 105,905,059 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	107,036,630 - 107,046,488 (-)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	104,431,573 - 104,441,448 (-)	NCBI		HuRef
CHM1_1	12	107,336,699 - 107,346,574 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	106,940,911 - 106,950,780 (-)	NCBI		T2T-CHM13v2.0

Mterf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	84,951,092 - 84,963,982 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	84,955,297 - 84,963,891 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	85,119,433 - 85,128,027 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	85,119,433 - 85,128,027 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	84,582,178 - 84,590,772 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	84,549,235 - 84,557,800 (-)	NCBI		MGSCv36	mm8
Celera	10	87,095,781 - 87,104,375 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.63	NCBI

Mterf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	20,485,901 - 20,495,979 (+)	NCBI		GRCr8
mRatBN7.2	7	18,598,202 - 18,608,278 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	18,598,103 - 18,620,684 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	20,559,071 - 20,569,113 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	22,721,769 - 22,731,811 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	22,498,731 - 22,508,773 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	24,638,208 - 24,649,599 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	24,638,208 - 24,648,255 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	24,788,242 - 24,798,742 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	20,713,326 - 20,723,489 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	20,733,596 - 20,743,756 (+)	NCBI
Celera	7	15,826,281 - 15,836,295 (+)	NCBI		Celera
Cytogenetic Map	7	q13	NCBI

Mterf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	40,870,215 - 40,871,384 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955405	40,870,002 - 40,871,433 (-)	NCBI	ChiLan1.0	ChiLan1.0

MTERF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	115,033,512 - 115,043,169 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	115,028,022 - 115,039,568 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	104,544,783 - 104,554,675 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	107,938,754 - 107,948,648 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	107,939,021 - 107,940,178 (-)	Ensembl	panpan1.1		panPan2

MTERF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	31,792,889 - 31,794,304 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	31,792,917 - 31,794,074 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	31,765,709 - 31,780,579 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	32,621,587 - 32,636,444 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	32,627,245 - 32,635,702 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	32,357,826 - 32,372,680 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	32,648,303 - 32,663,103 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	32,834,267 - 32,849,133 (+)	NCBI		UU_Cfam_GSD_1.0

MTERF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	13,367,438 - 13,376,642 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	13,374,243 - 13,376,641 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	13,219,978 - 13,228,224 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTERF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	102,191,842 - 102,200,719 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	102,190,413 - 102,191,567 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	142,851,536 - 142,865,784 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mterf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	2,539,131 - 2,540,312 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624750	2,535,015 - 2,555,789 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010175 ⟹ ENSSTOP00000009128

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936492	8,005,944 - 8,007,095 (+)	Ensembl

RefSeq Acc Id:

XM_005322324 ⟹ XP_005322381

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	14,987,812 - 15,006,137 (+)	NCBI
SpeTri2.0	NW_004936492	7,998,229 - 8,007,103 (+)	NCBI

Sequence:

show sequence

ATTGGCCACGGGCAAAGGGGCGAGGTGGCTTGATTAGCGCTGCTTGCCTGGAGGTGCCTGGGAC
CCTGGACCCGGGATCCGGGCTGCGAGCCTCAGGAAGTCCGGAAAACCGCAGATCTTAGGTTGGC
TGGGGAGGGAGCAAGGACGGGGCCAGGGACGCGCAGAATCCCAGTACCTTGCTTGGAGTGGACG
CTGACAGTGCCATTGAAAAGTCGTGCATGCAAGTGACAAGAAAAGCTGGAGAGAAGCCCAAATG
GATTAACTGAAGCCCTAGGGAGAGACTAAAAGGTGCACTGGCTGCATTCTGAGTCCCAGGACTG
TGGGAAGTAGCCACTGGATTACAGGCATGTTGTGGAAGTTGCTGGTGAGATCGCAGCCTTGCAG
GCTGTGTTTTTTCAGAAAGATGCAATCAACTCCAAAATACAAACCCTTTCTAGCATACTTTACA
ACAGACAGGCAGTCAAACAAAGAAAATAAAAGAACAGTGGAAACGCTCTATAAATTTTCAGTTG
ACATTAGGAAAATTCGAAGTTTAAAAGGATGGGTACTTCTGGAGGATGAAACCTATGTTGAAGA
AGTTGCAAATATTTTACAAGAACTAGGTGCTGATGAGGCTGTAATAGCCAGTATTTTGGAACGC
TGCCCAGAAGCAATTGTCTGTAGTCCAGCTGCTATTGACACCCAGAGAAAACTCTGGCAGTTAG
TCTGCAAAAATGAGGAAGAGTTAGTCAAGTTAATAGAGCAGTTTCCAGAATCTTTCTTTATTGT
TAAGAACCAGGAGAACCTAAAGCTCAATGTTCAGTTCTTTCAAGAGCTGGGATTCAAGAATGTA
GTCATTAGTAGATTTCTGACAACTGCATCCAATATTTTTCATAATCCTGTTGAGAAGAATAAGG
AAATGATAAAGCTCCTTCAAGAGAGTTACCTAAATGTAGGTGGCTCTGAGGCCAACATGAAAGT
CTGGCTACTAAAATTATTAAGCCAAAATCCATTTATTTTGTTAAGGTCTCCTACAACTATAAAG
GAAACACTAGAATTTCTCCAGAAGCAAGGCTTTACAAACTTTGAAATTCTTCAACTTCTGTCCA
AACTCAAAGGATTTCTTTTTCAACTTTGTCCAAGAGGTATCCAGAACAGTATTTCCTTCTCTAA
AAATGCTTTTGAATGCACAGATCATGACCTGAAGCAATTAGTTTTGAAATGTCCTGCTCTTTTA
TATTATTCTGTTCCAGTTTTAGAAGAGAGAATTCAGGGATTATTAAAAGAAGGAATTTCCATAG
CTCAAATAAGAGAGACACCAATGGTTCTCGAATTAACGCCACAGATAGTTCAGTACAGAATAAG
GAAACTAAATTCTTTAGGCTACAGAATAAAGGACGGACACCTAGCAAATCTAAATGGAACAAAA
AAAGAGTTTGAAGCTAACTTTGGCAAAATTCAAGCCAAAAAAGAGAGGCCATTATTTAACCCTG
TGGCACCATTAAATGTTGAAGAATGACTTACTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005322381	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009128.3
GenBank Protein	KAG3291088	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005322381 ⟸ XM_005322324

- UniProtKB:

I3MEZ4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLWKLLVRSQPCRLCFFRKMQSTPKYKPFLAYFTTDRQSNKENKRTVETLYKFSVDIRKIRSLK
GWVLLEDETYVEEVANILQELGADEAVIASILERCPEAIVCSPAAIDTQRKLWQLVCKNEEELV
KLIEQFPESFFIVKNQENLKLNVQFFQELGFKNVVISRFLTTASNIFHNPVEKNKEMIKLLQES
YLNVGGSEANMKVWLLKLLSQNPFILLRSPTTIKETLEFLQKQGFTNFEILQLLSKLKGFLFQL
CPRGIQNSISFSKNAFECTDHDLKQLVLKCPALLYYSVPVLEERIQGLLKEGISIAQIRETPMV
LELTPQIVQYRIRKLNSLGYRIKDGHLANLNGTKKEFEANFGKIQAKKERPLFNPVAPLNVEE

hide sequence

RefSeq Acc Id:

ENSSTOP00000009128 ⟸ ENSSTOT00000010175

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010181	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010175.3	UniProtKB/TrEMBL
Gene3D-CATH	1.25.70.10	UniProtKB/TrEMBL
InterPro	MTERF	UniProtKB/TrEMBL
	MTERF_sf	UniProtKB/TrEMBL
NCBI Gene	Mterf2	ENTREZGENE
PANTHER	PTHR15437	UniProtKB/TrEMBL
	TRANSCRIPTION TERMINATION FACTOR 2, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	mTERF	UniProtKB/TrEMBL
SMART	Mterf	UniProtKB/TrEMBL
UniProt	I3MEZ4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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