Trpv6 (transient receptor potential cation channel subfamily V member 6) - Rat Genome Database

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Gene: Trpv6 (transient receptor potential cation channel subfamily V member 6) Ictidomys tridecemlineatus
Analyze
Symbol: Trpv6
Name: transient receptor potential cation channel subfamily V member 6
RGD ID: 12572494
Description: ENCODES a protein that exhibits calcium channel activity (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); calcium ion import (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); gestational diabetes (ortholog); Hereditary Pancreatitis (ortholog); FOUND IN calcium channel complex (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transient receptor potential cation channel subfamily V member 6, transcript variant X1; transient receptor potential cation channel subfamily V member 6, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,543,552 - 12,558,192 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527345,626 - 359,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527345,237 - 359,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Trpv6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511812,543,552 - 12,558,192 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936527345,626 - 359,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936527345,237 - 359,877 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRPV6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387142,871,208 - 142,885,745 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7142,871,208 - 142,885,745 (-)EnsemblGRCh38hg38GRCh38
GRCh377142,568,961 - 142,583,490 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367142,279,082 - 142,293,599 (-)NCBINCBI36Build 36hg18NCBI36
Build 347142,085,796 - 142,100,314NCBI
Celera7137,406,262 - 137,420,596 (-)NCBICelera
Cytogenetic Map7q34NCBI
HuRef7136,907,167 - 136,921,549 (-)NCBIHuRef
CHM1_17142,505,175 - 142,519,717 (-)NCBICHM1_1
T2T-CHM13v2.07144,227,023 - 144,241,552 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27141,970,820 - 141,985,355 (-)NCBI
Trpv6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39641,597,553 - 41,613,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl641,597,558 - 41,613,339 (-)EnsemblGRCm39 Ensembl
GRCm38641,620,619 - 41,636,405 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl641,620,624 - 41,636,405 (-)EnsemblGRCm38mm10GRCm38
MGSCv37641,570,618 - 41,586,404 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36641,550,232 - 41,565,942 (-)NCBIMGSCv36mm8
Celera641,573,210 - 41,588,993 (-)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map619.79NCBI
Trpv6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8471,474,006 - 71,489,667 (-)NCBIGRCr8
mRatBN7.2470,507,347 - 70,523,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl470,507,348 - 70,523,017 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx475,424,871 - 75,440,482 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0471,338,124 - 71,353,735 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0469,746,459 - 69,762,055 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0470,918,631 - 70,934,291 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl470,918,632 - 70,934,295 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04135,705,692 - 135,721,356 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4469,331,973 - 69,347,633 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1469,608,103 - 69,623,760 (-)NCBI
Celera465,472,398 - 65,488,058 (-)NCBICelera
Cytogenetic Map4q23NCBI
Trpv6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955494818,643 - 836,126 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955494820,801 - 835,931 (-)NCBIChiLan1.0ChiLan1.0
LOC100990398
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26179,719,619 - 179,734,609 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1731,729,875 - 31,744,866 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07134,862,223 - 134,877,051 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17147,353,684 - 147,368,475 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7147,353,684 - 147,368,475 (-)Ensemblpanpan1.1panPan2
TRPV6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1166,691,521 - 6,706,205 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl166,691,254 - 6,706,207 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0166,602,597 - 6,617,275 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl166,602,330 - 6,617,284 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1166,555,020 - 6,570,553 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0166,407,357 - 6,422,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0166,466,102 - 6,480,792 (+)NCBIUU_Cfam_GSD_1.0
TRPV5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl187,332,222 - 7,348,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1187,332,253 - 7,348,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,626,724 - 7,652,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRPV6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121111,750,821 - 111,766,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21111,750,945 - 111,765,450 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660728,474,129 - 8,489,168 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trpv6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480012,074,999 - 12,090,049 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480012,074,997 - 12,090,141 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008005   ⟹   ENSSTOP00000007165
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936527345,626 - 359,942 (-)Ensembl
RefSeq Acc Id: XM_005326603   ⟹   XP_005326660
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511812,543,552 - 12,558,192 (+)NCBI
SpeTri2.0NW_004936527345,237 - 359,877 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040291334   ⟹   XP_040147268
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511812,551,663 - 12,558,192 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005326660 (Get FASTA)   NCBI Sequence Viewer  
  XP_040147268 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007165.3
GenBank Protein KAG3277327 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277328 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005326660   ⟸   XM_005326603
- Peptide Label: isoform X1
- UniProtKB: I3MAU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040147268   ⟸   XM_040291334
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000007165   ⟸   ENSSTOT00000008005
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000007992 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008005.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRPV UniProtKB/TrEMBL
  TRPV5/TRPV6 UniProtKB/TrEMBL
  TRPV6_channel UniProtKB/TrEMBL
NCBI Gene Trpv6 ENTREZGENE
PANTHER PTHR10582 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 6 UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
  ECACCHANNEL UniProtKB/TrEMBL
  ECACCHANNEL1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt I3MAU4 ENTREZGENE, UniProtKB/TrEMBL