TRPV5 (transient receptor potential cation channel subfamily V member 5) - Rat Genome Database

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Gene: TRPV5 (transient receptor potential cation channel subfamily V member 5) Sus scrofa
Analyze
No known orthologs.
Symbol: TRPV5 (Ensembl: TRPV6)
Name: transient receptor potential cation channel subfamily V member 5
RGD ID: 13990585
Description: ENCODES a protein that exhibits calcium channel activity (inferred); calmodulin binding (inferred); identical protein binding (inferred); INVOLVED IN calcium ion homeostasis (inferred); calcium ion import across plasma membrane (inferred); calcium ion transmembrane transport (inferred); FOUND IN calcium channel complex (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: putative TRPV6; transient receptor potential cation channel subfamily V member 6; TRPV6
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl187,332,222 - 7,348,381 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1187,332,253 - 7,348,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2187,626,724 - 7,652,621 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:19641180   PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in TRPV5
627 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSSCT00000017933   ⟹   ENSSSCP00000017452
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl187,332,491 - 7,348,381 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000017934   ⟹   ENSSSCP00000017453
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl187,043,646 - 7,348,033 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000057027   ⟹   ENSSSCP00000035081
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl187,332,222 - 7,348,379 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000062836   ⟹   ENSSSCP00000048460
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl187,288,145 - 7,331,224 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000076572   ⟹   ENSSSCP00000063408
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl187,043,646 - 7,318,392 (+)Ensembl
RefSeq Acc Id: XM_021078898   ⟹   XP_020934557
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1187,332,253 - 7,348,383 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020934557 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACF16396 (Get FASTA)   NCBI Sequence Viewer  
  ACJ03973 (Get FASTA)   NCBI Sequence Viewer  
  BAH87024 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000017452.4
  ENSSSCP00000035081
  ENSSSCP00000035081.2
RefSeq Acc Id: XP_020934557   ⟸   XM_021078898
- UniProtKB: C6L2A6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000017453   ⟸   ENSSSCT00000017934
Ensembl Acc Id: ENSSSCP00000017452   ⟸   ENSSSCT00000017933
Ensembl Acc Id: ENSSSCP00000063408   ⟸   ENSSSCT00000076572
Ensembl Acc Id: ENSSSCP00000048460   ⟸   ENSSSCT00000062836
Ensembl Acc Id: ENSSSCP00000035081   ⟸   ENSSSCT00000057027
Protein Domains
Ion transport


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016469 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017933.4 UniProtKB/TrEMBL
  ENSSSCT00000057027 ENTREZGENE
  ENSSSCT00000057027.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRPV UniProtKB/TrEMBL
  TRPV5/TRPV6 UniProtKB/TrEMBL
  TRPV6_channel UniProtKB/TrEMBL
NCBI Gene TRPV6 ENTREZGENE
PANTHER PTHR10582 UniProtKB/TrEMBL
  TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 6 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
  Ion_trans UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
  ECACCHANNEL UniProtKB/TrEMBL
  ECACCHANNEL1 UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
UniProt A0A286ZUB6_PIG UniProtKB/TrEMBL
  C6L2A6 ENTREZGENE, UniProtKB/TrEMBL
  F1SRU0_PIG UniProtKB/TrEMBL
UniProt Secondary F1SRU1 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-08-02 TRPV5  transient receptor potential cation channel subfamily V member 5  TRPV6  transient receptor potential cation channel subfamily V member 6  Symbol and/or name change 19259463 PROVISIONAL